mRNA_C-linearis_contig10.492.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.492.1
Unique NamemRNA_C-linearis_contig10.492.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 446 bits (1147), Expect = 1.850e-151
Identity = 234/391 (59.85%), Postives = 255/391 (65.22%), Query Frame = 3
Query:    3 IEWEDSDE-DEPPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELK--------------------------------------------------------------------------------------------------------------VLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKRE 842
             EWEDS E D PPVKR R+VK+R+DWSTSAWW+QLQ+ DLLDHTT+AAKVFRTRFRVPH FFLELVK+A+GKKWFS   KDAVGR GIP ELK                                                                                                              +LTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY   TYKLR+ADGTFRERKGCY IVDNGYHEVN++G P+R RE
Sbjct:   48 FEWEDSGEQDGPPVKRSRQVKERRDWSTSAWWLQLQNADLLDHTTEAAKVFRTRFRVPHAFFLELVKMARGKKWFSVREKDAVGRRGIPIELKLSSYRSGLLLLVVNCSDVPSIEPMRWIVVHNFTRWYRRVHSSTAVVAEHGSMGNVPCTVTRTSHRWHRKYCCRRPTAREKRRTLWFRLHTFQTRGHLRGHATTFDAASTKILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMRE 438          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 1.560e-127
Identity = 188/283 (66.43%), Postives = 220/283 (77.74%), Query Frame = 3
Query:   12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKREAI 848
            EDS+++E    P VKR RRV QR+DW TSAWW +LQD DL DHTT AAKVFR RFRVP+PFF ELVKL++ K+WFS G KDA  R GIP ELKVL      G+GNCFDD+ QLS MS+S+A A FHK C+H A EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIG  MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY +  YKLRK +GT R R+GC+LIVDNGY+E N     SR  E++
Sbjct:   46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHLESV 322          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 3.790e-105
Identity = 161/235 (68.51%), Postives = 176/235 (74.89%), Query Frame = 3
Query:  276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG----------------------------------------------CYLIVDNGYHEVNAVGRPSRKRE 842
            +VLTALQILGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY   TYKLR+ADGT+RERKG                                              CYLIVDNGYHEVN++G P+R RE
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCYLIVDNGYHEVNSLGHPNRMRE 237          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 317 bits (813), Expect = 1.210e-100
Identity = 156/280 (55.71%), Postives = 199/280 (71.07%), Query Frame = 3
Query:   12 EDSDEDEPPVKRPRRVKQRKDWSTSAWWIQLQD------GDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833
            E+ +ED   +KR RRV  RKD++ S W IQLQ+        ++D T+  A+ FR  FR+P+PFF+ELV L K + WF  G +DA GR GIP +LKVL  LQIL RGNCF DI  +S +S   AAATFH+  ++FA+EM+ EHI+LPTG YQ  VM  YD+LG +GA GSTDVTHI WGMCP+   RSYTGKEG+PT+AYQVTVDH  RV+A+T GFTGSTNDK+IIRYD  V  I+ +  Y +  + + +ADGT  + KGCYL+VDNGYH+   +  PS+
Sbjct:   65 EEEEEDNREIKR-RRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSK 343          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 299 bits (766), Expect = 1.040e-97
Identity = 146/189 (77.25%), Postives = 157/189 (83.07%), Query Frame = 3
Query:  276 KVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKRE 842
            +VLT LQ LGRGNCFDDI QLSLMSK MAAATFHK CKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G                V+ IKT+ QY   TYKLR ADGTFRERKGCYLIVDNGYHEVN++G P+R RE
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHEVNSLGHPNRMRE 175          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 5.230e-97
Identity = 149/276 (53.99%), Postives = 190/276 (68.84%), Query Frame = 3
Query:   15 DSDEDEPPVKRPRRVKQRKDWSTSAWW---IQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833
            + DE    VKR RRV  RKD++ S WW   ++L++    DHTT  A+ FR  FRVP+PFF+ LV+L + + WF  G  D  GR  +P ELKVL  LQIL RGN F DI  +S +S    A+TFH+ CK+FA E+++E++YLPTG     VM  YD++G  GA+GSTDVTHI WGMCP+   R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD  V  I+T+  Y +  YKL   DG   E KGCYL+VDNGYH+   +  PS+
Sbjct:   85 EDDEASREVKR-RRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSK 359          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 7.790e-96
Identity = 178/368 (48.37%), Postives = 214/368 (58.15%), Query Frame = 3
Query:   12 EDSDEDE----PPVKRPRRVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTAL-----QILGRGN----------CFDDILQL---------------------------SLMSKSMAAATF---------------------------------HK*CKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGY---------HEVNAVGR-PSRKREAI 848
            EDS+++E    P  KR RRV QR+DW TSAWW QLQ  DL DHTT AA VFR RFRVP+PFF  LVKL++ K+WFS G KD   R GIP ELK+ T+      Q+ G  N           FD+ + L                           + +  +M   T                                  HK C+HFA EMF+EHIYL TGTY  +VM ++ +LG TGA GST+VTHIGW MCPFTLGRS+TGKEGFPTIA +VTVDHAGR +A+T GFTG+TNDKTIIRYD+GVN I+TE QY +  YKLRKA+GT R R+GC+LIVDNG          H  N V + PS +R  I
Sbjct:   46 EDSEDEEEVVGPKAKRTRRVTQRRDWRTSAWWEQLQHVDLADHTTAAATVFRGRFRVPYPFFQNLVKLSRAKRWFSPGEKDTANREGIPLELKLRTSTPVEDEQVDGTSNHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTHKFCRHFAAEMFDEHIYLLTGTYLDEVMGIFHQLGCTGACGSTNVTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERTRRGCFLIVDNGMSVPKDLCVVHHKNIVAKLPSSERVLI 413          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 5.260e-89
Identity = 146/258 (56.59%), Postives = 176/258 (68.22%), Query Frame = 3
Query:   66 RKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833
            + D ST AW   L+D DL D T+ AAK FR  FRVP+PFFL LV+L K K WF+   +DA GR   P E KVL  L ILGRGN F  I  LS MS       FH+ C+HFA EM++EHI+LP+    + D VM  Y+KLG  GA+GSTDVTHIGW  CP+  GRSYTGKEG PT+ YQVTV+HAGRV+A+T GFTGSTNDKTII  D  V+ I+T+ QY +  + + K DGT    KGCYLIVDNGYH+   +  PS+
Sbjct:   57 KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSK 314          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.100e-87
Identity = 145/263 (55.13%), Postives = 174/263 (66.16%), Query Frame = 3
Query:   33 PPVKRPR---RVKQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHE 806
            P + RPR     +QRK     AW   L+D DL +  +  +K FR  FRVP  FFL LV L K K WF+  G DA GR   P E KVL  L ILGRGNCF  I Q+S MS +   A FH  CKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHI W  CP+ L RSYTGKEG PTI YQVTV+HAGR  A+T GFTGSTNDKTI+ +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+
Sbjct:   41 PDLTRPRLSRTQRQRKYVERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHK 303          
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 1.350e-87
Identity = 140/260 (53.85%), Postives = 173/260 (66.54%), Query Frame = 3
Query:   60 KQRKDWSTSAWWIQLQDGDLLDHTTDAAKVFRTRFRVPHPFFLELVKLAKGKKWFSEGGKDAVGRSGIPTELKVLTALQILGRGNCFDDILQLSLMSKSMAAATFHK*CKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSR 833
            ++RK+    AW   L+D DL D  + ++K FR  FRVP  FFL LV L K K WF+  G DA  R   P E KVL  L ILGRGNCF  I Q+S MS       FHK CKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHIGW  CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+   +  P++
Sbjct:   26 RKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTK 285          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE1.850e-15159.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE1.560e-12766.43DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KH50_9PHAE3.790e-10568.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.210e-10055.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE1.040e-9777.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.230e-9753.99Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE7.790e-9648.37DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JBE2_9PHAE5.260e-8956.59Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI1.100e-8755.13Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE1.350e-8753.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1364937..1367095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue3.5e-42
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1303
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.492.1prot_C-linearis_contig10.492.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1366197..1366661 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927334.3894691-UTR-C-linearis_contig10:1364936..13652141622927334.3894691-UTR-C-linearis_contig10:1364936..1365214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1364937..1365214 +
1690879632.8586094-UTR-C-linearis_contig10:1364936..13652141690879632.8586094-UTR-C-linearis_contig10:1364936..1365214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1364937..1365214 +
1622927334.3983345-UTR-C-linearis_contig10:1366070..13661961622927334.3983345-UTR-C-linearis_contig10:1366070..1366196Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1366071..1366196 +
1690879632.8688803-UTR-C-linearis_contig10:1366070..13661961690879632.8688803-UTR-C-linearis_contig10:1366070..1366196Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1366071..1366196 +
1622927334.4168918-UTR-C-linearis_contig10:1366661..13670951622927334.4168918-UTR-C-linearis_contig10:1366661..1367095Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1366662..1367095 +
1690879632.887459-UTR-C-linearis_contig10:1366661..13670951690879632.887459-UTR-C-linearis_contig10:1366661..1367095Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1366662..1367095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927334.4070854-CDS-C-linearis_contig10:1366196..13666611622927334.4070854-CDS-C-linearis_contig10:1366196..1366661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1366197..1366661 +
1690879632.8770766-CDS-C-linearis_contig10:1366196..13666611690879632.8770766-CDS-C-linearis_contig10:1366196..1366661Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1366197..1366661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.492.1

>prot_C-linearis_contig10.492.1 ID=prot_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=155bp
MFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRS
YTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKT
EGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEVNAVGRPSRKREAIAT
TLNI*
back to top

mRNA from alignment at C-linearis_contig10:1364937..1367095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.492.1 ID=mRNA_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2159bp|location=Sequence derived from alignment at C-linearis_contig10:1364937..1367095+ (Chordaria linearis ClinC8C monoicous)
CCATTGAGTGGGAGGACAGTGACGAGGATGAGCCGCCCGTGAAGCGTCCG AGACGAGTGAAGCAGCGCAAAGACTGGTCGACCTCTGCATGGTGGATACA GCTGCAAGATGGGGACCTGTTGGACCACACAACGGACGCAGCAAAGGTCT TCCGCACTCGCTTTCGCGTACCTCACCCCTTCTTTCTGGAGCTGGTCAAG TTGGCCAAGGGGAAGAAGTGGTTCTCTGAGGGAGGAAAGGATGCTGTCGG GCGCTCCGGGATACCGACTGAACTCAAGGTGAGCTACACGGCTGCTGCTG AATGGCCGCAGTCCTCCTGTGTAAACTACAATGTGCAATATTTGTTGGTG ATGACCACCACAAACAGGCTGCTCCGTTCTCCAGACACATGAGAAGTTCT TGCCCTCCGTTGCCACCCGACGTCTCTGCTATTCCCCAAGCAAACCCTTT GTTGAACTGTGATCCAAAGCACCGACGACTCTCTTTCTCCTGGCCATTCT GGCTCTATCGCACAAGAACTGCGAGATACGTTTGGTGTGGTGTACGCTCG TGTTCCAATGCGGTCGTGTGCGATGTCTCCGCCTGGATAGACTATATGCG AAGCACAGCAAGAACACAAGCGTTGCCTCTGCTGCATTACTCTGAGTCTG GTACAACACAGAGGCTGGTAGATTAAGAGTGCTTTGCCGAACACTCAGCC AGTTCGTCAGACCGTAGTTTTTGATTTGTATTCACAGCAGCAGGCTGACC TGGAAGCAGCACTGTAATCCGTTAGCAAGGCGGCAGGTGCCTTACACCCC ACGCGCAGGTCGCATCGCTGCGAAGCAAGACTCTTGCAGTAAAATCGCAC ATCGTTGGGATAGACACGTCGGGACTACAAGTAGCCGCCAAAGTTGTGCT TTCTGGTTCTGCTACAAATGTGGCACACTATTGAATGCACCAGCCCGGTG CTCGGCAAACCACGCCCTCCCTGTCAACTGCGGAGTGTAGTTATTATATA AACATCGCTGACCACGTTTTAATGTGGCCGATGCTATAGATCGTGACGCC GACTCTGCTTAAACAACGATTAATTTAGTACACCGTGGCCAATGGTTCCT TTCGCACATGCCTTCTCCCCACACTCTCCTGCAGGTATTGACGGCCCTCC AGATACTGGGCAGGGGCAACTGCTTCGACGACATCTTGCAGCTGTCGCTG ATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAAATAATGCAAGCATTT TGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACC AGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATC GGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCT TGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAG TGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACC GGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGC CATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGG CGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAAC GGGTACCACGAGGTAAATGCAGTTGGGCGCCCTTCGAGAAAGAGAGAGGC GATAGCCACGACGTTGAACATTTGAGGTACAGCAGTAACCGTAAACATAC CCCATAACGTAACCCCAAGTGTTATCTCTGTCGACGGTTATTGAAAAAGC TGGGTCGGTGCGTCGGGCGCGCGGTAGAACTCTTTGCTGGCGTGTGTTCG GTACGTTTGTTCAACGTTTGGATGCAGATATGTAGCAAGTGTTCACAGGA AGCCACTGGTCGGCCATAGATTAGGCGGAAAGCTCGTAGCCAATGGCGAC CTCCTCCGGGTGCGAGGTTGCGGTTGGATAATGTTATATCCGTGTGATTT TATTTTGTCAACCAAAGTCCGGAGCACGCAAGACCCGCCCTCTATTTACC CCCCACCATGTCGTTCGAAACCTCAACCGCTTTTTGCCCTCCCAAACAGT GGGTGACCCTCATTGCTCCCTCCAAGTACCCGGCGAACAACGAGGACACC GCTTTCTCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:1364937..1367095+

>mRNA_C-linearis_contig10.492.1 ID=mRNA_C-linearis_contig10.492.1|Name=mRNA_C-linearis_contig10.492.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=930bp|location=Sequence derived from alignment at C-linearis_contig10:1364937..1367095+ (Chordaria linearis ClinC8C monoicous)
ATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACCAGGCGGACGT
CATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATCGGATCTACCG
ACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCTTGGCCGTTCT
TACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAGTGACAGTCGA
CCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACCGGCTCGACCA
ATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGCCATCAAGACG
GAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGGCGGATGGGAC
TTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAACGGGTACCACG
AGGTAAATGCAGTTGGGCGCCCTTCGAGAAAGAGAGAGGCGATAGCCACG
ACGTTGAACATTTGAATGTTCGAGGAGCACATCTACCTCCCTACCGGAAC
GTACCAGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGGGG
CCATCGGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTC
ACCCTTGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTA
CCAAGTGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTT
TCACCGGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTGTG
AACGCCATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCG
GAAGGCGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCG
ACAACGGGTACCACGAGGTAAATGCAGTTGGGCGCCCTTCGAGAAAGAGA
GAGGCGATAGCCACGACGTTGAACATTTGA
back to top