mRNA_C-linearis_contig10.463.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.463.1
Unique NamemRNA_C-linearis_contig10.463.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Match: A0A6H5JBH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.790e-16
Identity = 53/160 (33.12%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:  832 AGGIACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHDA-LRVPRLPVRAVTVSKWPKRVLPCPPNRERPLSHIRR------VLRRGSNRLGWGPRWWPETLEEVRFGDEFNRPVNDLV 1290
            +G   CL+ALA+ +    ++G+W++ST T  L+ VCLD+ ++CR+       HV VT  T R LWL G +D      +    R+P   VR V++ ++P +VL   P  ERP + +        V +   +       WWP+++EE+RFG  FN P++  +
Sbjct:    3 SGQRRCLEALAVAIRNTSDKGVWFASTRT--LKTVCLDIYLSCRNRATARACHVEVTVDTPRRLWLRGEEDALSLNSNGPPSRIPPPAVRVVSLEEYPAQVLARAPKEERPTTTLDASGLPADVGQVALDEPKQSREWWPDSVEELRFGSRFNHPLDSSI 160
[Close]
BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.290e-6
Identity = 53/178 (29.78%), Postives = 71/178 (39.89%), Query Frame = 1 
Query:  844 ACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVACRSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHDALRVPRLPVRAVTVSK---------------------------------WPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLEEVRFGDEFNRPV 1278
            +CL  L + LN   +   WY  TSTKELQ+  L+LC+ACR   +  T+H+ V A T R L           KR    RVPRL  R  T +                                  WP+R+      +  PL           NRL  G  W P +L +V  G +FN+P+
Sbjct:  135 SCLKTLTVALNETCDGKSWY--TSTKELQLASLELCMACR---HYQTLHLTVDAHTPRRLLAAADAPSPHPKRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIEFRQSSPL-----------NRLLDGVSW-PASLRKVCLGHDFNQPI 295
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBH3_9PHAE1.790e-1633.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE4.290e-629.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:922112..925817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3463
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.463.1prot_C-linearis_contig10.463.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 923958..925007 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.278526-UTR-C-linearis_contig10:922111..9239571622927330.278526-UTR-C-linearis_contig10:922111..923957Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 922112..923957 -
1690879629.9616246-UTR-C-linearis_contig10:922111..9239571690879629.9616246-UTR-C-linearis_contig10:922111..923957Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 922112..923957 -
1622927330.3401163-UTR-C-linearis_contig10:925007..9258171622927330.3401163-UTR-C-linearis_contig10:925007..925817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 925008..925817 -
1690879629.9879425-UTR-C-linearis_contig10:925007..9258171690879629.9879425-UTR-C-linearis_contig10:925007..925817Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 925008..925817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927330.287398-CDS-C-linearis_contig10:923957..9247391622927330.287398-CDS-C-linearis_contig10:923957..924739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 923958..924739 -
1690879629.9719136-CDS-C-linearis_contig10:923957..9247391690879629.9719136-CDS-C-linearis_contig10:923957..924739Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 923958..924739 -
1622927330.3310215-CDS-C-linearis_contig10:924982..9250071622927330.3310215-CDS-C-linearis_contig10:924982..925007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 924983..925007 -
1690879629.9795978-CDS-C-linearis_contig10:924982..9250071690879629.9795978-CDS-C-linearis_contig10:924982..925007Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 924983..925007 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.463.1

>prot_C-linearis_contig10.463.1 ID=prot_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=269bp
MVQTTKRAGGIACLDALAITLNAAVERGLWYSSTSTKELQMVCLDLCVAC
RSSWNISTMHVVVTATTSRHLWLHGGQDDDGKKRHDALRVPRLPVRAVTV
SKWPKRVLPCPPNRERPLSHIRRVLRRGSNRLGWGPRWWPETLEEVRFGD
EFNRPVNDLVWPASLQQLSFGYLFNQPIAGVVWPASLQQLSFGHSFNQYF
TGVKWPASLQPLSFGRGFNQHIARVAWPASLQLLSFDNSFNQPVNDVMWL
TSLQTLSLRHRFNRPLQE*
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mRNA from alignment at C-linearis_contig10:922112..925817-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.463.1 ID=mRNA_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3706bp|location=Sequence derived from alignment at C-linearis_contig10:922112..925817- (Chordaria linearis ClinC8C monoicous)
CGACTCGTCCTTGGGTAGAAGTCGACGCTTGGCAAGACAGATCCAGGCAG
CTGAAAAAGGTATGTCACCGGGCTGTCGGCATTATTTCTACATGACGCAG
CGGGTTTGCATTGAAGATGTCTTGAGCGAGTTTGTTTGCCTCTGTAAATA
CGGAGAAAATTGAAGAGGAGGCAGGTCCCGCCCAAGCGCAATGCGGGTGC
TTGCAGTTAACGGGATGAAATCGTATGCGCAGATCAACAGAGTGCTTCAT
TTTCTCAAGAAGACATGCTTATTCAGTCGTCACATCTCGAAGGGTACGAG
TACCGAGTATCTGTCTCTGGTTCCAACTCCAGCGCCGTTGTTGCCAGATA
TACCGGCTGACACAACGAGCATGCTCTCGAGTTTTTGGTGTCATCATGAG
TGTTGCAGCTTATTGGTGCCGCACAACACGGCAGCCTTTTTAGCCGAATT
GGCGTTGCGTCCCCCCTGTTGTCGGCCACGGCTAGACTAATCTAGACTAG
ACTATACCGTATATTTCGAGTTGGATATATAACAGCGTCTTCCTCTCTCC
CCCCCTCTCAAGCGTCTGGCTTTGCGTGTATCTGTACACAAACCGCCCCA
CCAGGAACCTACTTGCAAACAGGGAGGCAGCCATCGCTTGAAACGTGCTG
TACGATTGCCAGCGAGGTTTCATCTCCGGAAGCTAGCGTTCTTGACTGCC
GCTCTCTTCCACATTACTACTTTGAGGAGGAGGAGCCAGTTGGGTCTCTG
GACTAGAATGCTTGTGGAGGCGGCTCAATTCCCCCCGTGAAGACACTGCA
CGGAGGAGAGATGGTGCAGACAACAAAACGTGCAGGTTGGTGGTCGGCTT
GATCGGATGTGGTTGGTAGCGTTAGACGCCGGTCCTACTTGCGCGCGGAG
CGAACAGCCTAAGGGCTTCTTTGCGGTGGCTTGGGCTGGGTTGAAGAAAA
AAACGGTGTACTGCTGGATATAAATGACTACTTCGAAGTATACCTTTCGG
CCGGCCTGTGAAATGATGTGCTGCTTCTGCCGCTGCTGCTGCCGTACTAT
GTTGTCGTTTACCCGACAACGTTGATAGGTGGGATCGCATGCCTCGACGC
CCTGGCCATCACCTTGAACGCTGCCGTCGAGCGGGGGCTGTGGTATTCTT
CGACTTCGACGAAGGAGCTGCAGATGGTATGCCTTGACCTGTGCGTGGCT
TGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGGTCACAGCCAC
AACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGACGACGGAAAGA
AGAGACATGACGCACTGAGGGTGCCGCGCTTGCCCGTACGCGCCGTGACG
GTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAAACAGGGAACG
CCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCAAATCGGCTTG
GGTGGGGCCCACGGTGGTGGCCCGAGACCCTGGAGGAAGTTAGATTCGGG
GACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGGCCTCACTGCA
GCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCCGGAGTTGTGT
GGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTTCAACCAGTAC
TTTACCGGCGTGAAGTGGCCGGCTTCGCTGCAGCCGCTGTCCTTTGGACG
TGGCTTCAACCAGCACATCGCCAGGGTTGCGTGGCCGGCCTCTCTGCAAC
TGCTCTCGTTTGATAACAGCTTCAATCAGCCGGTCAACGATGTGATGTGG
CTGACTTCTCTGCAGACACTATCGCTCAGGCATCGATTCAACCGCCCCCT
GCAGGAGTAGCGTGGCCGCCCTCCCTGCAGAGGCTATCGCTCGGGCATCG
GTTCAACCAACCCCTGACCGGAGTTGAGTGGCCGGCTTCACTGCGACAGC
TATTGCTGGGGGAGCATTTTAAGGAGCCCGTCGTCGGAGTTGTGTGGCCG
GCGTCTCTACAGGACCTATCGTTCGGAAGTGGGTTCAACCACCCTATTTC
CAGGGTTGAGTGGCCGGCTTCGCTGCGACAGCTACGTTTTGGCTGTTTTT
TCAACCAGCCCATCGCCGAAGTTGTGTGGCCGTCGTCTCTACAAGGATCT
ATCGTCTGGGCGATGCTTCAACCAGCCCATCGCCAGAGTCGTGAGGCCAG
CCTCCCTGCAACAGCTGTCGTTCGGGAATACGCTGTATCAATCCTTTGTG
GGGGTTGTGTGGCCGGCCTCTCTGCAGCAGTTGTCGCTCGGAAATGAGTT
CCAACAGCCCATCACTCGAGTTTCATGGCCAGCCTCGCTTCCGTGGCTGG
TTGTAAGGGGCCAGCGAAGGGGCATCCGACGGGAAACAGTGCGCCAGCCC
ATCGCTGAAGGAGTGGTATGGACGGCCTCCGCCCGACGACTGTCGTTCGG
GCCTTGTTTTAACGAGCCCGTGCTCGCGGTTGTCTAGCGCACGTCTTTGC
GAGAGCTGTCATTCGGGCGAGATTTCAACCAGCCCATCGCTGAAGTTGTG
TGGCCGCCGCCTCTACAACGGCTGACGTTCGGATTTGGGTTCAACCAGCC
CGTCCGTCGTGTGGCCGTCTTCCCTCCAAGATATTTATTTCGGGGCTCGC
TTCAACCAGTGTCTGTTCGGAGTTGGATGGCCGAGTTCCTTGCAGAGGTT
GTCGTTTGGGGGGTGCTTCGACCGGCCCCTCGCACGGGTTGAGTGGGCAG
CGTCGCTGCGGCGGCTTTCCTTTGGGAAAATGTTCAATCACCCTACCGCC
GGAGTCTTGTGGCCATGCTCTCTCGAGCAGCTGCCGTTCGGGATGCGCTT
TAACTAGCCCATCCTCGGGGTCACATGGCTGGCTTCCCGAGAGTTGAGGT
TTGGGTTATGCTTCAACCAGCCCATCGCCAAAGTGGTTTGGCCAGAGTCC
CTGCTGCAGCTGTCGTTTGGGGATTGGTTCAATCAGCCCATCACGTGGCC
GGGCGCTCTCCAGGATATGGCATTCGGGCAAAGTTTCAGCGCCCTCTTGT
CGGCGTTGTATGGCCGCGAGTCCTCGAGCGGCTGACGGTCGGGTGCGACT
TCAACGATCCAATCGCAGGAGTGTTGTGGCCGTGCGGTCTCGAGCAGCTC
TCCTTCGGGAGACACTTTTGATCAGTGCATCACTGGGGTTGTTTGGCCAG
CGTCGCTGCGGTTGTTGACGATCGGGGGTGAGGCACGCATTTGGCGCATC
ACGTAGGGCTGCCCGAGCGCCGACCATGAATAGTACCTGGCGGCCACACC
GGAGATCCGCTAAGAATATTGCGCGCCGGGCAGGAGCTGAATAAAGAGGC
TCGTGCTTTTAATTTGCTTAAAGGGCGAATACCGATTTCCCTAGGATAGT
TTTGGTTGATTGGACTGCAAACATAAGTGTATGACCGATGTTGATCTCTA
GAGGAGTGTTTTGGCGGGACGGGAGGCAGGCATCATCGGAACTGACTGCT
GCCGGCCGCTTCGCTGCCTGCCGTGGCATGAAAACTGGCATAGTAGTTGT
GCGCGTGAAGCGTGGATGGTGACGATGATTACATCAAAATACCGAAATGT
GCATATGGATGATGATGACGGTGATGGTTATGATGGTGATTGTATCAAAA
TACCGAAACATGGATTCGGATGACGATGATGGCGATGATGATGATATAAA
CCCCCG
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Coding sequence (CDS) from alignment at C-linearis_contig10:922112..925817-

>mRNA_C-linearis_contig10.463.1 ID=mRNA_C-linearis_contig10.463.1|Name=mRNA_C-linearis_contig10.463.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at C-linearis_contig10:922112..925817- (Chordaria linearis ClinC8C monoicous)
ATGGTGCAGACAACAAAACGTGCAGATGGTGCAGACAACAAAACGTGCAG
GTGGGATCGCATGCCTCGACGCCCTGGCCATCACCTTGAACGCTGCCGTC
GAGCGGGGGCTGTGGTATTCTTCGACTTCGACGAAGGAGCTGCAGATGGT
ATGCCTTGACCTGTGCGTGGCTTGTCGGTCCTCATGGAACATCTCGACCA
TGCACGTCGTGGTCACAGCCACAACATCTCGCCACCTGTGGCTCCATGGT
GGGCAAGATGACGACGGAAAGAAGAGACATGACGCACTGAGGGTGCCGCG
CTTGCCCGTACGCGCCGTGACGGTGTCGAAATGGCCAAAGCGTGTTCTAC
CGTGCCCTCCAAACAGGGAACGCCCATTGAGTCACATTCGGCGGGTGCTT
CGGCGTGGGTCAAATCGGCTTGGGTGGGGCCCACGGTGGTGGCCCGAGAC
CCTGGAGGAAGTTAGATTCGGGGACGAGTTCAACAGACCTGTCAACGATT
TGGTGTGGCCGGCCTCACTGCAGCAGCTGTCGTTCGGGTATCTGTTCAAC
CAGCCCATTGCCGGAGTTGTGTGGCCGGCCTCGCTGCAGCAGCTATCCTT
CGGACACAGCTTCAACCAGTACTTTACCGGCGTGAAGTGGCCGGCTTCGC
TGCAGCCGCTGTCCTTTGGACGTGGCTTCAACCAGCACATCGCCAGGGTT
GCGTGGCCGGCCTCTCTGCAACTGCTCTCGTTTGATAACAGCTTCAATCA
GCCGGTCAACGATGTGATGTGGCTGACTTCTCTGCAGACACTATCGCTCA
GGCATCGATTCAACCGCCCCCTGCAGGAGTAGGTGGGATCGCATGCCTCG
ACGCCCTGGCCATCACCTTGAACGCTGCCGTCGAGCGGGGGCTGTGGTAT
TCTTCGACTTCGACGAAGGAGCTGCAGATGGTATGCCTTGACCTGTGCGT
GGCTTGTCGGTCCTCATGGAACATCTCGACCATGCACGTCGTGGTCACAG
CCACAACATCTCGCCACCTGTGGCTCCATGGTGGGCAAGATGACGACGGA
AAGAAGAGACATGACGCACTGAGGGTGCCGCGCTTGCCCGTACGCGCCGT
GACGGTGTCGAAATGGCCAAAGCGTGTTCTACCGTGCCCTCCAAACAGGG
AACGCCCATTGAGTCACATTCGGCGGGTGCTTCGGCGTGGGTCAAATCGG
CTTGGGTGGGGCCCACGGTGGTGGCCCGAGACCCTGGAGGAAGTTAGATT
CGGGGACGAGTTCAACAGACCTGTCAACGATTTGGTGTGGCCGGCCTCAC
TGCAGCAGCTGTCGTTCGGGTATCTGTTCAACCAGCCCATTGCCGGAGTT
GTGTGGCCGGCCTCGCTGCAGCAGCTATCCTTCGGACACAGCTTCAACCA
GTACTTTACCGGCGTGAAGTGGCCGGCTTCGCTGCAGCCGCTGTCCTTTG
GACGTGGCTTCAACCAGCACATCGCCAGGGTTGCGTGGCCGGCCTCTCTG
CAACTGCTCTCGTTTGATAACAGCTTCAATCAGCCGGTCAACGATGTGAT
GTGGCTGACTTCTCTGCAGACACTATCGCTCAGGCATCGATTCAACCGCC
CCCTGCAGGAGTAG
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