mRNA_C-linearis_contig10.489.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.489.1
Unique NamemRNA_C-linearis_contig10.489.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: D7FZY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZY6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.820e-116
Identity = 157/183 (85.79%), Postives = 164/183 (89.62%), Query Frame = 3 
Query:  153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDRG 701
            MP IA FDG+ VEYVEVHDEPIHRRQFSND VYIYIAGFRPGETSLWHRHSENTLY+CVGH AAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVC LPENTH SHFFAMEILRPPP  +SR L+HRCY+LR EDSRPGLARVYDF+L+PGESTG H   F GVVLCLSDGGG LE D G
Sbjct:    1 MPKIAVFDGREVEYVEVHDEPIHRRQFSNDYVYIYIAGFRPGETSLWHRHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCLLPENTHNSHFFAMEILRPPPTCSSRALDHRCYSLRGEDSRPGLARVYDFRLKPGESTGPHTLGFSGVVLCLSDGGGSLEADGG 183
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A836CD60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD60_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.920e-48
Identity = 84/187 (44.92%), Postives = 113/187 (60.43%), Query Frame = 3 
Query:  153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQ------VCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGD 695
            M  +   DG+ ++YV VH+EP+H+ QF N+ V+ Y  G  PG+   WHRHSE++ Y+ +    A LNRP D+  +VH     D WW+M+K++P +HQ      VC L E    + FFA+EIL+ PPV +   L    Y +  E S+   ARVY   LEPG+STG+HKW F GVVL LSDG    EGD
Sbjct:    1 MTRMVTHDGEEIDYVSVHEEPMHKHQFDNEYVWCYRVGLEPGKMCKWHRHSEDSFYVALTDGKA-LNRPCDRPEYVHPIKQFDQWWSMAKTSPIIHQARYLPQVCLLAECPIAADFFALEILKSPPVTSDAPLNCPGYTVESEYSKD-KARVYQLSLEPGQSTGMHKWNFYGVVLSLSDGELSSEGD 185
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A836C8W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 3.120e-48
Identity = 81/180 (45.00%), Postives = 110/180 (61.11%), Query Frame = 3 
Query:  153 MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEG 692
            MP I+  +G+ VEYVEV+DEPIH+ QFSN+  Y YIA   PGE+ +WHRHS+++ Y+ +  +  A+NRPTDK     +   GD WW++ K+   VHQVC        + FF +E+L+ PPV +   L    Y L  +      AR+YD  L+PG+STG+H W F   VLCLSDG    EG
Sbjct:    1 MPTISILNGEEVEYVEVYDEPIHKCQFSNEYAYCYIATINPGESCMWHRHSQDSFYVALA-SCEAINRPTDKPEGELNLKAGDKWWSLYKAKDMVHQVCLPGTCAAPAKFFGVEVLKSPPVYSESPLGGNAYTLL-DQFTIDRARIYDMTLQPGQSTGMHTWNFFATVLCLSDGELSTEG 178
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A835ZHZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHZ6_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.570e-34
Identity = 69/167 (41.32%), Postives = 89/167 (53.29%), Query Frame = 3 
Query:  201 VHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKS-APYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDR 698
            VH EP+H +QFSN  VY Y     PG     H+H+E+T Y  +            KE F      G  WW ++K+  P VHQV       H S FFA+E L+ PP+     L+H  Y L  + SR G ARVY  ++ PGESTGIH+W+F  VVL +SDG    EG+ 
Sbjct:   24 VHAEPMHVKQFSNSWVYSYRVKLVPGRPCEMHKHTEDTFYRALTDGPCKAKTAEGKE-FDQDIKKGSQWWNLNKTEGPMVHQVTLAESFPHRSDFFALEFLKSPPIDGGEPLKHPAYTLDTKYSREGTARVYHLEIGPGESTGIHRWQFFAVVLSVSDGKLTTEGEN 189
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI00166F5ED3 (hypothetical protein n=1 Tax=Marinobacterium nitratireducens TaxID=518897 RepID=UPI00166F5ED3)

HSP 1 Score: 94.0 bits (232), Expect = 9.400e-20
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 3 
Query:  165 AAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
            A+ DG    YV V DEP H  +F ND V +Y   F PGE+SL+HRH E+TLY+ V  A          E  VH    G       K  P +H+V +  + T        E+ + P ++A+  L+   + L    S     R+Y  KLEPGE+TG   + F G+ + +SD
Sbjct:   19 ASSDG----YVGVADEPQHYHRFENDFVRVYDVRFAPGESSLYHRHDEDTLYVTVRDATIHDQTYQSDECQVHRIPAGLSLCRPHKGEPLIHRVRN--DGTGPMQMIGAEVKKLPEIVAAEPLQAPFHTLLENLSGARRLRLYMIKLEPGETTGPVTYGFSGLTVSISD 181
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI00037123EA (hypothetical protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI00037123EA)

HSP 1 Score: 90.5 bits (223), Expect = 1.830e-18
Identity = 55/161 (34.16%), Postives = 80/161 (49.69%), Query Frame = 3 
Query:  192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSA-PYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
            YV+V DEP H  +F ND   +Y   F+PGE SL+HRHS +TLY+ V +     ++    +  V H  P  L         P +H+V +  E          E  R PPV+A R LE   +    +  +    R Y   L+PGESTG+ ++ F G+++  SD
Sbjct:   23 YVDVKDEPRHVPRFENDYARVYDVRFKPGEHSLYHRHSVDTLYVAV-YDTRVFDQTYGADHGVTHELPAGLCGCRPHGREPLIHRVRN--EGAGLMQMIGAEHKRSPPVVAERPLEAPLHTPVADPFKGESIRCYQIDLQPGESTGLVEYPFSGLLVSFSD 180
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: UPI0015902AFA (hypothetical protein n=1 Tax=Martelella sp. HB161492 TaxID=2720726 RepID=UPI0015902AFA)

HSP 1 Score: 88.2 bits (217), Expect = 1.510e-17
Identity = 54/165 (32.73%), Postives = 80/165 (48.48%), Query Frame = 3 
Query:  192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAA-----ALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
            +VEV DEP H  +F ND V +Y   F PGETSL+HRH+ +T+Y+ V  A         +  T K    HH + G          P +H+V +  +     H    E+L+ P +++ + L   C+      S     R Y   LEPGE+TG   + F G+ + +SD
Sbjct:   26 FVEVFDEPRHYHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDASTGK---THHLTAGLSMCRPHGGDPLIHKVRN--DGDGLMHMIGAEVLKLPELVSDKPLSAPCHTQLDNLSGAERLRFYRIALEPGETTGEITYGFSGLTVSISD 185
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A506UAT6_9HYPH (Uncharacterized protein n=1 Tax=Martelella alba TaxID=2590451 RepID=A0A506UAT6_9HYPH)

HSP 1 Score: 86.3 bits (212), Expect = 7.940e-17
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 3 
Query:  192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFV--HHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSD 671
            +VEV +EP H  +F ND V +Y   F PGETSL+HRH+ +T+Y+ V  A    +     E     HH + G        S P +H+V +  +     H    E+L+ P +++ + L   C+      S     R Y   L+PGE+TG   + F G+ + +SD
Sbjct:   26 FVEVLNEPRHFHRFQNDYVRVYDVRFGPGETSLYHRHNIDTMYVTVNDAEVYDHTFQSDETTAKTHHLTAGLSMCRPHGSDPLIHKVRN--DGDGLMHMIGAEVLKLPDLVSEKPLSAPCHTQLDNLSGAERLRFYRIALQPGETTGEITYGFSGLTVSISD 185
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A2E4UR35_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E4UR35_9GAMM)

HSP 1 Score: 84.7 bits (208), Expect = 1.770e-16
Identity = 54/173 (31.21%), Postives = 88/173 (50.87%), Query Frame = 3 
Query:  192 YVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPT--DKEPFVHHASPGDLWWAMSKSAPYVHQVCSLPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVLCLSDGGGCLEGDRGD 704
            YV V +EP HR +F N    +Y      G+ +L+HRH+E+TLY+ +  AAA+L   T  +++        G       ++ P +H+VC++ +         +E+   PP  A+  L     ++R E+ R    R YD KLE G+STG+  + F GV + L+    CL+   G+
Sbjct:    9 YVPVRNEPRHRHRFENQWARVYDVLIPVGDATLYHRHTEDTLYVAI--AAASLRDQTWGEEDARTAEVEAGICICRPHRTRPLIHRVCNVGKGD--MRMIGVEVKDSPPETAANPLAADHVSMRWENER---LRAYDVKLEAGDSTGVLDFSFSGVAIMLTP--ACLKIGEGE 172
[Close]
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Match: A0A7S4KS54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KS54_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 1.080e-15
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 3 
Query:  174 DGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRHSENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLW-----WAMSKSAPYVHQVCSLPENTHTSHFFAMEIL-----RPPPVLASRLLEHRCYNLRREDSRPGLARVYDFKLEPGESTGIHKWEFCGVVL 659
            D  +  +VEV DEP H+  F N+   ++ A   PG+TSL+HRHSENTLY+ +  A A      + E   H A  G+++         +  P +H VC+L      ++F  +E+      + PPVL     E R Y +RRED       V++ K+E G+    H     G+V+
Sbjct:   23 DQTIEHFVEVKDEPYHQEFFENEYTRVFYAKIPPGQTSLFHRHSENTLYIVLDDAKACDRIAGEHEINFHDAIRGEMFARTHVHPSGEHTPLIHAVCNL--GGEATNFLGIEVKTQQASQTPPVLE----ESRGY-MRREDLVSPSFSVFELKVEGGKELPEHPLPNRGLVV 187
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FZY6_ECTSI1.820e-11685.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD60_9STRA1.920e-4844.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8W9_9STRA3.120e-4845.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHZ6_9STRA3.570e-3441.32Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00166F5ED39.400e-2034.91hypothetical protein n=1 Tax=Marinobacterium nitra... [more]
UPI00037123EA1.830e-1834.16hypothetical protein n=1 Tax=Marinobacterium rhizo... [more]
UPI0015902AFA1.510e-1732.73hypothetical protein n=1 Tax=Martelella sp. HB1614... [more]
A0A506UAT6_9HYPH7.940e-1732.10Uncharacterized protein n=1 Tax=Martelella alba Ta... [more]
A0A2E4UR35_9GAMM1.770e-1631.21Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A7S4KS54_9EUKA1.080e-1532.56Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1333795..1341696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size710
Cds size558
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.489.1prot_C-linearis_contig10.489.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 1333795..1341544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927333.9668498-CDS-C-linearis_contig10:1333794..13341361622927333.9668498-CDS-C-linearis_contig10:1333794..1334136Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1333795..1334136 -
1690879632.525489-CDS-C-linearis_contig10:1333794..13341361690879632.525489-CDS-C-linearis_contig10:1333794..1334136Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1333795..1334136 -
1622927333.9761827-CDS-C-linearis_contig10:1340986..13410831622927333.9761827-CDS-C-linearis_contig10:1340986..1341083Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1340987..1341083 -
1690879632.5344296-CDS-C-linearis_contig10:1340986..13410831690879632.5344296-CDS-C-linearis_contig10:1340986..1341083Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1340987..1341083 -
1622927333.9860265-CDS-C-linearis_contig10:1341425..13415441622927333.9860265-CDS-C-linearis_contig10:1341425..1341544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1341426..1341544 -
1690879632.5446043-CDS-C-linearis_contig10:1341425..13415441690879632.5446043-CDS-C-linearis_contig10:1341425..1341544Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 1341426..1341544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927333.996541-UTR-C-linearis_contig10:1341544..13416961622927333.996541-UTR-C-linearis_contig10:1341544..1341696Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1341545..1341696 -
1690879632.5548198-UTR-C-linearis_contig10:1341544..13416961690879632.5548198-UTR-C-linearis_contig10:1341544..1341696Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 1341545..1341696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.489.1

>prot_C-linearis_contig10.489.1 ID=prot_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=186bp
MPNIAAFDGKLVEYVEVHDEPIHRRQFSNDNVYIYIAGFRPGETSLWHRH
SENTLYMCVGHAAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQVCS
LPENTHTSHFFAMEILRPPPVLASRLLEHRCYNLRREDSRPGLARVYDFK
LEPGESTGIHKWEFCGVVLCLSDGGGCLEGDRGDGG
back to top

mRNA from alignment at C-linearis_contig10:1333795..1341696-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.489.1 ID=mRNA_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7902bp|location=Sequence derived from alignment at C-linearis_contig10:1333795..1341696- (Chordaria linearis ClinC8C monoicous)
CACAAACCAAGGTGCAAGCGATTTTGTCTGCATGTACCTATTGTCAATTG
TCATTACAACCAACGACCTTGCTGTAATAGGCTGTTGGCGGTGGAGGCGT
GCTTGGAATACAGAAAGAGATAGAAGGAGTGAGGGAGAGAGAAGAAGAAG
GCATGCCGAATATCGCTGCGTTCGACGGCAAGCTTGTCGAGTACGTGGAG
GTGCACGACGAGCCAATCCACAGGCGGCAGTTCAGCAACGACAATGTCTA
CATCTACATCGCCGGGTTCAGGCAAGTGCGATGCCTTCCTGCCTGCCTCC
TTGCTACAGTCCAACCCGTTAAAAATCAGCAGGCGGAACTTTTCAAAACA
GGTTGCGATTTGTTCCTACTTCAACGTGCCCGTTGAATCAATGCCACTCT
ACATGTAGCCTATATTTCTAATTTCTAACCCTACCCCAACCCCACATTCC
CGGTTTTGATACTTTATCCAAGTGGTTTGGTTAAGGACGAAACCTGCGTA
GGCTACTGTTTCTATATTTGCGGTTGCTTGCACGCTCTACCAGCCGAGGT
CACGATGTGTGATCCCCATCTGACAGGAGGATGCGCGCTCTCTGCTGCTG
CTCGCCTCGACAGACCCGGCGAAACGTCGCTCTGGCACCGACACTCCGAG
AACACCCTGTACATGTGCGTCGGGCACGCCGCGGCCGCTCTAAACCGGCC
CACTGACAAGGTGAGAGGCCTGGTTCTCCACTCTCCGATGGACAGCATCA
TTTTCCTTGTCAGTCATCTGTGTATGCAATGCGGAGTAGGACAAGCACAT
CAAAGCCCACGCCCTATTGGTACCGCACGTCGATGTGCTTGCTCCTCGCA
GAGCTGAGGGGGTTCTGTATCAGCGCTATCGCCCCCTGGTTGTCCTCACG
GACCTGGATGCTAGCCCCATTCGTCTCGGGCGCTACAAACGACAGAACCG
CTCGCGCAAACAGCGCCTCCTTGGCGCCCTCCCCGGCTGCGATATACTCA
GCCTCTGCGGTCGACAGAGCCACTACACGTTGCGTCTTGCTAGTGTGGCT
TACCACGGCACCCCCTAGGGTCACGGCTATCCCCGACATCGAACGCCTAT
CGGTATCCTCATCGGCGTAGCTCGCATCAACGTACATCGCTAGGTCTAGC
CCCGAACCCCGCACGTAGGTGATGCCGAGGTCCCTCGTGCCGTTCAGGTA
GGACAGGATCTGCACGATTGCCTCCCAAACCTCTTCGGTTGGGGCGTTGG
CGTGCCTCTGCACCTTGTTCAGGGCGTGGGAGATGTCTGGCCTTGTATAA
GCCGCCGACCACGTCAGGCACTCGATCGCCTTCCTCACAGGCTTGTCCAC
CCTGGGCTGATCGTCTCTCTTCGGCCCTAGGGTAACACCGGGGGTAGCGG
GGAGGTGGGCGGTTTTCGTGATGTTGAATCGGTCCACCATTCCCGCAATG
TACGCCTTCTGAGGCAAAGTAGTTGTTCCCAACTCTGCATCCCTATCAAT
CGCACACCCATCGTACCACGTGCAATATCCCAAGTCCTTGACTGGAAACT
TCGTTTGGAGGGAAGCAAGCAACTCCTTGCGCTCTTTCTCAGACCCCCCA
AACATGATATCGTCCACGTAGATGACGATAATACTGATCAGCTCCCCGTC
TACCATCTTACGGAAAACACACGGATCAGCCGTGTATTGCTCGAACCCGT
TCTCGATCAGGGTATCAGCAGCCTCATGCCCCCACTCACGACCGCTCTGC
TTCAGACCGTATATGGCACGTTCAACCTTGTAGACCTTGCCAATCTTGCT
ACCGCAACCAGGGGGAAACCTCAGATAAAGTTCCTCTTTGATGGTAGCGT
GCATGTATACTTGCTTGACATCCCAGTGGTACACGGGCATTCCCTTCTCA
TTGGCTACAGCCAAACACAGTCTGAATGGATGCTGTAGACGGGCATGCTG
AGGATGAGTGGTGGTAGTCTACACCGTGGATTTGGGAGAATCCACGCGCA
ACCAGACGAGCCTTAAAGTCAGCGATCACACCCAACTCGTTGATTTTCCA
TGCGAACACCCATCTCGAACTGACTGGCTTCCGCCCTTCCGGTACTGAGT
CTATCGCCGAAAAAGTCTCTGTTTTATCGTGTCCGTCCAACTCTTTCTTG
ATGGCCTCTTCCCACCACGTTCTGTACTTAGACCAATTCACATCTTCGTA
CGACATCGGGAGAGCCTCTACACCGTTAGGTTTCTGCCCGATTGGCGAGT
GGGTACTTAGCTCTGGCGTGTAGAGCGGTAGCTTGGAGGTATCGATGACG
TTCCGGCGTTCCTCTTCGTCGATTGCTGCATGAAACGCCATCTCCGCCTC
ACGAAACACCTGCTGCATAAACGCCTGCTCCTCCTGCAGACGGTCCTCCA
CGAGCGAGTTGCAGATGTACTCCTCGACCTTCTTCGCGCCGTGCTCCTCC
TCCATGACTGCAGCAAGAAAATCCTCCTCGGCGCAATTCGCCAACTCCCG
GGACTCTCGGGTCTCTTTCCGGGTGCGGCCAGGCTGTAGGTCGTGACGCA
TCGGTCCATCCGCCGAGGCGGTCCAGTGGAGCTTGCTCCCCTCTCGTCCT
TGAGGGTAGCGGCTGTCGGCGGGATCGTAATCGTCGCCACCGGGGCTGTC
GGCGCCGCCGTCCGAGCCACTGCCGCCGCCGCCGCCGCCGCCGCCGCTGC
TACTGCTGCTGCTGCTGCTGCTGCTGCTGGCGTGGCCGCGGGAATCGTCG
CCACTACCGGGGTCGCCACCTCCCGAGAGGGGCGACGGGGGGATGCTACC
TTCACCCCCCGGGTCGCCGAAATCGCCTCCTCCCGAGAGGGGCGACGGGG
AGACGTTACCTTCGTCCCCCGGGTGTCCGTTTCCGGGTACCGCCGGCGTC
TGACGGGTCGGCAGTGCCGCTTGCCCTGGCCCACGGACCTCCGTCACATC
GAGGTCGGATTCGCTCTTCAAGTCGTCCTCCCCCCCTCCACCTTGACTTG
ACGCGCCCTCCCTGCCCTCGCCCTCACCGTTTGCAGGCCCCTCCTCATCT
GCGGGGGGCATCGGCTGCGGGGTGGGCGGAGCGTCGGGCACGTGTCGCCA
AGTGAAATTGCGGGTTGTGATTACGTGTCCATTTTCGTTCAGCATACGGA
CGCAATCACGGAGGTGGTTGTGGGCCGGCCCAAGGTACCAGCCTTTTTGT
GCCTTGGGTTGCGACTTATTTCTCGTCTAACCTGGTACACCGCCGGCTTA
AGGAACGGGTACAATATGTTGACCCGAACGGGGGCGGTGTGCCGTGGAAC
ATCTCGTAGGGAGATTTGTCTCCAGCGTTTGCGGTAGTTGCTGTGCAGTT
CATTTGATGGCATGCTCACGAGATGGCTTCGGCCCACAAAGAACGAGAAG
TGGGCGCATCAGGAAACAGTTCCTTAGCTTGGACTCGCGCCGCAAGGGCG
GCCTCGGTGATCAACGCTAGCGCTCTCTCTGCAACACCGTTGTACTTTGG
GGTGTGGGGAGGTGTAAACTCTTGCTTGATGCCGTGCTTACGGCAAACCT
CGGCAAACGGCCCCTTGAACTCGCCGCCGTTGTCTGAGCGTGCGATATAA
ACTTCACACGGAGTGCCCTCAACGCGGTAATCCGCTAGGTACTTCTCGAA
TGCCCCGGCTGCGTCAGACTTGCGCTTCAGGAAGAATTCACGCGTCCAAC
GAGTGCAGTCGTCTTTGATTATGAGGGTGTACCAATTCCCCCCAATGCTG
GTGAACTGCATCCTCCCCCCCAAATCGAGGAAAATGCGCAACAGCTTCTT
AACTGCGCGGTTGTCCGTGATCTTCTTGATGGACTTCACCTGTCCCTTGG
ACATGGAGAAGCCTAGGCAGCGTTGGAGCGGCCCATTGGTCAGCTCCACT
CCCTGCTGCTTGGCCGTGATCCTGAGCAACCGCTCGTGAGTGTGGCCGTG
CGAGTTGTGGTAGTAATTGAGGTCAGTGGGGTGGCCGCTTTCGCTTGACC
AGGAACAACTACGGCGGCAAAGGCGATGTCTACCGTGGGCTCGGCTTGAT
AGCCCACTTGAGTGAGCAGTTTGCCGTTCCGGGGGAACCATACATCCCCC
CCGGCGGTCGTGGTCAGTGTGAGCCCCACTTTCTTCCCCACGTACGTGTG
ACCCTCTTCCGCCAACGCACTGATCGATATGAGGTTGTAGGGGACTTCCG
GCACATGCGCTGCGTTGAGTATCGACACAGGCACCCAACCATCGTCCGAC
TGAAGGACTACGGTTACGTCACCATATCCTAGAAGGGAAAGAGGAGCTTT
GTTTCCAGCAACCCCCTTCACCCAACCACCACTCTTTCGGTGGTTCACAA
AACCATCTGGGCTTGTGAACATGGAGGACTTGGCCGCTGTATCAGCCACG
TACTTCATGATATTCCTGGCCATGTTCCATACCCCCCACTAGACCAACGG
TACCACACTCGCCTGGTTGGTCCAACTCGGCCACGAACGCCTGATTCTCG
ACGGAGTCCACATCGCTCATCACCTCCGCAAGCACCGCCTCCTCCGTCGG
GCAGGCGTCCTTCTTGTGCCCAAAGCCTCCGCAGTGGTCGCACTGCGGAA
CGCGTTCGCTCTCTGGCGTGGTGCAGTCAAGGCCCTTGTGCCCCTTCTTC
CCGCACCTGTAGCAGCGAAAGATCCTCCCACTGCTGCCAGAGCCACCGAA
GCTGCTTCCACCGCCTCCGCTGTTCTCCGCCTTGCTGCCTTTTCCACCGC
CGCCGTTGCCGCCGCCGCGACCGCTGTTGCGGCCGCGACCACGACTACGG
CCTGACGACCGTGCGCCGCGGCCACCATCGGCGATGTAAGCCTGCTCGGA
GCCGCGTGACCCTTTACCTGCCCTCCTCTTCATCAGGTCAGTGTGCTGAG
AGCTGATTTCACGAACAACAACGGTACGAGTCATCTCCGACGGAGACATG
CCTCGCAGCTTGTGCTTCGAGAGTTGGTACTCGGCGTCGGGAAGGGCATC
CAAGAAGTGGAACAAGACGAAATGTTGGTTAACGCTAATTCCGATCTCGT
TCATGCGTTTTGCCAGGGTCAGCATGTTGTTAAGACCCTCGATGGGGTGT
TTGTTGGCGTGGATTTTGTACGACATGAGCTGGTCCATGTCGGCTTGGGA
GTGTACTTGGAGTCTGGGAAATAAATCGCCTTTAGCTCCTGGAATGCCCC
CTGGGGTGTGAGGGCCCTGTTCATGGTCCTCCTGTCACCCTCCTCCTTGA
GGGCGTGCCTCAAGAACCCCCAAGCATGGCACGCCATATCTACTCGATCG
CGTGGGTACTCGTTGTACAGGTCAGCTTTACTCCTTGTGTTGTCGTGTAC
GGGGATTTCGTATCCACCCTCTTTGAAGAATTCCATGAGGTCGACTGCTT
TGGCTTCGTGGATGAAGTCCTCATACCATCCGACGAAACTCGTTGTTTTG
CCGTCGAATGTGGGCGATTGGTATTTTACGTTTATCATGCGGTTTTGAAC
ACCACCACCAACAAACGCCCCGCCTTCAGCATCGTCTCCCATGCTGGATA
CACCATCACACCCCGTAGCAGCGGCTACTCTCACCCCTCGAGGGCTATGT
CCCCTAGCTTCGCCGCTGTTCTGTCCATCAACTGGACCAGATTCCGAACC
CGCGCCTGCTGCGGGACGAACGCAGGCCTCCTCCCGGCCTTCGCTCTGCG
GAGCCCCCTTGCAGGCTCCTCTTGCGGTGCTGTCGCCATCCGTCGCAACA
GCACGTTCAGTATCGCCCTGCTTGGCACTACCTGACTCCTCTCTACTCTC
GAACGCTTTCATGACCAGACCAGTCAACTCACTGATCTGGGTGGTCAACG
AGCAGACCTGCTCTCTCAACTCTATGACCTCGCGCTGTGACGAGGGAATC
CTCTCTCTCTCCACTAAATCGCTGCCTAGAAGACCGCCGCGGGCTCCGCC
CGCGTCTTTGCGGTCCTCCATTTCCGAATGGACTCCCTCGAGGGAAGAAC
ACTAGTGTATTCGTGTACAAGTATATCCTTTATTCCGGAGGTAGAAACTT
GTTTATCGCTTTGTTTAGAAACGTAGAGCACGAGAGAAGGAAATGAAGTG
CCAGCCTCCCGAATTCGGAGGGGGCTCCGCATACTGCATACAATCCCAAT
ACGTGTCATACGTCCCCATCTGTGTATACATCCGCTATTCGAGGTAGATC
TAACCGTTCGTATCCAAACACACGAACACCCTACGGCAAATCTTCACTGC
CCGGGGTCTGACCGCGGGCGCGGCGCCGGCGCCCTCGAACGATATATGAG
GTTGGCAAGGCACTGGAACATAACGTGTCTTCATTCCGCCCAATATTTTA
GAGTGATGGAGAATATTGTCATGTGATGAAGGAAGAGAGTCTACCCTTCT
TATAATGAGGAGCCCCGGCAAAGTAAAAAAAGACATCTACTCTAGTCGGG
CGGCGAAAAAAACGCAGGCTACTGTTAAGTGTCTGTCTGTGTGTGTGCGT
CTGAGTTTATCTGGGTATCGCTGCGTTTGAAACCGTGTTTTCGATACCTT
TTGCGCCCGTTTTGGCGCGGATCGAGACCGAGGGCTTGAAGGAAATATCT
AAATAGGACCGACCCATTGCCGCTCGCGCTTGTGCATGCGGAGACGAGCT
CGCGCCGTGATCGGCGAAAAGTCGTGTTTGAATTCGAGGTGTCATGAGCG
TGTGTGTTTGACCTATGTAGCGCGGCGGACTCAGCACGCACAAGGACAAC
CGAGGGCTTCCCGGAAAGCTGCTTGCAAGATCGATCGATTGATCCATGTG
TCATGTCACCCCGTCACCTCTTCGCCAGCTACGGTGGTATCATATCGTCG
AGGAGCCGCCCACGACAGCAACGAACGGCGGCGGCGCCGGCGGCAGCTAC
GTCATTATTCTAGCACACGTTTACTAGTCTTCGGTTATATTCGGAGCCCG
CGGACTCGGGGCAGCAAAAAGGGCTCCTCGTAACTGCATTCATTAAGCTG
CGTGCGGTTGCACGGCGAGGGCACAAACACTCCACGCTACGCCTGCTCTG
CAGATGAACCGTTCGTTTCTTTCGAGCACTACGTACAGTCTCTAATGTGA
ACGGACTCGTATGCGTAGGCTCTCACGAGTGCGCGCGTGTGCATCTGCGA
GCTCTTCGCTCTCCCTCTCCTGTGTCTCTCGCTCCCGCATCCGACTCACC
AGCAGCGCGTTCTCCGCGCAGGGGCAACCTACACCTCTGGTACTCTTTTG
CCCCGACAACGGCAGCCACATGTACATGCGGATAGGTCTGCCGTATGGTG
GTCATGATGGGTGTGTCGGGGCAAACCCAGTCGTGTTTTCGTCGAGTTCA
GAGAGGCGCGGGAGCAGCTGTCGTTTAGCAGAGGGATCGGTATTCACAGT
TTTTTCCGGCGGGAAGTAGGCATCCACTGGACTCTATTGCTGCACTTGGT
TCTCGCAAAACTCAACCCAAACGTCACGATTCCCACTCTGTCGAACCCTC
GGCATCTTGTGTCTTACCACTCCGGCCGTTGCGTCTCGATCGCGCGCCCC
CCTCCGCTAGGAACCTTTCGTGCACCACGCCTCCCCCGGAGACCTCTGGT
GGGCCATGAGCAAGAGCGCTCCGTACGTGCACCAGGTCTGCAGCCTGCCC
GAAAACACCCACACCTCCCACTTCTTCGCCATGGAGATTCTCAGACCGCC
GCCCGTTCTCGCCAGCAGACTGCTCGAGCACCGCTGCTACAATCTCCGCA
GGGAGGACAGCCGCCCGGGGCTGGCGCGCGTCTACGACTTTAAGCTTGAG
CCCGGGGAGTCCACGGGGATCCACAAGTGGGAGTTTTGCGGCGTCGTGCT
GTGCCTTTCCGACGGCGGGGGTTGCCTGGAGGGTGATAGAGGGGATGGGG
GC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig10:1333795..1341696-

>mRNA_C-linearis_contig10.489.1 ID=mRNA_C-linearis_contig10.489.1|Name=mRNA_C-linearis_contig10.489.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at C-linearis_contig10:1333795..1341696- (Chordaria linearis ClinC8C monoicous)
ATGCCGAATATCGCTGCGTTCGACGGCAAGCTTGTCGAGTACGTGGAGGT
GCACGACGAGCCAATCCACAGGCGGCAGTTCAGCAACGACAATGTCTACA
TCTACATCGCCGGGTTCAGATGCCGAATATCGCTGCGTTCGACGGCAAGC
TTGTCGAGTACGTGGAGGTGCACGACGAGCCAATCCACAGGCGGCAGTTC
AGCAACGACAATGTCTACATCTACATCGCCGGGTTCAGACCCGGCGAAAC
GTCGCTCTGGCACCGACACTCCGAGAACACCCTGTACATGTGCGTCGGGC
ACGCCGCGGCCGCTCTAAACCGGCCCACTGACAAGACCCGGCGAAACGTC
GCTCTGGCACCGACACTCCGAGAACACCCTGTACATGTGCGTCGGGCACG
CCGCGGCCGCTCTAAACCGGCCCACTGACAAGGAACCTTTCGTGCACCAC
GCCTCCCCCGGAGACCTCTGGTGGGCCATGAGCAAGAGCGCTCCGTACGT
GCACCAGGTCTGCAGCCTGCCCGAAAACACCCACACCTCCCACTTCTTCG
CCATGGAGATTCTCAGACCGCCGCCCGTTCTCGCCAGCAGACTGCTCGAG
CACCGCTGCTACAATCTCCGCAGGGAGGACAGCCGCCCGGGGCTGGCGCG
CGTCTACGACTTTAAGCTTGAGCCCGGGGAGTCCACGGGGATCCACAAGT
GGGAGTTTTGCGGCGTCGTGCTGTGCCTTTCCGACGGCGGGGGTTGCCTG
GAGGGTGATAGAGGGGATGGGGGCGAACCTTTCGTGCACCACGCCTCCCC
CGGAGACCTCTGGTGGGCCATGAGCAAGAGCGCTCCGTACGTGCACCAGG
TCTGCAGCCTGCCCGAAAACACCCACACCTCCCACTTCTTCGCCATGGAG
ATTCTCAGACCGCCGCCCGTTCTCGCCAGCAGACTGCTCGAGCACCGCTG
CTACAATCTCCGCAGGGAGGACAGCCGCCCGGGGCTGGCGCGCGTCTACG
ACTTTAAGCTTGAGCCCGGGGAGTCCACGGGGATCCACAAGTGGGAGTTT
TGCGGCGTCGTGCTGTGCCTTTCCGACGGCGGGGGTTGCCTGGAGGGTGA
TAGAGGGGATGGGGGC
back to top