prot_C-linearis_contig93.16902.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig93.16902.1
Unique Nameprot_C-linearis_contig93.16902.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length475
Homology
BLAST of mRNA_C-linearis_contig93.16902.1 vs. uniprot
Match: A0A6H5JRD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD9_9PHAE)

HSP 1 Score: 442 bits (1137), Expect = 2.230e-150
Identity = 224/260 (86.15%), Postives = 240/260 (92.31%), Query Frame = 0
Query:   22 MLRLVALVISISVLFPWLNAERRGRMRIFFLHWVSGVMYVMSQFIMSVMVLNCWSSKDDSGPFIYFLKFVELTVLNLWSISSFAIAVLIASIVQSFEKFRLVPTTIGSARMSYLCVTAAVLATVMSAVFWNGLLITGGYFWVTNTNNSSHGRWITLSFGATQTVAGMLMALTVLFILTGERLSSLRVCCRTSQRVKFHFILTIFGTCVYVYNGIVLLFDEFSDAKISKRLVIIGWCSRYAHVIADTGIIFGAFYELEKRE 281
            MLRLVALVISISVLFPWL++ERRGRMRIFFLHW SGVMYVMSQFIMSVMVLNCWSS+DDSGPFIYFLKF ELTVLNLWSISS AIA+LIASIVQSF   R VPT IGS R + +CV  AVLATV+SAVFWNG+LITGGYFWVTNT+N SHGRWI+LSFGATQTVAG+LMALTVLF +TGER SSLRVCC+TSQRVKFHFILTIFGT VY+YNGIVL+FDEFSD KIS RLVIIGWCSRYAHVIADTGIIFGAFY LEK+E
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFWELTVLNLWSISSLAIAILIASIVQSFVTLRRVPTMIGSTRAACVCVVLAVLATVLSAVFWNGVLITGGYFWVTNTSNESHGRWISLSFGATQTVAGILMALTVLFTMTGERFSSLRVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISTRLVIIGWCSRYAHVIADTGIIFGAFYALEKKE 260          
BLAST of mRNA_C-linearis_contig93.16902.1 vs. uniprot
Match: D7FUL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL6_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 8.690e-150
Identity = 220/260 (84.62%), Postives = 239/260 (91.92%), Query Frame = 0
Query:   22 MLRLVALVISISVLFPWLNAERRGRMRIFFLHWVSGVMYVMSQFIMSVMVLNCWSSKDDSGPFIYFLKFVELTVLNLWSISSFAIAVLIASIVQSFEKFRLVPTTIGSARMSYLCVTAAVLATVMSAVFWNGLLITGGYFWVTNTNNSSHGRWITLSFGATQTVAGMLMALTVLFILTGERLSSLRVCCRTSQRVKFHFILTIFGTCVYVYNGIVLLFDEFSDAKISKRLVIIGWCSRYAHVIADTGIIFGAFYELEKRE 281
            MLRLVALVISISVLFPWL++ERRGRMRIFFLHW SGVMYVMSQFIMSVMVLNCWSS+DDSGPFIYFLKF+ELT LNLWSISS AIA+LIASIVQSF K R VPT IGS R + +C+  A+LATV+SAVFWNG+LITGGYFWVTNT N SHGRWI+LSFGATQTVAGMLMAL VLF ++GER SSL+VCC+TSQRVKFHFILTIFGT VY+YNGIVL+FDEFSD KISKRLVIIGWCSRY HVIADTGIIFGAFY LEK+E
Sbjct:    1 MLRLVALVISISVLFPWLSSERRGRMRIFFLHWASGVMYVMSQFIMSVMVLNCWSSRDDSGPFIYFLKFLELTALNLWSISSLAIAILIASIVQSFVKLRRVPTMIGSTRAACVCLVLAILATVLSAVFWNGVLITGGYFWVTNTGNESHGRWISLSFGATQTVAGMLMALAVLFTVSGERFSSLKVCCKTSQRVKFHFILTIFGTFVYLYNGIVLMFDEFSDFKISKRLVIIGWCSRYVHVIADTGIIFGAFYALEKKE 260          
BLAST of mRNA_C-linearis_contig93.16902.1 vs. uniprot
Match: D7FUL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.100e-59
Identity = 104/171 (60.82%), Postives = 132/171 (77.19%), Query Frame = 0
Query:   47 MRIFFLHWVSGVMYVMSQFIMSVMVLNCWSSKDDSGPFIYFLKFVELTVLNLWSISSFAIAVLIASIVQSFEKFRLVPTTIGSARMSYLCVTAAVLATVMSAVFWNGLLITGGYFWVTNTNNSSHGRWITLSFGATQTVAGMLMALTVLFILTGERLSSLRVCCRTSQRVK 217
            M IF LHW S V YV+SQ +MSVMV+NCWSSK  +GP IY LKFVELT +NLW+ISS AI++LIASIVQ+F K R VP  IGS+R+ + CV  A+  T++SA FWN +L+TG YFW+TN N+ +  RWI+LSF  TQ +AG LMALT++F+ TG+R  SL VC RTS+R+K
Sbjct:    1 MNIFCLHWASAVTYVVSQLVMSVMVINCWSSKTRAGPVIYVLKFVELTSINLWAISSMAISLLIASIVQAFSKMRRVPRVIGSSRVIWSCVFVAMGLTLLSAPFWNDVLVTGSYFWITNRNDPNLARWISLSFVTTQGIAGALMALTLVFVATGKRRKSLLVCIRTSKRMK 171          
BLAST of mRNA_C-linearis_contig93.16902.1 vs. uniprot
Match: A0A7S2US30_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US30_9STRA)

HSP 1 Score: 144 bits (363), Expect = 2.170e-35
Identity = 104/306 (33.99%), Postives = 163/306 (53.27%), Query Frame = 0
Query:    7 DYPTLGMQAGEELATMLRLVALVISISVLFPWLNAERRGRMRIFFLHWVSGVMYVMSQFIMSVMVLNCWSSKDDSGPFIYFLKFVELTVLNLWSISSFAIAVLIASIVQSFEKFRLVPTTIGSARMSYLCVTAAVLATVMSAVFWNGLLITGGYFWVTNTNNSSHGRWITLSFGATQTVAGMLMALTVLFILTGERLSSLRVCCRTSQRVKFHFILTIFGTCVYVYNGIVLLFDEFSD--AKISKRLVIIGWCSRYAHVIADTGIIFGAFYELEKREGQQETTCARAAAFHIHTPDIERTSRGVHP 310
            D P   M  GE +A  +RLVAL+++ S++  WLN     ++ + F +W S +MY +SQ IM+ MV+NC  S +  G  IY +KFVEL  +N  + SS  I   +  I++++ K R        +R   + +T A++ T  SA++W+ L+IT GYFWV +  N  HGRWI LSF   Q++ GM+M L +L +      S+++ C + S RV+   +L+ F     VYNGI  + DE      + S+  V+IGW SR+  +  D+ +        E     + T     A+  ++  D+E  S  V P
Sbjct:   27 DMPAASMH-GESIANSMRLVALLVAGSLVCSWLNNRWFIKLPVLFFNWASNLMYALSQQIMATMVINC--SCNFRG-IIYAIKFVELFSVNCIATSSLVIFYNLFMILKNYHKNRRF-RAYSQSRAIIIAMTVALVFTAASALYWDMLIITNGYFWVWS-ENPEHGRWINLSFTIVQSLVGMVM-LVLLGVCISFYKSAVK-CFKNSSRVRIFTVLSTFAFLCNVYNGISSMLDESGSFTPRTSRMFVMIGWTSRFIQICFDSCVTGWVLNSAELNHRLKLTQDVNLASAEVN--DVEVMSPQVSP 322          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig93.16902.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JRD9_9PHAE2.230e-15086.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL6_ECTSI8.690e-15084.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL8_ECTSI1.100e-5960.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2US30_9STRA2.170e-3533.99Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..173
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..133
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..39
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..114
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 174..198
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 134..162
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 218..239
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 40..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 199..217
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 276..474
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..72
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 251..275
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 240..250
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 73..83
NoneNo IPR availableTMHMMTMhelixcoord: 134..156
NoneNo IPR availableTMHMMTMhelixcoord: 218..240
NoneNo IPR availableTMHMMTMhelixcoord: 91..113
NoneNo IPR availableTMHMMTMhelixcoord: 20..42
NoneNo IPR availableTMHMMTMhelixcoord: 176..198
NoneNo IPR availableTMHMMTMhelixcoord: 49..71

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig93contigC-linearis_contig93:222251..235500 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig93.16902.1mRNA_C-linearis_contig93.16902.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig93 222010..238892 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig93.16902.1 ID=prot_C-linearis_contig93.16902.1|Name=mRNA_C-linearis_contig93.16902.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=475bp
MTDCAPDYPTLGMQAGEELATMLRLVALVISISVLFPWLNAERRGRMRIF
FLHWVSGVMYVMSQFIMSVMVLNCWSSKDDSGPFIYFLKFVELTVLNLWS
ISSFAIAVLIASIVQSFEKFRLVPTTIGSARMSYLCVTAAVLATVMSAVF
WNGLLITGGYFWVTNTNNSSHGRWITLSFGATQTVAGMLMALTVLFILTG
ERLSSLRVCCRTSQRVKFHFILTIFGTCVYVYNGIVLLFDEFSDAKISKR
LVIIGWCSRYAHVIADTGIIFGAFYELEKREGQQETTCARAAAFHIHTPD
IERTSRGVHPTAATTAGTATTTGLSPATGVSIATTTTTKLGPSSTAANRN
NAGSDIEADLELANGFESPVDGVEDSTAGGCRSPLPRPPPAGGGGGGVAN
GSSSAAGQTPGSKLEAASRGISNAYGNGASAGGHNGGPGHSGGPSSRTPS
WRAMQASASKATASVTPTTVGIDS*
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