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Homology
BLAST of mRNA_C-linearis_contig10.507.1 vs. uniprot
Match: A0A6H5KJ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ39_9PHAE) HSP 1 Score: 364 bits (935), Expect = 1.440e-121 Identity = 179/263 (68.06%), Postives = 212/263 (80.61%), Query Frame = 1
Query: 10 AKRRSSATIRTVLAVCG-LHLLASIPTANA-TTAGYGARRTLYYEDSDCRLETFREFSYEAISIEMDGAASQVGFGECYARGSTGATTTCNPTNGTSTVETYLDTSCSALLYTSAEDAECTSLRVDGETCPPGGPGSATTDCVATEPFDSMQPGPFNLIGSPYKDMHCLERTGGDHVVSGHAFGVGSGECSESPLVRGPRYALTECQAD-HTVYAQVFGPDDATCADDMRLEMVMFPRAASDDRSGGMCALGHFEDGSEVYYR 789
AKR++SA I T +AVC L LL IPTA A T+ GARRTLYY+D+ CRLETFREF+YE +SI+ DG+ SQVGFGECYARGSTGA TTC+PT+GTSTVETYLDT+C LY+S + EC LRVDGETCPPGGPGS +DC++ +P D++ PG FNLIGSPY D C ERTGGDH+VSG+AFG+G+GECS SPLVRGPRYALTEC + + V AQVF P+D+TC+ D RLEM+MF RA +D +GGMCALGHFEDG E YYR
Sbjct: 7 AKRKASAIISTTVAVCCYLQLLCKIPTAMAGATSQTGARRTLYYQDTGCRLETFREFAYEVMSIDSDGSESQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSPECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLVRGPRYALTECDTETNLVLAQVFSPEDSTCSGDTRLEMIMFARAVDNDTNGGMCALGHFEDGHEEYYR 269
BLAST of mRNA_C-linearis_contig10.507.1 vs. uniprot
Match: D7FZX6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX6_ECTSI) HSP 1 Score: 271 bits (694), Expect = 2.550e-88 Identity = 135/198 (68.18%), Postives = 157/198 (79.29%), Query Frame = 1
Query: 10 AKRRSSATIRTVLAVCG-LHLLASIPTANA-TTAGYGARRTLYYEDSDCRLETFREFSYEAISIEMDGAASQVGFGECYARGSTGATTTCNPTNGTSTVETYLDTSCSALLYTSAEDAECTSLRVDGETCPPGGPGSATTDCVATEPFDSMQPGPFNLIGSPYKDMHCLERTGGDHVVSGHAFGVGSGECSESPLVRG 597
AKRR+S I T +A C L LL IPTA A TA GARRTLYY+D+ CRLETFREF+YE +SIE DG+ SQVGFGECYARGSTGA TTC+PT+GTSTVETYLDT+C LY+S + EC LRVDGETCPPGGPGS +DC++ +P D++ PG FNLIGSPY D C ERTGGDH+VSG+AFG+G+GECS SPL G
Sbjct: 7 AKRRASVIISTTVAACWCLQLLCKIPTATAGATAQTGARRTLYYQDTGCRLETFREFAYEVMSIESDGSDSQVGFGECYARGSTGAITTCDPTDGTSTVETYLDTACQIHLYSSKDSLECVDLRVDGETCPPGGPGSMASDCISEDPIDTITPGTFNLIGSPYSDPFCEERTGGDHIVSGNAFGIGNGECSLSPLGEG 204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-22_003710.1 |
| Exons | 6 |
| Model size | 861 |
| Cds size | 861 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622927335.8774362-CDS-C-linearis_contig10:1571775..1571995 | 1622927335.8774362-CDS-C-linearis_contig10:1571775..1571995 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1571776..1571995 + |
| 1690879633.8148966-CDS-C-linearis_contig10:1571775..1571995 | 1690879633.8148966-CDS-C-linearis_contig10:1571775..1571995 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1571776..1571995 + |
| 1622927335.887522-CDS-C-linearis_contig10:1573588..1573695 | 1622927335.887522-CDS-C-linearis_contig10:1573588..1573695 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1573589..1573695 + |
| 1690879633.8275416-CDS-C-linearis_contig10:1573588..1573695 | 1690879633.8275416-CDS-C-linearis_contig10:1573588..1573695 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1573589..1573695 + |
| 1622927335.896413-CDS-C-linearis_contig10:1574117..1574229 | 1622927335.896413-CDS-C-linearis_contig10:1574117..1574229 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1574118..1574229 + |
| 1690879633.8378882-CDS-C-linearis_contig10:1574117..1574229 | 1690879633.8378882-CDS-C-linearis_contig10:1574117..1574229 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1574118..1574229 + |
| 1622927335.904778-CDS-C-linearis_contig10:1574934..1575143 | 1622927335.904778-CDS-C-linearis_contig10:1574934..1575143 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1574935..1575143 + |
| 1690879633.8473685-CDS-C-linearis_contig10:1574934..1575143 | 1690879633.8473685-CDS-C-linearis_contig10:1574934..1575143 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1574935..1575143 + |
| 1622927335.9134789-CDS-C-linearis_contig10:1575888..1576028 | 1622927335.9134789-CDS-C-linearis_contig10:1575888..1576028 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1575889..1576028 + |
| 1690879633.8571959-CDS-C-linearis_contig10:1575888..1576028 | 1690879633.8571959-CDS-C-linearis_contig10:1575888..1576028 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1575889..1576028 + |
| 1622927335.924435-CDS-C-linearis_contig10:1576751..1576824 | 1622927335.924435-CDS-C-linearis_contig10:1576751..1576824 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1576752..1576824 + |
| 1690879633.8655546-CDS-C-linearis_contig10:1576751..1576824 | 1690879633.8655546-CDS-C-linearis_contig10:1576751..1576824 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig10 1576752..1576824 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.507.1 >prot_C-linearis_contig10.507.1 ID=prot_C-linearis_contig10.507.1|Name=mRNA_C-linearis_contig10.507.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=287bp
MQEAKRRSSATIRTVLAVCGLHLLASIPTANATTAGYGARRTLYYEDSDC RLETFREFSYEAISIEMDGAASQVGFGECYARGSTGATTTCNPTNGTSTV ETYLDTSCSALLYTSAEDAECTSLRVDGETCPPGGPGSATTDCVATEPFD SMQPGPFNLIGSPYKDMHCLERTGGDHVVSGHAFGVGSGECSESPLVRGP RYALTECQADHTVYAQVFGPDDATCADDMRLEMVMFPRAASDDRSGGMCA LGHFEDGSEVYYRRAQPRRRRRPRRSAKRRHRRRQST back to topmRNA from alignment at C-linearis_contig10:1571776..1576824+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig10.507.1 ID=mRNA_C-linearis_contig10.507.1|Name=mRNA_C-linearis_contig10.507.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5049bp|location=Sequence derived from alignment at C-linearis_contig10:1571776..1576824+ (Chordaria linearis ClinC8C monoicous) ATGCAAGAGGCGAAGAGAAGAAGCTCTGCGACGATTCGTACGGTACTGGC
GGTGTGCGGCCTGCATCTCCTCGCGAGCATCCCAACGGCGAACGCAACAA
CTGCCGGCTACGGAGCCAGGAGAACGCTCTACTACGAGGACTCTGACTGC
CGATTAGAGACCTTCCGAGAGTTTTCCTACGAGGCCATATCGATAGAGAT
GGATGGCGCGGCAAGTCAAGGTGCGACGGGTGTGTGTGTGTGTTGCTGCA
GGCCGGCTTGCTCTGCACCGGTACTTTCCGTCCTCCACACACGATTTTTT
TTTCCTCTTTCGAGATTTTGGCCGTTGATGACTTTCCTGTCATCTCTCCT
AAACCCCCTCGGAAAACCAAGATTGATTTGCGCGCCTTTGCGTGTCGATA
CCAACGAATAACCGGTGCTGCGGTGCAGAGCTTTTACCCTGCCCCACATT
GCCACGATGACTTTGTTGTTGTAGGCACGTCGTCTAGTTCCTGCACGAGC
TCTCAACGCCCCCCCCCCCAGATTCCTCCACAAGAAAAACCTGTCGAGGG
CCGCGGTTTTTGACGCAAAAACATGCCCCGGCGGCCGGTGGCCATGTTGC
GAACTGCCTGCACCAAACGGTGTATGCTCGATTTGGTTGTGGCCGCTAGA
GCTGTGTCTGCCCCTGGGAAAAGGCGGACAGGTCGGGCCCCAGGGCGCAA
GGCAGAAATTACCCACAAGTATTGTAGATTTGAAACATGTTCCGGCTCTT
GGCGATTCGTCTACCCCGCTGCTGGGAAACTGGGCAAACTGATGCCGCAG
CAGCGAAGCGCATATTTATCCTACTTTGTTTGCGTGTGGTGGTAGGGTAG
CCTATCGGGTGCAACTGCAGCACATCTTTTCCTTCGAAACTACGCTGTGC
ACAGCAGGGGATAACGCTGAGGACATACGAAAAAATAGAGACAACGGACA
AACGGGCCATACCGGAGGCAGGGAAAGAACGAAAAAACAAACACAAAGCA
GCAGTAGATCTAGTAGTAGCACACCTGGTTCGCGCTCTTCAAACCATCTG
AATCGATATTTTGTCGGAGACTCCCCGTGCTGCCCTCGACACACCACCTT
GCGAACACGCTGTTACGGACGATGTTGTGTGATAAATATGTACTTCGAGT
ATGCAGCAATCTTTCCGCGAATGAATGCAGACAGCAGTTAGTTGTGGTGG
TAAACAGGAGGATTCAAGGTTCTACCATAGTTCTACCATAGCTGTAGGTA
CGGGAGGGGTTAAGGGAGGGGTGCACGCTCTCTTGGCCATGCATGCCCTG
ATATACAGAGAATATCGTCAAAACGTATGTGGCGGGGTGTTATTTTCTTT
CGTCGTGAGGGCTGGGGTGTGATCGATGTCCGCCGAAGTGGGATTCACAC
CCGTCGTCATGTTGGTACAACGCCCCGACGGGTGTGGCTGTGGACACTAC
ATGAGCAATATATCTTGGTATCGTCACCTGGTTTTCTAGGTTTTCCATCA
TACTTACCCCTAACTTTAGTCATTGATAGGCATACATACGCCCGACACCT
CAGCCTGCTCTTTCCCGGCCGACAACAGCCTATGGAACAAGCGCCCTGCT
GGTATCATACGTTCGTACTTTCGGGGCGAGAACCTATCATATGCAACTCA
GATGACACGCGCGCACCGTTTGTGGACAAGCCACGCTGAATAGAATATCG
ATAGACCGCCTTCGCTTCCCCGTACTGATGTACCAGGTATTCTCTATCGC
TCTCTGCGTCTCCCTCCCTCCCTCCCTCCGTCTGCTTTTCTTTTGTCTTG
TTCTTTTGTTCAGTGGGCTTTGGTGAGTGTTACGCAAGAGGGAGCACGGG
GGCAACCACAACTTGCAACCCGACGAACGGGACGAGCACGGTGGAGACCT
ACCTCGACACTTCGTGCAGCGTAAGTGCTACAGATAGTATGTATCATATC
TCCCTCCCTTTTGAGTGCCTGCCCCCCCCTAGGGGGGGCATTTTTTGTCT
TGTTTTTTCGTGTACATGTGTACACAGGTTCAAAAACGTCGGCAGTCTAC
GCCAAATTTGTGACCGAAAGTCTTCCCAGGGGTGACTGCTGCCTGTTGCC
ACATATGACCCTACCTCACCACGGACATTATCCCACTTGGAACTCAAGTA
TCGTGTTTTTTGTTTTTGTCGGCTGCGAGAGACACAGCAGCGGCGATCGG
TGCGCCTGCCTTCACCTCAGCCTCGTCCGGCTTCTGGTCATCGGCATGGT
GGACAGAGAACGCCAGCTACCGGCTACCTCTAAAACTAGGAAACGTAGAA
ACCTGAAATTAAATCCTCGCCACGCTCGCCATGACGTCGCAGGCCCTCCT
CTACACCTCTGCTGAGGACGCCGAGTGCACCAGCCTGAGGGTGGACGGAG
AAACTTGCCCGCCTGGCGGACCGGGGTCTGCTACCACGGACTGCGTGGCC
ACAGGTGTGTTTGAGCGTGGTTGAAAAAACGGGGGACGGGGAAGTAGGGA
GAGATGAAGTAAATAAATAGTACTAGAGAACAATGGCTCGGCTGAGAGTC
CGCTTAGTCAGAGTGTTGAGCAGCTATCGTAATCTTATCAACCCCAAATT
CTGGTTTTAAGACATTAGGGCGTGCAGCCAGATGTCGAATTAAAAAAGGT
TCTCTCCTTGGACACTGCTGTCGAATTGGAAATAATTAACTCTTTAAAGG
AGAGGGGGGGCAGAGAGAGTTGTGAGGGTTTTACCTGGGTGTTAGTGTTG
CGTTCAGAAACCGTCGTCGTGTTCCACATTCTTGCTTCCGATGTGTCGGG
CGTTCGAGTGATCTTGCTTTAGGTCCATCTCTCCCCGAAGAGTAGCCAAC
TCCGAAGGACCACGGGAGGATATTTACTTGGTATTTAGTCATCCTGTTTC
GTTTTCTGTCTTCATCGCCCCCGAGAAACTCCTTCATCCTCTGGTGAGGA
GCGAGGTTTGGTGAGATATCCCTGGTATACAGTCTATATACTTGGAATTG
AAAATCAACACCCAAAGATCGACGTTGTAGTCGATACCATCTCCCTCCAC
TCTTCGATATCGATAACCCACAACCCCATGACCCCCCCCGCGCCCCCTCT
CCTATTCCACCCGCGTGTCCCCCCCCCCCTTTTCCCTTGGTCGCCTTTTT
TTTTTGCAGAGCCTTTCGACAGCATGCAACCGGGGCCCTTCAACCTCATC
GGGTCGCCGTACAAGGACATGCACTGCCTGGAGAGGACAGGCGGCGACCA
CGTCGTGTCCGGCCACGCGTTCGGCGTCGGCAGCGGGGAATGCTCCGAGT
CTCCCCTTGTCAGAGGGCCGCGCTACGCGCTCACCGAGTGCCAGGCGGAC
CACACGGTGTACGCTCAGGTATGGGGTGGTTAGTGATTCGTTATTCCCAC
GGTTTCTGTAGTTATTCCCTCGGTTTCTTCCGTTATTCTCACGATTTATT
TCGTTATTCCCACGGTTTCTTCCGCTATTGTCACAGTTTATTTTGTTATT
CCCACGGTTTCTGTCGTTATTCCCTCGGTTTCTTCCGTTATTCCCACGGT
TTCTGTCGTTACTCCCTCGGTTTTTTTCGTTATTCTCACGATTTAGTTCG
TTATTCCCACGGTTTCTTCCGCTATTGTCACAGTTTAGTTCGTTTTTCCC
ACATTTTTGGTGCTTGAGGTGCTTGGCGATCGGTCGGTGAAGTCGTGAAT
TGGGCTTTCTGCGTGGCTAGGGCGAGGAGCCAGTCAGGTTTTCGGTTTGC
TGCTGGTTTGAACTGAAGGCGGTGATTTCGCCGCTGTTGCTTCTGCCGCC
GCTGTCGGTGGTGGTGGCGATGGTGTTTCCTTTGCACATATGACATATGT
ATGTGGTACTCCTCCCGGCCACGACATCCATGTCTAACCGCACCAGCCTT
CGCTGCACGATGTGTATCTCGTCCCTCCCTTGTCCCGGGTCCATCCCCGC
CTCTCTCAACACCACCACCACCACACAACCATCCCTGCACGATATACCTT
AGACCCTCCCATTGTCCCGAGCTTTTGGGCCCCCTCTCTCAACATCGCCA
CAACGGCCGCTGAATGATGTAGTACACGTATATTTGCCTCGGGCCGTTTC
TTATTTGTCCCAGGTGTTCGGTCCCGACGACGCCACCTGCGCGGACGACA
TGCGGCTGGAGATGGTGATGTTCCCAAGGGCAGCGAGCGACGACAGGAGC
GGTGGCATGTGCGCGCTGGGTCACTTCGAGGATGGCAGTGAGGTGTACTA
CCGGTAAGGGCGGCGTGTGCGTTCGTTGCTGTTGCTTGCTCGTCTAGAAA
ATACGAAAATATGCCCTGTGCCTCCCTCGTTTCCTTCTCTTTTTTCCCTT
TTTTTTCCTTTTTTCCCCCCTCTTTTTCCTTGTTTCATTTCCTTTTCTGT
TCCTTCTTGTGCAGAACTCCTGTAGGTCCCGGCCAATCAAAGGTATCTAC
ATGGAAGTTGCCTCTTTTTTTTCAAAGTTTGTTTTTGTGCGAGCTTTTCC
TGTATGTGGGGGGTTCGTTTAGCTGGGAAAAGATTCCGCGCCGTGCTGGT
GTCTTTGGAAGGCGCTCACCTGTGTACAAGTATGGCGAATGGTGCCTGTG
AGAGGCACCCTGCTCGAGGGGGCTGCGTGTGGGTTTGTTGCCGCTTCAGC
TCCACACGTACTTTCCCCGCCGCAGCGCTTGAGCGATAGTCCCACGGTTC
ATGTTTCGCGGTTTCTGGCGCAACGGAACCCCGGTATCCTCAGGCCTTAC
TTGTTTTCCGAGTGGCCGCTCTACGGCCGCACGCATGCATATATTCCGAG
AGAAGCTCTTGTCTCGTATTGCCGTCACAGCAGTAGGCGGGTGGAGGACC
CCAGAGCGCCCGGCCGTCAGCTCTGGGGGACTGAAAATCTCCGCCCTTTC
ACCGACGATTTGTTTTTGGTGCCCTCCTGCTGCTTTTCCTGCTTTCCCCC
CGTTCTCACCGGGCGTCAGTCTCAAGGCGTGCACAACCGAGGAGGAGACG
CCGGCCACGGCGATCGGCGAAACGCCGGCACCGACGCCGGCAGTCGACG back to topCoding sequence (CDS) from alignment at C-linearis_contig10:1571776..1576824+ >mRNA_C-linearis_contig10.507.1 ID=mRNA_C-linearis_contig10.507.1|Name=mRNA_C-linearis_contig10.507.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at C-linearis_contig10:1571776..1576824+ (Chordaria linearis ClinC8C monoicous) ATGCAAGAGGCGAAGAGAAGAAGCTCTGCGACGATTCGTACGGTACTGGC GGTGTGCGGCCTGCATCTCCTCGCGAGCATCCCAACGGCGAACGCAACAA CTGCCGGCTACGGAGCCAGGAGAACGCTCTACTACGAGGACTCTGACTGC CGATTAGAGACCTTCCGAGAGTTTTCCTACGAGGCCATATCGATAGAGAT GGATGGCGCGGCAAGTCAAGATGCAAGAGGCGAAGAGAAGAAGCTCTGCG ACGATTCGTACGGTACTGGCGGTGTGCGGCCTGCATCTCCTCGCGAGCAT CCCAACGGCGAACGCAACAACTGCCGGCTACGGAGCCAGGAGAACGCTCT ACTACGAGGACTCTGACTGCCGATTAGAGACCTTCCGAGAGTTTTCCTAC GAGGCCATATCGATAGAGATGGATGGCGCGGCAAGTCAAGTGGGCTTTGG TGAGTGTTACGCAAGAGGGAGCACGGGGGCAACCACAACTTGCAACCCGA CGAACGGGACGAGCACGGTGGAGACCTACCTCGACACTTCGTGCAGCTGG GCTTTGGTGAGTGTTACGCAAGAGGGAGCACGGGGGCAACCACAACTTGC AACCCGACGAACGGGACGAGCACGGTGGAGACCTACCTCGACACTTCGTG CAGCGCCCTCCTCTACACCTCTGCTGAGGACGCCGAGTGCACCAGCCTGA GGGTGGACGGAGAAACTTGCCCGCCTGGCGGACCGGGGTCTGCTACCACG GACTGCGTGGCCACAGGCCCTCCTCTACACCTCTGCTGAGGACGCCGAGT GCACCAGCCTGAGGGTGGACGGAGAAACTTGCCCGCCTGGCGGACCGGGG TCTGCTACCACGGACTGCGTGGCCACAGAGCCTTTCGACAGCATGCAACC GGGGCCCTTCAACCTCATCGGGTCGCCGTACAAGGACATGCACTGCCTGG AGAGGACAGGCGGCGACCACGTCGTGTCCGGCCACGCGTTCGGCGTCGGC AGCGGGGAATGCTCCGAGTCTCCCCTTGTCAGAGGGCCGCGCTACGCGCT CACCGAGTGCCAGGCGGACCACACGGTGTACGCTCAGAGCCTTTCGACAG CATGCAACCGGGGCCCTTCAACCTCATCGGGTCGCCGTACAAGGACATGC ACTGCCTGGAGAGGACAGGCGGCGACCACGTCGTGTCCGGCCACGCGTTC GGCGTCGGCAGCGGGGAATGCTCCGAGTCTCCCCTTGTCAGAGGGCCGCG CTACGCGCTCACCGAGTGCCAGGCGGACCACACGGTGTACGCTCAGGTGT TCGGTCCCGACGACGCCACCTGCGCGGACGACATGCGGCTGGAGATGGTG ATGTTCCCAAGGGCAGCGAGCGACGACAGGAGCGGTGGCATGTGCGCGCT GGGTCACTTCGAGGATGGCAGTGAGGTGTACTACCGGTGTTCGGTCCCGA CGACGCCACCTGCGCGGACGACATGCGGCTGGAGATGGTGATGTTCCCAA GGGCAGCGAGCGACGACAGGAGCGGTGGCATGTGCGCGCTGGGTCACTTC GAGGATGGCAGTGAGGTGTACTACCGGCGTGCACAACCGAGGAGGAGACG CCGGCCACGGCGATCGGCGAAACGCCGGCACCGACGCCGGCAGTCGACGG CGTGCACAACCGAGGAGGAGACGCCGGCCACGGCGATCGGCGAAACGCCG GCACCGACGCCGGCAGTCGACG back to top
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