mRNA_C-linearis_contig10.490.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.490.1
Unique NamemRNA_C-linearis_contig10.490.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A6H5KM04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM04_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.120e-115
Identity = 206/332 (62.05%), Postives = 247/332 (74.40%), Query Frame = 3 
Query:   18 FSEQTQLEEMKRAIMLAALPLAWAAS--PAFVHPT-------ALTANRPKLGDVSATSSAIAPQPCCRLAKN--QQQRRRGRQLEASLGGAGSPSAASAVVSSASAVLAWSPTALVAVVGVLFAASVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPE 980
            F  + +   MKRA +L  +PL  +AS   AFV P        A T NRP+L   +++SSA A     R A++  +QQR+RGR L ASLGG G P  A+ V+SS S V++W       +VG L AAS+ N LQG    DLG T +KILGVPAEEATA+HV++LGKAGFMQLF+AS CP  GDLDGEYRARTL MG+LHP+T IITHR++GPGRWLGKGIRTGS EGYNLF     A ES+G G LPSDT+RER F+FSQ+SDSVFDRG SS LDY++AG +NGPLFGGMRDEVRKVNDKLF+GLGYI+  GGKYNSAPF++EGPPV  FS+P+
Sbjct:   30 FQPRLKQGSMKRAFVLTVVPLVSSASLAAAFVCPAPATATSAAFTPNRPRLAGDASSSSASATIAPLRPARDLHRQQRQRGRHLVASLGG-GVPEVAAVVISSTSYVVSW-------LVGTLVAASIANFLQGRPYSDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPVTGDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLF-----ASESKGIG-LPSDTQRERCFRFSQSSDSVFDRGVSSELDYARAG-KNGPLFGGMRDEVRKVNDKLFIGLGYIQAFGGKYNSAPFVMEGPPVGEFSSPD 346
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: D7FZY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY5_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 8.440e-97
Identity = 186/306 (60.78%), Postives = 215/306 (70.26%), Query Frame = 3 
Query:   45 MKRAIMLAALPLAWAAS--PAFVHPT-------ALTANRPKL-GDVSATSSAIAPQPCCRLAKNQQQR-RRGRQLEASLGGAGSPSAASAVVSSASAVLAWSPTALVAVVGVLFAASVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNS 929
            MKRA +L  LPL  +AS   AFV P        A T NRP+L GD SA+S                   +RGR L ASLGG G P  A+ VVSS S+V++W       +VG L AAS+ N LQG    DLG T +KILGVPAEEATA+HV++LGKAGFMQLF+AS CP  GDLDGEYRARTL MG+LHP+T IITHR++GPGRWLGKGIRTGS EGYNLF+     G    G GLPSDT+RER F+FSQ SDSVFDRG SS LDY++AG +NGPLFGGMRDEVRKVNDKLF+GLGYI+  G   N+
Sbjct:    1 MKRAFVLTVLPLVSSASLAAAFVCPAPATATSAAFTPNRPRLAGDTSASSXXXXXXXXXXXXXXXXXXXQRGRHLVASLGG-GVPEVAAVVVSSTSSVVSW-------LVGALVAASIANFLQGRPYRDLGLTPDKILGVPAEEATADHVARLGKAGFMQLFYASQCPATGDLDGEYRARTLNMGVLHPITAIITHRIWGPGRWLGKGIRTGSREGYNLFT-----GSEAKGIGLPSDTQRERSFRFSQFSDSVFDRGVSSGLDYARAG-KNGPLFGGMRDEVRKVNDKLFIGLGYIQAFGDTGNN 292
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A5K7Z8H1_9DELT (Uncharacterized protein n=1 Tax=Desulfosarcina widdelii TaxID=947919 RepID=A0A5K7Z8H1_9DELT)

HSP 1 Score: 146 bits (369), Expect = 8.010e-35
Identity = 90/200 (45.00%), Postives = 116/200 (58.00%), Query Frame = 3 
Query:  366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPP 956
            +N LQ G  G  G + E+ILGVP E+AT   + +L K+  MQLFH++T P   DL GEY+A+ L +GI+ P     T   FGPGRWLGKG    + +   GYNLF       E EG G +     R R  K S  + SVFDR  S +LDYS      GP+ G MRDE+RK+N  LF+G+GY+   GG  N  PF++ G P
Sbjct:  306 INILQNGSSGWDGRSMEQILGVPPEQATLADIERLSKSEVMQLFHSATPPTLSDLQGEYQAKNLAVGIMAPAADFYTQHFFGPGRWLGKGFTAEAAQNGQGYNLFQ------EKEGDGTI----WRTRRMKTSVGT-SVFDRKESFKLDYSVY--NKGPVHG-MRDELRKINPALFIGMGYMPIGGGSINPGPFVVYGNP 491
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A7C1GQ52_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C1GQ52_9DELT)

HSP 1 Score: 131 bits (329), Expect = 9.280e-32
Identity = 80/211 (37.91%), Postives = 111/211 (52.61%), Query Frame = 3 
Query:  360 SVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPEG 983
            +++N LQ G+ G  G + E+ILG+  E+AT + + +L KA  MQLFHA+  PD   ++GEYRA  L +GIL P     TH  FG G W GK       +   GYN+FS +G            + +R  +F  +     S  DR  +  LDYS     N  +   M DEVR++ND LF+ +G++   GG  N APF+L GPP       EG
Sbjct:   22 TIINILQNGLGGYKGRSVEEILGISPEKATLKDIQRLTKAQVMQLFHAAPAPDFASMNGEYRAELLPLGILAPSAAFYTHHFFGSGHWEGKAFFPFEDQRGWGYNIFSKKG------------TLSRMRKFNSYC--GPSTIDRKPAFHLDYSP---HNSGIVHSMHDEVRQINDHLFICMGHMALGGGAVNPAPFVLMGPPTPWIGCSEG 215
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N2F743_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-9 TaxID=2013759 RepID=A0A2N2F743_9DELT)

HSP 1 Score: 124 bits (311), Expect = 2.390e-29
Identity = 81/202 (40.10%), Postives = 107/202 (52.97%), Query Frame = 3 
Query:  366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGI---RTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVR 962
            +N LQ G + D G + EKILGV  E+AT   + KLGKA   QL++A+T P   D +GEY A TL++GI+       TH  FGPGRW GK           GYN+F    G             T R R    ++   S  D   + +L+Y   G+ N      MRDE+RK+ND LF+GLGY+   GGK N APF++ GP  +
Sbjct:   13 INILQKGGKYD-GRSMEKILGVAPEKATINDIKKLGKAEVFQLYYAATAPSFQDFNGEYTAATLDVGIMATSAEYYTHHFFGPGRWEGKAFYPFEKNKGYGYNIFKDATGK------------TYRTRKMD-TEIGLSDHDGKPAFKLNY---GAYNSGTVNSMRDELRKINDNLFIGLGYMALGGGKINPAPFLVIGPATK 197
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N1TA87_9SPIR (Uncharacterized protein n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-1 TaxID=2013832 RepID=A0A2N1TA87_9SPIR)

HSP 1 Score: 124 bits (312), Expect = 2.640e-29
Identity = 81/199 (40.70%), Postives = 106/199 (53.27%), Query Frame = 3 
Query:  366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQ-NSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEG 950
            VN LQ G+ G  G T ++ILGV AE+AT   + KL K+  MQLF+A+  P  G + GEY+A+T+ +G++       TH  FGPG W GK       +   GYNLF+ +   G           TR  R  K +     S  D   S  LDYS     NG L   M DEVRK+ND+LF+ +G++   GG  N APFIL G
Sbjct:   24 VNILQNGIGGWDGRTVDQILGVSAEKATPADIEKLSKSEVMQLFYAAPAPAFGTMKGEYKAKTISVGVMAASADYFTHHFFGPGHWEGKAFFPFEKDKGWGYNLFTVKNSDGT----------TRIARTRKMNNWVGKSTMDDRDSFHLDYSPY---NGGLVKSMHDEVRKINDRLFICMGHMAAGGGAINPAPFILYG 209
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A3A4Q0Y7_9DELT (Uncharacterized protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3A4Q0Y7_9DELT)

HSP 1 Score: 120 bits (301), Expect = 1.100e-27
Identity = 82/207 (39.61%), Postives = 111/207 (53.62%), Query Frame = 3 
Query:  366 VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGR------WLGKGIRTG---SPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASS-RLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPP 956
            +N LQ G +   G T  +ILGV  E A  + V KL +   MQLF+A+  PD   L+GEY A+ L  GIL P + + TH VF  GR      W+GKG +     S +GYNLF+ +   G +E        T R R  K +     V   G  S ++DYS   ++N  +   MRDE+R++N+ LF+G GY+   GG  N APF L GPP
Sbjct:   24 INILQAGPKIPDGRTMAQILGVAPETAVFDDVEKLSRKDKMQLFYAANTPDIRALNGEYEAKLLSGGILGPSSALFTHHVFPTGRVTPRTRWVGKGFKPNDENSGKGYNLFTRKKPGGTAE--------TLRIRPMKTALAVSKVGKDGKRSFQVDYS---ADNTGMIHSMRDEIRQINENLFIGAGYMALGGGPINPAPFALIGPP 219
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A847ZAA1_9DELT (Uncharacterized protein n=1 Tax=Smithella sp. TaxID=2053614 RepID=A0A847ZAA1_9DELT)

HSP 1 Score: 120 bits (300), Expect = 1.110e-27
Identity = 84/208 (40.38%), Postives = 114/208 (54.81%), Query Frame = 3 
Query:  345 VLFAASV--VNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIR-TGSPEGY--NLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGP 953
            +L AA+V  +N LQ G   D G + E+ILGV  ++AT E + KL KA   QL++A++ P   +  GE+ A T+++GIL       TH  FGPGRW GK    TG   GY  NLF         +  GG    TRR      ++   S +D   + +L Y   G+ N      MRDE+R++ND+LF+GLGY+   GGK N APF L GP
Sbjct:   15 ILLAAAVTGINILQKGGAWD-GRSMEEILGVAPQKATLEDIRKLNKAEIFQLYYAASAPSFQEFKGEFAAVTVDVGILASGAAYFTHHFFGPGRWEGKAFNPTGENRGYGYNLF---------QDAGGKIYRTRRMD----TEIGPSDYDGKPAFKLHY---GAYNSGTVHSMRDEIRRINDRLFLGLGYMALGGGKINPAPFALVGP 205
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: A0A2N2HJG1_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-19 TaxID=2013746 RepID=A0A2N2HJG1_9DELT)

HSP 1 Score: 117 bits (293), Expect = 1.170e-26
Identity = 72/187 (38.50%), Postives = 100/187 (53.48%), Query Frame = 3 
Query:  402 GFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRTGSPE---GYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGP 953
            G T E+ILGV   +AT + + KL KA   QLF+A+  P   D+ GEY A+TL +GIL       TH  FGPGRW+GK       +   GYN+FS +G     + G  + + TR+   +       S+ D   S  LDYS     N      M DE+R++ND + +G+GY+   GG  N APF++ GP
Sbjct:   35 GQTMEQILGVDPAKATDKDIGKLDKAAIFQLFYAAPAPKFEDVKGEYNAKTLPVGILAMSADYFTHNFFGPGRWVGKAFAIAEKDKGWGYNMFSTKG-----KDGSEVIARTRKMNTYL----GKSLIDGKESFHLDYSPY---NSGAVHSMHDELRRINDHIMIGMGYMGLGGGSINPAPFLVIGP 209
[Close]
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Match: B8FL22_DESAL (Uncharacterized protein n=3 Tax=Desulfatibacillum TaxID=218207 RepID=B8FL22_DESAL)

HSP 1 Score: 116 bits (290), Expect = 1.780e-26
Identity = 76/210 (36.19%), Postives = 107/210 (50.95%), Query Frame = 3 
Query:  360 SVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQLFHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKG---IRTGSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASSRLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFILEGPPVRPFSAPE 980
            +++  +  G +G  G +   +LGV    ATA+HV  LG    MQLFHA   P    L+GEY A  L++G+L  + + I+H +FGPG W GKG   ++     GYN+FS + G+G +           R R          + DR  S  LDYS     N      MRDE+R++N  LF+G+GY+    G    APFIL G P  P+  P+
Sbjct:    4 AILERILMGFKGWNGCSMGDVLGVDPNSATADHVRNLGWKEVMQLFHAGITPKMDALNGEYNAEVLDVGVLAFLASFISHNLFGPGHWDGKGFKPLKEARGWGYNIFSGKNGSGPA-----------RVRKMNTRLGMSRIDDRD-SFLLDYSV---HNKGFVKTMRDEIRQINPDLFIGMGYLGEATGPLTPAPFILHGKPS-PWKGPD 197
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM04_9PHAE2.120e-11562.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZY5_ECTSI8.440e-9760.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A5K7Z8H1_9DELT8.010e-3545.00Uncharacterized protein n=1 Tax=Desulfosarcina wid... [more]
A0A7C1GQ52_9DELT9.280e-3237.91Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A2N2F743_9DELT2.390e-2940.10Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A2N1TA87_9SPIR2.640e-2940.70Uncharacterized protein n=1 Tax=Spirochaetae bacte... [more]
A0A3A4Q0Y7_9DELT1.100e-2739.61Uncharacterized protein n=1 Tax=Desulfobacteraceae... [more]
A0A847ZAA1_9DELT1.110e-2740.38Uncharacterized protein n=1 Tax=Smithella sp. TaxI... [more]
A0A2N2HJG1_9DELT1.170e-2638.50Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
B8FL22_DESAL1.780e-2636.19Uncharacterized protein n=3 Tax=Desulfatibacillum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1341823..1346643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue7.1e-82
Seed eggNOG ortholog2880.D7FZY5
Hectar predicted targeting categorychloroplast
EggNOG OGs2EAKV@1,2SGUA@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_003620.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1528
Cds size948
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.490.1prot_C-linearis_contig10.490.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1341867..1346107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927334.026235-UTR-C-linearis_contig10:1341822..13418661622927334.026235-UTR-C-linearis_contig10:1341822..1341866Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1341823..1341866 +
1690879632.5642855-UTR-C-linearis_contig10:1341822..13418661690879632.5642855-UTR-C-linearis_contig10:1341822..1341866Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1341823..1341866 +
1622927334.081649-UTR-C-linearis_contig10:1346107..13466431622927334.081649-UTR-C-linearis_contig10:1346107..1346643Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1346108..1346643 +
1690879632.6171513-UTR-C-linearis_contig10:1346107..13466431690879632.6171513-UTR-C-linearis_contig10:1346107..1346643Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1346108..1346643 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927334.03652-CDS-C-linearis_contig10:1341866..13422931622927334.03652-CDS-C-linearis_contig10:1341866..1342293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1341867..1342293 +
1690879632.5773249-CDS-C-linearis_contig10:1341866..13422931690879632.5773249-CDS-C-linearis_contig10:1341866..1342293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1341867..1342293 +
1622927334.0472662-CDS-C-linearis_contig10:1344711..13448501622927334.0472662-CDS-C-linearis_contig10:1344711..1344850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1344712..1344850 +
1690879632.5865905-CDS-C-linearis_contig10:1344711..13448501690879632.5865905-CDS-C-linearis_contig10:1344711..1344850Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1344712..1344850 +
1622927334.0596678-CDS-C-linearis_contig10:1345276..13455231622927334.0596678-CDS-C-linearis_contig10:1345276..1345523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1345277..1345523 +
1690879632.595813-CDS-C-linearis_contig10:1345276..13455231690879632.595813-CDS-C-linearis_contig10:1345276..1345523Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1345277..1345523 +
1622927334.0694363-CDS-C-linearis_contig10:1345972..13461071622927334.0694363-CDS-C-linearis_contig10:1345972..1346107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1345973..1346107 +
1690879632.6076214-CDS-C-linearis_contig10:1345972..13461071690879632.6076214-CDS-C-linearis_contig10:1345972..1346107Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1345973..1346107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.490.1

>prot_C-linearis_contig10.490.1 ID=prot_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=316bp
MKRAIMLAALPLAWAASPAFVHPTALTANRPKLGDVSATSSAIAPQPCCR
LAKNQQQRRRGRQLEASLGGAGSPSAASAVVSSASAVLAWSPTALVAVVG
VLFAASVVNALQGGVRGDLGFTQEKILGVPAEEATAEHVSKLGKAGFMQL
FHASTCPDAGDLDGEYRARTLEMGILHPVTTIITHRVFGPGRWLGKGIRT
GSPEGYNLFSPRGGAGESEGGGGLPSDTRRERFFKFSQNSDSVFDRGASS
RLDYSKAGSENGPLFGGMRDEVRKVNDKLFVGLGYIRHLGGKYNSAPFIL
EGPPVRPFSAPEGAE*
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mRNA from alignment at C-linearis_contig10:1341823..1346643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.490.1 ID=mRNA_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4821bp|location=Sequence derived from alignment at C-linearis_contig10:1341823..1346643+ (Chordaria linearis ClinC8C monoicous)
CAGTAACAGGACCACACTTCAGCGAACAAACACAGCTGGAGGAAATGAAG
CGCGCCATCATGCTCGCCGCTCTGCCACTCGCGTGGGCCGCCTCGCCAGC
TTTTGTGCATCCTACTGCCCTCACTGCGAACAGACCAAAGCTGGGTGACG
TATCCGCAACGTCTTCGGCGATTGCACCGCAACCGTGCTGCCGCCTGGCG
AAGAACCAGCAGCAGCGCCGGCGCGGGAGGCAGCTGGAGGCTTCGTTGGG
TGGTGCTGGCTCTCCATCTGCGGCTAGTGCGGTGGTTTCGTCGGCCTCTG
CTGTTCTGGCCTGGTCGCCGACTGCCCTTGTGGCGGTGGTCGGCGTCCTC
TTCGCGGCCAGCGTTGTCAACGCTTTGCAGGGCGGCGTGCGCGGCGATCT
TGGATTCACCCAGGAAAAGATTCTGGGGGTACCGGCGGAGGAAGCTACCG
CTGAGCATGTCTCTAAGCTAGGTGTGTGATTTTTGGGTTGTTTTGCTCTG
TGTGGTTTGTTCTTATAGGAACATGTTCAACCTCTATCAAGGACATGGGT
GCTGATCATGAAGTTCCAGCTGGATGCGCTTGAACTTCTCAGCTGCTCCA
TGTGCCGCCTCCGCCCCCCCCTGCTCCGCGATTTCCGGGGCTTTGCGCCT
TCAATGGTGTTCGATCCATGATAACGGCAGCATGATCGACTCTGTTGTAG
TTAAGTGGACGGGGTTTTGAGAGAGGTCAGGCGAAGAGATTTTTGCAACG
CGCGGCTGATTTTGAAAATTTGAAAGTAAGCCGGTGCAGACTACAACAGC
TAGTGGCAATTTAGCAGATTGTTCCCTAATGCACTACACCGGTCGCCCCG
GTGGTCTAGTTGGTATCCCCGCACACCTTCTAGCGCCCAGGTCACGGGTT
CGAATCCCGGCGTATGCGATCTTTTCTCACAAAAAAAGCCGTGAGTGTTT
CTCTCAAATACGTCCCTGGTTGTTTGGGAGAGCGCTGTTAATATTAATAG
TTGTGTGTACACAGAGGGAAGAGATTGCCGCGCTCTTCTCGCATTAAAAA
GCAAAGGCGAAGCACCGCAAGAGGGGAGGGTGGGGGACCTCAGGGAGAGG
AACCCTTCTGTGTGACCACGGGCTAGAGCTCCTATCTGGCAGAAATGCTG
TGAGCTCTGGTTATACAAGTATACTTCGAAGTGAAGATAAAAAAAAAAAA
ATGCAACTGCTGCTGTAGATTCCGAAACTCCTTGTTTTTTTTTTTGTTTT
ATCCTCCCATTATTGGACTCTGTTGTCTGCCCCTCTGGCCCCCATCCGCC
ACTTCTACTAGCTAGACGACCCAACCGGGGTCACACAGGAGGGGGGGGTT
GGACCCCCTCCTGCGGTTCATGCCTTTGATGTTTTTATCGAGAGTAGGGT
TCAGCACTCCCTGCCCTCTCCGACTGTCTTTCAAGTCGATTCATTTACTA
ACGGGTATAGTGCCACCAGACAAGTTATCGCTTTCAAGTTTACCAGGAAC
GAATTTGAGAAAAAAACTCGCATTCGTCGGGATTCGAACCCATGACCTGG
TTTCTAGTAGGTTTGCGTGGTTACCTACTGCACTACCGGGGCGCGGCTGG
TCCTTGTGTGTGTGTGCGTGTCTGTGTCTTCGTCCCATTTATATTGGCGA
CAGTCCCTTTCCGATCAAGGCGAGACGTGCACTACACGTTGCGGTGTATT
TGAGTACTCCACTTGTTCAGTGTATTTTTCTGTACAACTAGATCCAACGG
GGTCACACAGGAGGGGGTGAACACTGGGGCTTTTTTCTTCTTCTCTGTTT
CTTTTTTGCCCCACCTTCATCCCGCGGTGCTTGCCTTGGATTTTATCGCG
AGAAGGGTGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGAAGTTT
GGTAATCACGAGATTTTTCAGCTATGTTATCGCTTTCACCGGCAAAGTCG
CAAAATAATCACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGCTACAA
TAGTGGGTTCGAGATTAAACCACTAGGCCACCGGAGCGACCGACCGGCTT
GTAGAGCGACGAAATTTCAGAGTCGTCGGTGAAAAAACTATCTCCAGGAG
AGAACTGCTGCCACGTGCCTGTCAATCGTGTACACGAGGCATCAGAGTGT
TGGTGGAAGCACCGGAACGATTATGCGCCTCAAGTTTTGCTTCGCGAATG
TCACCGACAACCCGAGGTCGCCGTGCAAGTATTGTACCCACCACCTTTTG
CCAACAGTCACTCAGCACCCTACCGTTGTTGTCTCATCACCCCGCTCTCA
ACCACAAAGCCACACAGCCTCTCTTATATTTGGCATACGTTTTGAAGCTC
CAAACAAGGCACGGGGATGCCCCATCCACCGCGGTAAAGATGTGGTACAG
CAGTACGTAGCTGCGGTTTCCTGAACGTTTGAGGACTCTCAGGCAGGCTC
CGATCGTTTCATCATGATCCTTCCAGAATGATTTCGTCGGGTTTTTGCTC
TTGCGGCCCGGCTCTTTACCTCTGCCGGGTCTTTTCAGGCTAAATTAGGC
ATGGTGCGCGCCTTTCGAACGTGGACCGATGTGAGACGCTGCTCCTGTGA
GGCTTGCTTCCCGTCGCCGCTGCAGAAACTCCCACTCGCTCAAGCTCGGC
CTTTTGTCGTGTGCCAAGCACTCGCTACCCACCCCTCCTGTGCACCTTTC
CGTCGCGATCGAACTCCGTGGCGTCCTTCCTACCTTTGTATCTTCCAGTT
TGGTAACGTTTCGAAACATCAGCAGCTTGGTATGCAACAACATCCAGCCT
GTGAAGGCACCTACGTTTTGGTAGAGAAGTACAGGATAACCCTCCGCCTC
CGCCTCGGCCGTCTGCGCCATGCTATGCTACCAACATAGGCAAGGCGGGG
TTCATGCAGCTTTTTCACGCCAGTACGTGCCCAGATGCGGGAGACCTAGA
CGGGGAGTACAGAGCCCGCACGCTGGAGATGGGCATCTTGCACCCAGTCA
CGACCATCATCACGCACCGGGTGTTCGGGTGAGACCACGCGGTTGGTATC
CTACAAGCTTGGGGCGCGCGGGGGGGGGGTGAGTAGAGCTCGCGGCCACG
GTCTGTTCGTGGGTGATGAATCATTTCTTCGTGCATCCAGGTAGCAAGAA
GACCCCTTTTTCCGAGAATATCGACGAAATTGCTTTCTGACTTGCGCCGG
TCGGGGGATTCTTTGTGTGTACTTCTAAGTACTAACAATAACAAGTGTTG
CTGCCACCATGGAATCGAGCGCCATGCGAAACTTCACTTCACTGCTCGTT
CGATGACGCTACGCGGCTGCTGTACCCACTCAGGATTCCACTGCGACGGA
GCGCACGCGGACGGCGTATTTATTCAATTTTCGCCGCGTTCTTGCGCCGA
GGTCTGAAACTTCCCTCCCCCGCCGCCGCAAACACCCGTGACACAATCAC
ACAGGCCAGGAAGGTGGCTCGGTAAGGGCATCCGCACCGGCAGCCCGGAG
GGCTACAACCTCTTCTCTCCAAGGGGCGGTGCTGGAGAGAGTGAGGGTGG
TGGTGGTCTTCCGAGCGATACGCGAAGGGAACGATTTTTTAAGTTCTCTC
AGAATTCGGACAGCGTGTTCGACAGGGGGGCGTCGTCGAGGCTCGACTAC
TCCAAGGCGGGCAGCGAGAACGGGCCGCTGTTTGGCGGCATGCGCGACGA
GGTGGGGGGGGGGGTTGTGGTTTGTATCCTGGTGGGTGACGTTGGTGGCC
GTGTTGATTGCGTTTTAGCGGTGTCGAGTGGATGGCCGTGATCTTCGCTG
TTTGCTGCTGTTGCTGTTTATTCTTCGAAGCATACACTCTTTCTCGCATT
TAAAATCAAAGGCGAAACACCGCGGGAGGGGATGGCGGGGCGCCCCAGGG
AGAGGAACCCTTCTGTATGACCACGCACGGGCTAGAGCTCCTATCCGGCA
GAAATGCTGCGAGCCCTGGTTATACTTAAATGTAAAGACAAAAAAAAAAA
CAGCAGCAGCAGCAGCAGCAGCAGCGTTGCTGCCCTTTTTCTCGAGCGTT
GAAGGAGTCGGCTCGGTATTTTCTAACCATGGTGTAGTCTGCAGCAGTGG
CATGGAACGACTTGTCTGGGCGTTTTCTGTTTGTTTCGTCTTTTTTGCAG
GTTCGAAAAGTGAACGACAAGCTGTTCGTGGGGCTGGGCTACATCCGACA
CCTCGGCGGCAAGTACAACTCGGCCCCGTTCATCCTCGAGGGGCCGCCGG
TGCGGCCCTTTTCCGCGCCGGAAGGCGCCGAGTAGACAAGGAGTTCCTCG
TCACAACGGTCGACTTGATCGAAAGTTTTGCTTGCATTTTCGTGTCCCGC
TCGCTCGCGTCGGAATTGGGGTGAACTTGATAGACAGACATCTTCCGAAG
CTGATATTTGGGGGGGGGTTGTTTCGTGGACGTTTTTTTTCTTTCTTTTA
CTGTAGGTTGCTAAAGGGTGAGTCCATGGTGGGAAACGTAAAAATGTGAC
CCACTTTTCTCCTCTCCCCACCCCACCCCCCCCAGGAGGTATGACGTGTA
GTTTCTATCTTGGTGGTGTTAGACTAGGTCTTTGTCTTGCTTGTTTCTTA
CTTGTCTTTTTATTTTTCTTCCTTTTTTTGTTTTTTTATTTTTCCTTTTG
CCTGTTTCCGCTCCCTACCCGTTGTCTTGGGTCTGTGCTGCACTTCGAAG
AACGGGGATACATCGGTAGTACGGGGAATATTTTCCTTTCCCCGTGCCAT
GTCTGCATGTCTGCGTTTTATAATCGGGGTGGAGGACTCGATTTGTCTGC
CTGGCCGGCGGGAACCCGGCA
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Coding sequence (CDS) from alignment at C-linearis_contig10:1341823..1346643+

>mRNA_C-linearis_contig10.490.1 ID=mRNA_C-linearis_contig10.490.1|Name=mRNA_C-linearis_contig10.490.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at C-linearis_contig10:1341823..1346643+ (Chordaria linearis ClinC8C monoicous)
ATGAAGCGCGCCATCATGCTCGCCGCTCTGCCACTCGCGTGGGCCGCCTC
GCCAGCTTTTGTGCATCCTACTGCCCTCACTGCGAACAGACCAAAGCTGG
GTGACGTATCCGCAACGTCTTCGGCGATTGCACCGCAACCGTGCTGCCGC
CTGGCGAAGAACCAGCAGCAGCGCCGGCGCGGGAGGCAGCTGGAGGCTTC
GTTGGGTGGTGCTGGCTCTCCATCTGCGGCTAGTGCGGTGGTTTCGTCGG
CCTCTGCTGTTCTGGCCTGGTCGCCGACTGCCCTTGTGGCGGTGGTCGGC
GTCCTCTTCGCGGCCAGCGTTGTCAACGCTTTGCAGGGCGGCGTGCGCGG
CGATCTTGGATTCACCCAGGAAAAGATTCTGGGGGTACCGGCGGAGGAAG
CTACCGCTGAGCATGTCTCTAAGCTAGATGAAGCGCGCCATCATGCTCGC
CGCTCTGCCACTCGCGTGGGCCGCCTCGCCAGCTTTTGTGCATCCTACTG
CCCTCACTGCGAACAGACCAAAGCTGGGTGACGTATCCGCAACGTCTTCG
GCGATTGCACCGCAACCGTGCTGCCGCCTGGCGAAGAACCAGCAGCAGCG
CCGGCGCGGGAGGCAGCTGGAGGCTTCGTTGGGTGGTGCTGGCTCTCCAT
CTGCGGCTAGTGCGGTGGTTTCGTCGGCCTCTGCTGTTCTGGCCTGGTCG
CCGACTGCCCTTGTGGCGGTGGTCGGCGTCCTCTTCGCGGCCAGCGTTGT
CAACGCTTTGCAGGGCGGCGTGCGCGGCGATCTTGGATTCACCCAGGAAA
AGATTCTGGGGGTACCGGCGGAGGAAGCTACCGCTGAGCATGTCTCTAAG
CTAGGCAAGGCGGGGTTCATGCAGCTTTTTCACGCCAGTACGTGCCCAGA
TGCGGGAGACCTAGACGGGGAGTACAGAGCCCGCACGCTGGAGATGGGCA
TCTTGCACCCAGTCACGACCATCATCACGCACCGGGTGTTCGGGCAAGGC
GGGGTTCATGCAGCTTTTTCACGCCAGTACGTGCCCAGATGCGGGAGACC
TAGACGGGGAGTACAGAGCCCGCACGCTGGAGATGGGCATCTTGCACCCA
GTCACGACCATCATCACGCACCGGGTGTTCGGGCCAGGAAGGTGGCTCGG
TAAGGGCATCCGCACCGGCAGCCCGGAGGGCTACAACCTCTTCTCTCCAA
GGGGCGGTGCTGGAGAGAGTGAGGGTGGTGGTGGTCTTCCGAGCGATACG
CGAAGGGAACGATTTTTTAAGTTCTCTCAGAATTCGGACAGCGTGTTCGA
CAGGGGGGCGTCGTCGAGGCTCGACTACTCCAAGGCGGGCAGCGAGAACG
GGCCGCTGTTTGGCGGCATGCGCGACGAGGCCAGGAAGGTGGCTCGGTAA
GGGCATCCGCACCGGCAGCCCGGAGGGCTACAACCTCTTCTCTCCAAGGG
GCGGTGCTGGAGAGAGTGAGGGTGGTGGTGGTCTTCCGAGCGATACGCGA
AGGGAACGATTTTTTAAGTTCTCTCAGAATTCGGACAGCGTGTTCGACAG
GGGGGCGTCGTCGAGGCTCGACTACTCCAAGGCGGGCAGCGAGAACGGGC
CGCTGTTTGGCGGCATGCGCGACGAGGTTCGAAAAGTGAACGACAAGCTG
TTCGTGGGGCTGGGCTACATCCGACACCTCGGCGGCAAGTACAACTCGGC
CCCGTTCATCCTCGAGGGGCCGCCGGTGCGGCCCTTTTCCGCGCCGGAAG
GCGCCGAGTAGGTTCGAAAAGTGAACGACAAGCTGTTCGTGGGGCTGGGC
TACATCCGACACCTCGGCGGCAAGTACAACTCGGCCCCGTTCATCCTCGA
GGGGCCGCCGGTGCGGCCCTTTTCCGCGCCGGAAGGCGCCGAGTAG
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