prot_C-linearis_contig10.464.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.464.1
Unique Nameprot_C-linearis_contig10.464.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length370
Homology
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BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match: A0A6H5JBH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH3_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 8.000e-16
Identity = 52/156 (33.33%), Postives = 84/156 (53.85%), Query Frame = 0 
Query:   13 CLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNA-LRVPRLPVRAVTVSKWPKRVLPCPPNRERPLSHIRR------VLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPVNDLV 161
            CL+ALA+ +    D +G+W++ST T  L+ VCLD+ ++CR+       HV VT  T R LWL G +D      +    R+P   VR V++ ++P +VL   P  ERP + +        V +   +       WWP++++E+RFG  FN P++  +
Sbjct:    8 CLEALAVAIRNTSD-KGVWFASTRT--LKTVCLDIYLSCRNRATARACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQVLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGSRFNHPLDSSI 160
[Close]
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.440e-6
Identity = 57/187 (30.48%), Postives = 76/187 (40.64%), Query Frame = 0 
Query:    4 TTGPAGGIACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNALRVPRLPVRAVTVSK---------------------------------WPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLQEVRFGDEFNRPV 157
            T GP    +CL  L + LN   D +  WY  TSTKELQ+  L+LC+ACR   +  T+H+ V A T R L           KR    RVPRL  R  T +                                  WP+R+      +  PL           NRL  G  W P +L++V  G +FN+P+
Sbjct:  128 TLGPTRS-SCLKTLTVALNETCDGKS-WY--TSTKELQLASLELCMACR---HYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPL-----------NRLLDGVSW-PASLRKVCLGHDFNQPI 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBH3_9PHAE8.000e-1633.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE1.440e-630.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 119..271
e-value: 7.0E-6
score: 26.7
IPR008615FNIPPFAMPF05725FNIPcoord: 285..328
e-value: 4.1E-5
score: 23.7
coord: 329..369
e-value: 4.0E-7
score: 30.1
coord: 175..217
e-value: 9.7E-5
score: 22.5
coord: 219..261
e-value: 5.3E-5
score: 23.3
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 139..369
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 120..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:933113..934467 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.464.1mRNA_C-linearis_contig10.464.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 932300..934467 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.464.1 ID=prot_C-linearis_contig10.464.1|Name=mRNA_C-linearis_contig10.464.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=370bp
MVNTTGPAGGIACLDALAITLNAAVDQRGLWYSSTSTKELQMVCLDLCVA
CRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHNALRVPRLPVRAVT
VSKWPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLQEVRFG
DEFNRPVNDLVWPASLRQLSFGYLFNQPIAGVVWPASLQQLSFGHSFNQY
FAGVKWPASLQQLSFGNMFNQSIADVVWPASLRRLSFRRDFNHYLARVNW
PDSLQQLSFGQCFNKPIARVVWPASLQKLSFEENFNQPITGVEWPASLRQ
LSFGRMFNRPTAGVVWPCNLQQLSFGNCFDQPIVGATWPASLQKLKFGAR
FNQPILGVAWPSSLQKLSFE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP