prot_C-linearis_contig10.484.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.484.1
Unique Nameprot_C-linearis_contig10.484.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length467
Homology
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 501 bits (1291), Expect = 1.900e-167
Identity = 322/485 (66.39%), Postives = 353/485 (72.78%), Query Frame = 0
Query:    1 MVKKLPACYGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYANQAEAEGGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEIYDPSTGVANAPPNAXXXXXXXXXXXXXXXXXXXXXXPPTLPGIVPTLPGIGGAA------------PASSPPGTTLTXXXXXXXXXXXXXXXXXXXSSSSPVPRSIDEAREVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLPGGAAAREAWAEPATAR-------RFMVHLASWRKAEDEAGAAAAVLYEGAWWKRLNASCFLVSRCPRPPPSPPGTAEADKRRAGTGADKRGLSPASNALRILGQVLNEIDLAGGGKVGVVTNEPALAELLS 466
            MVKKLPACYGIRKGRGAPVVVHSW+EVVAKTNGFPGADFRKFKTPEEA++YAN  + EGG LNPAP GW+++WFDGGCRGNPGPSGAGAVIFND EKELYSGYKYLGEGKTNNEAEYESVILGL+AAAKL   Q+VVKGDSMLVIQQMMGKWRVSAPKLVGLH+QASEVV+ ++LKCTWHHV RK NVRADLLANIAMDSKSMDEIYDPSTGV N  PNA XXXXXXXXXXXXXXXXXXXXX      IVPTLPGIGG+A            P + PP  +L X                  +S S VPRSI+EARE   XXXXXXXXXXXXX                GL++P G AAR  WA  AT         RF+VHLASWRK E + GA AA++ E   +KRL A           PP  P  AEA+KRRA     +RGLS A   LR+L QVL+EI+  GGG V VVTNEPAL +LLS
Sbjct:    1 MVKKLPACYGIRKGRGAPVVVHSWAEVVAKTNGFPGADFRKFKTPEEATDYANLVD-EGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXIVPTLPGIGGSAGTTVASTSAAPAPVTLPP-PSLKXPSILPGATDAYPPPPASAASVSAVPRSIEEAREXXXXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLTESSPPRFLVHLASWRKTETDLGAVAAIVQEERMFKRLTA-----------PPGVPA-AEAEKRRAAAADQRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLS 471          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.810e-147
Identity = 298/479 (62.21%), Postives = 333/479 (69.52%), Query Frame = 0
Query:   25 SEVVAKTNGFPGADFRKFKTPEEASNYANQAEAEGGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEIYDPSTGVANAPPNAXXXXXXXXXXXXXXXXXXXXXXPPTLPGIVPT----------LPGIGGAA------------PASSPPGTTLTXXXXXXXXXXXXXXXXXXXSSSSPVPRSIDEAREVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLRLPGGAAAREAWAEPATAR-------RFMVHLASWRKAEDEAGAAAAVLYEGAWWKRLNASCFLVSRCP---RPPPSPPGT--AEADKRRAGTGA--DKRGLSPASNALRILGQVLNEIDLAGGGKVGVVTNEPALAELLSV 467
            S +V  TNGFPGADFRKFKTPEEA++YAN  + EGG LNPAP GW+++WFDGGCRGNPGPSGAGAVIFND EKELYSGYKYLGEGKTNNEAEYESVILGL+AAAKL   Q+VVKGDSMLVIQQMMGKWRVSAPKLVGLH+QASEVV+ ++LKCTWHHV RK NVRADLLANIAMDSKSMDEIYDPSTGV N  PNA  XXXXXXXXXXXXXXXXXXXXP                   LPGIGG+A            P + PP  +L                    +S+S VPRSI+EAREVAAXXXXXXXXXXXXX                GL++P G AAR  WA  AT         RF+VHLASWRK E + GA AA++ E   +KRL      V+RC    +P  +PPG   AEA+KRRA   A   +RGLS A   LR+L QVL+EI+  GGG V VVTNEPAL +LLSV
Sbjct:    2 SYLVRLTNGFPGADFRKFKTPEEATDYANLVD-EGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKELYSGYKYLGEGKTNNEAEYESVILGLKAAAKLSITQLVVKGDSMLVIQQMMGKWRVSAPKLVGLHRQASEVVKQHQLKCTWHHVPRKLNVRADLLANIAMDSKSMDEIYDPSTGVVNTAPNAAAXXXXXXXXXXXXXXXXXXXXPAAXXXXXXXXXXXXXXXXXLPGIGGSAGTTVASTSAAPAPVTLPP-ASLKPPSILPGATDAYPPPPVSAASASAVPRSIEEAREVAAXXXXXXXXXXXXXDARASIAAGGGVTSTSGLKVPDGQAARAMWASLATGSLAESSPPRFLVHLASWRKTETDLGAVAAIVQEEGMFKRLT-PVLRVTRCATPAQPAQAPPGVPAAEAEKRRAVAAAADHRRGLSAAGTGLRVLAQVLDEIEQIGGGNVAVVTNEPALVDLLSV 477          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6U1LVX6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1LVX6_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.480e-35
Identity = 97/235 (41.28%), Postives = 124/235 (52.77%), Query Frame = 0
Query:    9 YGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYA-----------------------NQAEA----EGGALNP--------APEGWAS----MWFDGGCRGNPGPSGAGAVIFNDK--EKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKS 202
            Y I  GR  P +V +W E   +  GF GA F+ F    EA  +                        N A+A     GGA +P        APE  A     M+FDG  RGNPG  GAGAVI+     E +L+ GY+YLGE  TNNEAEY + +LGL+AAA  G + + V GDSMLVI Q  GKW+V+A  L+ LH+ A +++R      +  HV R+ N  AD LAN A+DSKS
Sbjct:    7 YAIANGRNGPKIVRTWKECSQEVQGFSGAVFKGFSEQAEAETFLLMYGVSADLQESPGEENKSSQRPNLAKAWVEQHGGARDPLEDEMEEKAPEKPAQDRPVMFFDGASRGNPGEGGAGAVIYTSDSFENQLWRGYRYLGEC-TNNEAEYTAFLLGLQAAADAGIQNLKVCGDSMLVINQATGKWKVNAENLMPLHENAKKLIRTMP-GLSLRHVPREENTVADGLANQALDSKS 239          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.450e-26
Identity = 68/153 (44.44%), Postives = 96/153 (62.75%), Query Frame = 0
Query:   60 GALNPAP-EGWA-------SMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWH--HVQRKHNVRADLLANIAMDSKS 202
            G  NP P EG+        ++ FDGG RGNPG SGAG VI+NDK +E+++G   L +  TNNEAEY +++ GL+ A +LG + + V+GDS L++ Q+ G+++V +  L   H+ A E   L     T+   H+ R+ N RAD LANIAMDS S
Sbjct:   19 GGPNPEPKEGFTIDPNQTYNLQFDGGSRGNPGLSGAGMVIYNDKSQEVWNGSYLLPKEATNNEAEYTALVKGLQHARRLGIRHLAVQGDSNLIVMQITGRYKVKSQHLKPFHRDAVE---LRSAFSTFEISHIPREENGRADELANIAMDSAS 168          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A7S2KCF7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KCF7_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.080e-26
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 0
Query:   62 LNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVR-LNELKCTWHHVQRKHNVRADLLANIAMDSKSMD 204
            LN +P     + FDGG RGNPG +GAG V++++   E++ G  YLGE  TNNEAEY  ++ GL+ A  +G   +VV+GDS L+++Q+ GK++  + KL+        +++  N  +    H+ R+ N RAD LAN AMD +  D
Sbjct:    3 LNVSPYRTYVLQFDGGSRGNPGTAGAGMVLYDEVGHEVWHGRHYLGEHSTNNEAEYTGLLAGLKCARAIGVSNIVVQGDSELIVKQLQGKYKCKSSKLIPYFTSVKSLIKGFNSFEV--RHIPREQNFRADELANEAMDWREND 144          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6C0CSI6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CSI6_9ZZZZ)

HSP 1 Score: 112 bits (280), Expect = 1.010e-25
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 0
Query:   71 SMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRL-NELKC-TWHHVQRKHNVRADLLANIAMD 199
            ++ FDGG RGNPG +GAG VI+ D  +E+YSG   LG   TNN AEY+ + LGL  A K G + +++KGDS+LV+ Q+  KW+V   K + L +Q + V +L N+L+  T  HV+RK+N RAD LAN+AMD
Sbjct:   27 TLMFDGGSRGNPGTAGAGFVIYKDM-REIYSGCAPLGHA-TNNYAEYKGLELGLTCAIKKGIESLIIKGDSLLVLNQITNKWKV---KSISLKEQYTNVKKLLNQLRSYTVEHVKRKYNKRADELANMAMD 152          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A6C0HQK6_9ZZZZ (RNase H type-1 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQK6_9ZZZZ)

HSP 1 Score: 111 bits (277), Expect = 2.380e-25
Identity = 59/124 (47.58%), Postives = 88/124 (70.97%), Query Frame = 0
Query:   72 MWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLAN 195
            ++FDG C+GNPGP GAGAVI+N+   EL++   ++G+  TNN AEY  +I+GL+ +AKLG K + V GDS LVI+QM G ++V++  LV L+K A ++ +  +   +++HV RK N RAD L+N
Sbjct:   26 LFFDGCCKGNPGPGGAGAVIYNNGI-ELWADCVFVGKKITNNIAEYTGLIIGLKQSAKLGIKNIAVNGDSQLVIKQMNGIYKVTSENLVELYKTAKQLEKSFD-SISYNHVYRKDNKRADELSN 147          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A061RJK7_9CHLO (Ribonuclease h n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJK7_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 7.630e-25
Identity = 83/235 (35.32%), Postives = 114/235 (48.51%), Query Frame = 0
Query:    9 YGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASNYANQAEAE-------------------------------------GGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSKSMDEI 206
            Y + +GR A  V  SW+E   +  GF GA F+ F     A N+  Q  A                                      G AL+ +      + FDGG R NPGP+GAGAVI+    + L+ G+ +LG   TNN AEY  ++ GLR AA LG K++ V+GDS LV++QM G++RV    L  LH+    VV   +   T+ HV R  N  AD LAN A+D++   E+
Sbjct:    7 YAVARGR-ASGVFSSWAECEKQVKGFKGALFKGFPNKHLAENFIMQNVASPCTPSRIGVSRTEHESPDRESQRPPKRHRKSEAPCEPGAALSSSVH---LLRFDGGSRRNPGPAGAGAVIWAPSGECLWRGWLWLGVA-TNNVAEYTGLLFGLRKAAALGLKRLAVEGDSDLVMKQMNGEYRVKNTALRSLHRDCKVVVGQMD-HVTFRHVYRSTNHEADSLANRAIDTRESSEV 235          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A7S2I3Y3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I3Y3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.000e-24
Identity = 60/131 (45.80%), Postives = 88/131 (67.18%), Query Frame = 0
Query:   74 FDGGCRGNPGPSGAGAVIFNDKE-KELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTW--HHVQRKHNVRADLLANIAMDSK 201
            FDGG RGNPG +G+G V+++ +E  E++SG KYLGE  TNN AEY  ++ G++ A  LGA+ +V +GDS+LV+ Q+ G+W+V   K  GL     EV++L     ++  +H+ R+ N RAD LAN AMD +
Sbjct:   76 FDGGSRGNPGVAGSGMVLYDAEEGAEVWSGQKYLGEDSTNNVAEYTGLLTGMKCAYALGARHIVAQGDSLLVVNQLNGEWKV---KNQGLKPIFQEVMKLRGQFESFQINHIPREENSRADRLANKAMDDR 203          
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Match: A0A535LZB1_9CHLR (Ribonuclease HI family protein n=3 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535LZB1_9CHLR)

HSP 1 Score: 108 bits (271), Expect = 3.120e-24
Identity = 58/127 (45.67%), Postives = 86/127 (67.72%), Query Frame = 0
Query:   75 DGGCRGNPGPSGAGAVIFNDKEKELYSGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMGKWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDSK 201
            DGG RGNPGP+  G VI +D+ ++L + +K+LG   TNN+AEY+++I GL+A        + V  DS LV++Q+ GKW+V  P+L GLH+QA+++++    K T  HV R+ N RAD L N+A+D K
Sbjct:   44 DGGARGNPGPAALGVVIEDDQGEKLRTFHKWLGVA-TNNQAEYQALIEGLKAMKDWEFDHLDVYMDSKLVVEQVNGKWKVKEPELQGLHRQATDLLKQFGDKVTVQHVAREENRRADKLVNMAIDEK 169          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4R0_9PHAE1.900e-16766.39RNase H type-1 domain-containing protein n=1 Tax=E... [more]
D7FZY9_ECTSI1.810e-14762.21Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6U1LVX6_9STRA1.480e-3541.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6T8JIG0_9STRA1.450e-2644.44Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S2KCF7_9STRA7.080e-2640.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6C0CSI6_9ZZZZ1.010e-2549.62RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A6C0HQK6_9ZZZZ2.380e-2547.58RNase H type-1 domain-containing protein n=1 Tax=v... [more]
A0A061RJK7_9CHLO7.630e-2535.32Ribonuclease h n=1 Tax=Tetraselmis sp. GSL018 TaxI... [more]
A0A7S2I3Y3_9STRA3.000e-2445.80Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A535LZB1_9CHLR3.120e-2445.67Ribonuclease HI family protein n=3 Tax=Chloroflexi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 71..211
e-value: 1.8E-37
score: 130.3
IPR011320Ribonuclease H1, N-terminalPFAMPF01693Cauli_VIcoord: 9..51
e-value: 9.1E-10
score: 38.7
IPR037056Ribonuclease H1, N-terminal domain superfamilyGENE3D3.40.970.10coord: 7..52
e-value: 3.3E-9
score: 38.7
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 74..196
e-value: 2.1E-23
score: 82.4
IPR002156Ribonuclease H domainPROSITEPS50879RNASE_Hcoord: 66..199
score: 12.916
NoneNo IPR availablePANTHERPTHR46387FAMILY NOT NAMEDcoord: 54..205
NoneNo IPR availablePANTHERPTHR46387:SF2POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEINcoord: 54..205
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 68..195
IPR009027Ribosomal protein L9/RNase H1, N-terminalSUPERFAMILY55658L9 N-domain-likecoord: 8..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1194706..1200188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.484.1mRNA_C-linearis_contig10.484.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 1194607..1200188 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.484.1 ID=prot_C-linearis_contig10.484.1|Name=mRNA_C-linearis_contig10.484.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=467bp
MVKKLPACYGIRKGRGAPVVVHSWSEVVAKTNGFPGADFRKFKTPEEASN
YANQAEAEGGALNPAPEGWASMWFDGGCRGNPGPSGAGAVIFNDKEKELY
SGYKYLGEGKTNNEAEYESVILGLRAAAKLGAKQVVVKGDSMLVIQQMMG
KWRVSAPKLVGLHKQASEVVRLNELKCTWHHVQRKHNVRADLLANIAMDS
KSMDEIYDPSTGVANAPPNAAAAAAAAAAAAAAAAAAAAASAPPTLPGIV
PTLPGIGGAAPASSPPGTTLTAASPKPSAIIGGAGGGDLLSSSSPVPRSI
DEAREVAAVAAATAAYAAVAADARAAIAAAGGLTGMSGLRLPGGAAAREA
WAEPATARRFMVHLASWRKAEDEAGAAAAVLYEGAWWKRLNASCFLVSRC
PRPPPSPPGTAEADKRRAGTGADKRGLSPASNALRILGQVLNEIDLAGGG
KVGVVTNEPALAELLSV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR011320RNase_H1_N
IPR037056RNase_H1_N_sf
IPR002156RNaseH_domain
IPR012337RNaseH-like_sf
IPR009027Ribosomal_L9/RNase_H1_N