prot_C-linearis_contig10.483.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.483.1
Unique Nameprot_C-linearis_contig10.483.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length299
Homology
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.160e-49
Identity = 110/236 (46.61%), Postives = 131/236 (55.51%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDELDPLLRESIETVGCFQEAQGDWKRATTTWSRLVEVEKRQLGPAQPY----------------------------------------------------DADGLNSLAETMLRLTPDDRDEAEKLLRLSLGTHEAKLGPEDLEVADTLYRLSACVRAAGRLE 184
            MHDAH +FAR+ L+DRG VRRP L RW +Y+SSLD LRS D+ VLKGLWLA+ER+G DGW   RPYE AL  + E D LLR + E VG FQEAQ D + A+ +W RL+EVEKR+LG   P+                                                    DAD L+S+A T L   P DR  AE LLR SL   EA LGPE L+VADTL +L    R AGRL+
Sbjct:  520 MHDAHTDFARECLLDRGHVRRPALKRWTRYLSSLDILRSTDRYVLKGLWLAIERLGGDGWGKTRPYEKALGMMLESDALLRTTAEAVGWFQEAQEDLEGASASWRRLLEVEKRELGADHPFVLNTYGNLAIWAERLGNIEEAAKWHEKEVEGLPLALARMNALVRSGLEADLDDADSLSSVAATALEFRPGDRALAETLLRRSLDVKEAILGPEHLQVADTLRQLGVSAREAGRLD 755          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.040e-44
Identity = 100/237 (42.19%), Postives = 130/237 (54.85%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQD-VLKGLWLAVERVGEDGWDICRPYEAALAEIDELDPLLRESIETVGCFQEAQGDWKRATTTWSRLVEVEKRQLGPAQPY----------------------------------------------------DADGLNSLAETMLRLTPDDRDEAEKLLRLSLGTHEAKLGPEDLEVADTLYRLSACVRAAGRLE 184
            MHDAH  FAR  ++DRG VR+P + RW   +SSLD LRS D   VLKGLWLAV R+G + W   RPY AAL+E+DE +PLL +S++++G FQ+AQGDW+ A+ T  R++ V++RQLG   P+                                                    DA+ LNS+A TML L PDDR  AE L+R SL   E KLG +D+ VA  L+ L   V  AGRL+
Sbjct:  519 MHDAHSGFARDCVMDRGYVRKPAVKRWTLRLSSLDVLRSFDDPFVLKGLWLAVGRLGGESWRNVRPYAAALSEMDESNPLLLKSLQSLGWFQDAQGDWQSASDTCRRILAVKRRQLGADHPHTILTLRALVYCAERLGNAEEMTEWQAELRRVLPLAVVRMQLRLDAGEVDGVDDANALNSIASTMLNLAPDDRGNAEALMRHSLEIQEVKLGRDDVYVAYNLHHLGVSVHLAGRLD 755          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.980e-34
Identity = 74/131 (56.49%), Postives = 89/131 (67.94%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDELD-PLLRESIETVGCFQEAQGDWKRATTTWSRLVEVEKRQLGPAQPYDADGLNSLA 130
            MHDAH NFAR+ L+DRGDVRRP + R  + ISSL+ LRSI++  LK LW  V+RVG DGW   RPYE AL  +DE + PL RE+IE V  FQEAQ DW  A  TW RL+ VE+ QLG   PY  +  + LA
Sbjct:  543 MHDAHSNFARESLMDRGDVRRPAIKRLVRSISSLEALRSINRYTLKHLWAGVQRVGGDGWATTRPYEKALEALDESNSPLFRETIEAVAWFQEAQEDWTGANRTWRRLLAVEEVQLGADHPYVLNTYHCLA 673          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 5.510e-31
Identity = 67/131 (51.15%), Postives = 88/131 (67.18%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDELDPLLRESIETVGCFQEAQGDWKRATTTWSRLVEVEKRQLGPAQPYDADGLNSLAE 131
            +HDAH +FAR+ L+DRGDVRRP LVRW + ISSLDTLRS+    ++ LWL VE+VG DGW   RPYEAALA +++ DPLL  S+  V  FQ  + DW+ A  T  RL+++   ++GP   Y    + SL E
Sbjct:  549 LHDAHSDFAREKLMDRGDVRRPALVRWTRNISSLDTLRSVRWHDVRDLWLGVEQVGGDGWKSTRPYEAALAGMEDSDPLLPTSVVAVAKFQRHEEDWEEAIATCRRLLDMPVTKVGP---YSLSVIRSLHE 676          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 5.170e-29
Identity = 69/131 (52.67%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDEL-DPLLRESIETVGCFQEAQGDWKRATTTWSRLVEVEKRQLGPAQPYDADGLNSLA 130
            MHDAH  FAR+ L+D G VRRP + RW   IS L+ LRS D  VLKGLWLAVE VG DGW   R Y AAL  +D L   L R++I  +   QEA  DW+ A+TTW RL+E+EK+QLG    +      SLA
Sbjct:  376 MHDAHSIFARETLMDHGYVRRPAVKRWVSSISCLEVLRSSDPYVLKGLWLAVEGVGGDGWLKSRAYSAALVGMDRLHSALARQNIIALARLQEAHEDWEGASTTWRRLLEIEKKQLGADHYHVLKSYRSLA 506          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.090e-28
Identity = 61/110 (55.45%), Postives = 74/110 (67.27%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDELDPLLRESIETVGCFQEAQGDWKRATTTWSRLVEV 110
            MHD    FAR  L+DRGDVRR  L RW  YISSLDT+RS + D LK  WL VE+VG +GWD   P E ALAE+D+ +PLL+ESI  V    EA  DW++A+T W R + V
Sbjct:  439 MHDVQSEFARASLMDRGDVRRHALRRWVGYISSLDTVRSYNADYLKHQWLDVEKVGGEGWDETHPCETALAEMDDPEPLLQESIAAVAKAHEAHEDWEKASTIWHRSLGV 548          
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.940e-24
Identity = 80/222 (36.04%), Postives = 105/222 (47.30%), Query Frame = 0
Query:    1 MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWLAVERVGEDGWDICRPYEAALAEIDELDP----LLRESIETV---------------------GCFQEAQGDWKRATTTWSRL-----VEVEK--------RQLGPAQPYDADGLNSLAETMLRLTPDDRDEAEKLLRLSLGTHEAKLGPEDLEVADTLYRLSACVRAAGRLE 184
            +HDAH +FAR+ L+DRGDV RP LVRW + ISS+DTLR++    ++ LWL  E+VG DGW I RPYEAALA +++ DP    LL   +  V                     GC +EA+   +        L     V V K        R  G            LA    +L P    E E+LL   L   EA    +   VAD L+ L  C+R AGR++
Sbjct:  504 LHDAHSDFAREKLMDRGDVCRPALVRWTRNISSVDTLRAVRWHEVRDLWLGAEQVGGDGWKITRPYEAALAGLEDSDPHRPTLLDMPVTKVRPYSLSVIRSLHELGLGYKHAGCLEEAEEVLRGCLVIGGTLLGFTHVTVAKTLDLSGCVRAAGQFAQAXXXXXRCLATREAKLGPRGLVETEELLARRLEIVEASTALDHEHVADVLFDLGRCMRQAGRMD 725          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.483.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FZW8_ECTSI1.160e-4946.61NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KLK9_9PHAE4.040e-4442.19NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5KRK8_9PHAE1.980e-3456.49NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
D7FZY7_ECTSI5.510e-3151.15NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KYW3_9PHAE5.170e-2952.67NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5J759_9PHAE5.090e-2855.45NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KJ30_9PHAE2.940e-2436.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 66..214
e-value: 6.5E-20
score: 73.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 216..298
e-value: 6.5E-14
score: 53.5
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 75..197
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 163..293
NoneNo IPR availablePFAMPF13424TPR_12coord: 141..196
e-value: 2.4E-8
score: 34.2
NoneNo IPR availablePFAMPF13374TPR_10coord: 220..246
e-value: 0.0041
score: 17.0
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 93..209
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 93..209
NoneNo IPR availablePANTHERPTHR45783FAMILY NOT NAMEDcoord: 216..298
NoneNo IPR availablePANTHERPTHR45783:SF3KINESIN LIGHT CHAINcoord: 216..298

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:1188959..1190022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.483.1mRNA_C-linearis_contig10.483.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 1186917..1190142 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.483.1 ID=prot_C-linearis_contig10.483.1|Name=mRNA_C-linearis_contig10.483.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=299bp
MHDAHLNFARKHLVDRGDVRRPVLVRWAKYISSLDTLRSIDQDVLKGLWL
AVERVGEDGWDICRPYEAALAEIDELDPLLRESIETVGCFQEAQGDWKRA
TTTWSRLVEVEKRQLGPAQPYDADGLNSLAETMLRLTPDDRDEAEKLLRL
SLGTHEAKLGPEDLEVADTLYRLSACVRAAGRLEEAEQLLGRCLAIEEAK
LGRKDVRVACMRYLPGVLVQAAERLEEAEELSRRCLAIQEAKLGPDDVQV
AFTLCVREAGRLEEAKALLRRCLAIEETKVGPEDVQAVVTLYQLGVCV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf