prot_C-linearis_contig10.448.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig10.448.1
Unique Nameprot_C-linearis_contig10.448.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length44
Homology
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BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match: D7FH94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH94_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.230e-13
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0 
Query:    1 MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 43
            MGVRQRN+PPSPPL+SALPPKRPR+PG    DDP HGKRPR+G
Sbjct:    1 MGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 39
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BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match: A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.100e-11
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 0 
Query:    1 MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 43
            MGVRQRN+PPSPPL+SALPPKRPR+PG    DDP HGKRPR+G
Sbjct:  505 MGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 543
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH94_ECTSI2.230e-1379.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP54_9PHAE2.100e-1179.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:384809..385730 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.448.1mRNA_C-linearis_contig10.448.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig10 384334..387689 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig10.448.1 ID=prot_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=44bp
MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG*
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