mRNA_C-linearis_contig10.448.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.448.1
Unique NamemRNA_C-linearis_contig10.448.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match: A0A6H5JP54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP54_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.750e-11
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 2 
Query:  404 LAFHRMGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 547
            LAFHRMGVRQRN+PPSPPL+SALPPKRPR+PG    DDP HGKRPR+G
Sbjct:  500 LAFHRMGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 543
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BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Match: D7FH94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH94_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 5.680e-11
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2 
Query:  419 MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG 547
            MGVRQRN+PPSPPL+SALPPKRPR+PG    DDP HGKRPR+G
Sbjct:    1 MGVRQRNSPPSPPLVSALPPKRPRTPG----DDPGHGKRPRNG 39
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JP54_9PHAE1.750e-1181.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH94_ECTSI5.680e-1179.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:384334..387689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_004530.1
Exons3
Model size2509
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.448.1prot_C-linearis_contig10.448.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 384809..385730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927328.4991884-UTR-C-linearis_contig10:384333..3846721622927328.4991884-UTR-C-linearis_contig10:384333..384672Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 384334..384672 +
1690879629.1018515-UTR-C-linearis_contig10:384333..3846721690879629.1018515-UTR-C-linearis_contig10:384333..384672Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 384334..384672 +
1622927328.5131226-UTR-C-linearis_contig10:384729..3848081622927328.5131226-UTR-C-linearis_contig10:384729..384808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 384730..384808 +
1690879629.1128614-UTR-C-linearis_contig10:384729..3848081690879629.1128614-UTR-C-linearis_contig10:384729..384808Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 384730..384808 +
1622927328.5502725-UTR-C-linearis_contig10:385730..3876891622927328.5502725-UTR-C-linearis_contig10:385730..387689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 385731..387689 +
1690879629.141831-UTR-C-linearis_contig10:385730..3876891690879629.141831-UTR-C-linearis_contig10:385730..387689Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 385731..387689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927328.5271537-CDS-C-linearis_contig10:384808..3848231622927328.5271537-CDS-C-linearis_contig10:384808..384823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 384809..384823 +
1690879629.1247292-CDS-C-linearis_contig10:384808..3848231690879629.1247292-CDS-C-linearis_contig10:384808..384823Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 384809..384823 +
1622927328.5396132-CDS-C-linearis_contig10:385613..3857301622927328.5396132-CDS-C-linearis_contig10:385613..385730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 385614..385730 +
1690879629.1325414-CDS-C-linearis_contig10:385613..3857301690879629.1325414-CDS-C-linearis_contig10:385613..385730Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 385614..385730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.448.1

>prot_C-linearis_contig10.448.1 ID=prot_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=44bp
MGVRQRNAPPSPPLMSALPPKRPRSPGGDHDDDPSHGKRPRSG*
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mRNA from alignment at C-linearis_contig10:384334..387689+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.448.1 ID=mRNA_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3356bp|location=Sequence derived from alignment at C-linearis_contig10:384334..387689+ (Chordaria linearis ClinC8C monoicous)
GGAGGAGGAGGAGGACCCCAAGGCCTCGCCCGGGAGATGCAGAGACAGAG
ACAGAGGCAGAGCCGGAGCCGGGGTTGGCATCGGCAGCGAAGGCGCCGGC
ACGGAGGCGTATTCGGTTTCGTCGCGTTCTTGGTCGTCCCCGCGTCATCA
GGCGGCCGTGCCACACCTCCCCGTCGCCAAGCGGCAGCGGTGCCATCAGG
AAGGCGGTGGGAGCGGCAGCGGCGGCGGCGGCGGCGGTTGCGGCGGTGGC
AGCAGGAGAGAGAGGGAGTCGTGTCACCAGGTTGTGTTCCTGGACCAACA
GCGTCACCAGCAGCAGCAGCAGCACCAGCAGCAGCACCAGCAGCACCAGC
AGGAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGAGGCAGAGGGAA
CAGGAGGAGGAAGAGCAGGAGCAGGCGAGGAGGCAGGAGGAGCAGGAGCT
GCAGCTGCAGTTGGCCTTTCACCGGATGGGCGTGCGGCAGGTAAAGTACA
GGTCATGTGATGATTTTCTTGTGTTTTCATCTTTTTCTCTTGTCTTTCTG
ACCATGCATACGTACCTCTCTGGGTGCTTTTTGCGGTGGTGTACCTTTCT
ACGCGACCTCTGCGGCGTTAAGGTTCTCTCTGCACGCATGTCTTGTTGTT
GTTACGGCTTGCGCATGTGCGGTGTGTTGCGTGGCCTGTTTTTGTGGAGG
GGTGAGAAAGCCAAGAACGAAAACACACCCGGCGAGCATCCTGTCTGCCT
TGCCAAGAAGCGACAGCACGGATGTCTTGACCATGGCAGCTGGCCGAAGC
CGTGGGATGGGATGGGATGAGACCCGGTTTTCATTCTATTTCTTGTCCTT
CCCCCCCCCCGTCGGAGTCGCTCTTTTTGTTTAGCCCGCACCCTCTGCTG
TGTTTGGTCAACTGGACAAAAAAAAAACCGTATGGCACAAACAACAGTCA
AGGACGTGTCTTGACAAGCCGCATTTCTTTTTTTGTTGTCGAGAAGGGTA
GGGCAAAATCTCCATGACATGTCGACAAGGGTAGGACAGAATCTCGATGA
CATGCCTCCGCTTACGCTCGATTTCGATTAAACCCTTGGGCAGATTTTAG
ACGTATTATACCCCCCCCGAACCCTGTTTTTCTCGTCCTGCCCTTCCGTG
CCCCCGCCCACATCCCTAACGGTTACCTTTTCCCGTTTGTTGTTGGTTGT
TGGTTGTTGTTGTTGTTGTTATTGTTGTCGTTGTTTTGTTGTTGTCGCTG
TTGTCGTCGTCGTCGTCGTCGTCGTCGTAGAGGAACGCGCCGCCAAGCCC
ACCTCTCATGTCCGCGCTGCCTCCCAAGCGTCCGAGGTCGCCAGGAGGCG
ATCACGATGACGACCCGTCCCACGGAAAGCGCCCCCGCAGCGGGTAGACG
GGTAGAAGGCCTGGCGGATGTTAAGAGGGGTTGGGCACTACCGTGGTAGC
GTGCTTGCGGCGTATATCGTACCGCCCACGTAGGTTTGCGGTAGTGTGGG
TGTGGTGTGGTTTGGTGGATGCCTCGTCTGTGTCTGTGCCTGTGTGGCGG
TTGTTGGCGGTGCCCTGTAGAGCGAGCGGCACTTGGAGTGAAATTTTGTC
GTGCGTGCGATCAATCAGGGTACACGTTCCGCTTTCGGGTTCCATCCCAG
GGTAATCGAAGTTTCGGTGCGTTTCCGGCAAGAGCCGACATGATCAAAGG
AGGAGGAAGGTTGCGCGCAAAGGGTCAAGTAAAAAAAGCGTGAGGAGTTT
TCCGAAAGCTTGTCAGGGATGGAGGGCGGCAGGATGTTTCAAAACCACGG
TACTGGCACTGCAGCAAGTATGATGGTGATGATGATGATGATGAAAACCA
CTGGTTCAAAATCGACAGACTTGGTTTTAATCTTTTCATTCGCCTTGGCT
TTCCAGGATCATGAAAACGATCGGCTAGCTAGATCCGCTTGGTTATTGTG
ATCAACAGCTGGGGGTGTTGCTGCGGTCGATGCCGCAGGAACGGAAGCTG
AGCTTTCGTCGATGTTGCTTTTAGTCTTGGGAGGGTGTGTGTGTGCGTGG
CAGATGATGTTTTTTGGAATCTGGGAAGTTGTGAAAATTCGCCCAGCAGG
TCCTACAAGCGTCTGTATGCTCCTCTCGTAAACGGCTTGTGACCCAAGAC
CCAAACACCACCGCAGAAAAGAGGCGATGCGTCCACGCTTGCGTGGTTGC
CCGCCAGGGCAGAGGGGCGCTGTGTGTGATGTGCTGGGGGGTTAGGGCCT
ACTTGATGAACGCGTGCAACGCGTGACACCACGAGCCTTTGTCTGTTGCA
GCGATTATTTCGGTTATGTCCCGTTTCGAGTTCATGCGAGCTCTGCGGGT
TCTTTGTAGCAAACCCTGCTATCTGTCTAGGTGCACGCAGCAGTGGCGCC
TGTGAGAACAGCGTCACTTGGCTGTTGTGTTTTTGTACCTGGTTTGCTGC
TGACCCGTTGCTGCCACGCCGCCCTCCTCGGAAAGGTTCAGCACACCTTT
TATGCCCCATCGGGTCGTGTGCAAAGTTAGGATTGCAATCCCACACAGAA
TACGGAGTACTAGGAAGCACGGCGGTGGACGCTGGATCCGTTCCACCCCT
TTGTAGTCATGTCACGTCGCTCCACGCACTCTCTTTCTCTTTCACTCTGT
GGTGTATCGTCGCACTTGAATCAAGCGGAGATGAAGATATGAACATGCGT
TATTTTTGGGCTAGCGTGTGCTTTTTTATGTTTTTTTGTTTTTGCCAGTT
TTTAAAGGAAGGCGCAGGAACTTCGCGTTGACGTGATTGGTTCTCTTTAC
TATTTTTGCGTTTTTTTTGTGGCTTTAGGATGGGCTCAAACTGGAGTGAG
TCCCATGAACTGGTTCCAGTGTGTTGTTGTTTGTTGTGTGTACAGCAAGT
GGTTTCTGAGGCCGTGCCGTGTGCAATGACGATGTGGCGGGCTCAAGTGT
AGTACGGCGACATGTTGCTTGCGCGCACAGAGCCGGCCATTCATGTATCA
GTCATGTCATTTTTTTTTCGAAGTGTCCTCTTTAGGTGTTCGGCCGCGCC
GCCCAGTCTAACAATTTGTGCAAGTAGATACACAAGTGTCGCACGTTCGC
ACGAATTGTTTTTTTCTCTTTCTGAGAGAAAACCTTGGTAGCGTAATGGA
CCGAGCTGGAGGTTTGGGTGAGATTTCGGAAGCCCAAGCCTTTTGGCGCT
CCCCTGTCTGCGAGAGAAAGGGGAAGGAGAACAATCAATCGCGAATCAGA
CGTTTGCATGCACCGCAGGAGGTAAGTGGAGACATTCCCTCCCATGTGAC
CCCGGATGGTAGCCTAGCTAGTTGTAGTGAAGAGGAGGAGGCAGGCCACG
AAAAAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:384334..387689+

>mRNA_C-linearis_contig10.448.1 ID=mRNA_C-linearis_contig10.448.1|Name=mRNA_C-linearis_contig10.448.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at C-linearis_contig10:384334..387689+ (Chordaria linearis ClinC8C monoicous)
ATGGGCGTGCGGCAGATGGGCGTGCGGCAGAGGAACGCGCCGCCAAGCCC
ACCTCTCATGTCCGCGCTGCCTCCCAAGCGTCCGAGGTCGCCAGGAGGCG
ATCACGATGACGACCCGTCCCACGGAAAGCGCCCCCGCAGCGGGTAGAGG
AACGCGCCGCCAAGCCCACCTCTCATGTCCGCGCTGCCTCCCAAGCGTCC
GAGGTCGCCAGGAGGCGATCACGATGACGACCCGTCCCACGGAAAGCGCC
CCCGCAGCGGGTAG
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