prot_C-linearis_contig91.16825.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig91.16825.1
Unique Nameprot_C-linearis_contig91.16825.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length431
Homology
BLAST of mRNA_C-linearis_contig91.16825.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 549 bits (1415), Expect = 2.460e-192
Identity = 281/416 (67.55%), Postives = 315/416 (75.72%), Query Frame = 0
Query:   23 VLWTGLWTLLDRHVPGGTGLWKELALAVAGAWGMVWTRTLFSNAGMDSLDYEGSLAEMGSLLAQGRLRWRDKARFYVRSFLAIAGSILFWDGVYTLCDEHTWEGTLTYNLACASLGGAGMVWVMVSEDGDEELEAR-AGLEPPPRLGSALEGIRSGDRFSRLSPLEKGRLYLKALFCNVCGVVFWKGVEEVIEDNGPDEDWTGLVYFVVGISILLATERLSMNSGLDDGLPPVMELRQAPAG------TWETSTT-PSRRDPQRSHPFFADSIVEDAFCPGCSWLLAEVGGILGF-------GAEAGSARRKRGDF-FPPWVTTAMELTGVVFAWTGIEWYVWDGDYISDSWIRDVSYVGVGLGLLMSTGTFFNLAGTISPVAALKHVHQHNRHEDTAATTPLLSNLDEDFLPPET 422
            +LWTG+WTLLDRHVPGGTGLWKEL LAVAGAW MVWTRT FSNAGMDSLD EGSL+EMGSLL QGRLRWRD+A+FY RS LAI GSILFWDGVY LCDEHTWEGTLTYNL CASLGGAGMVWVM SED DE +     G  P   + SA    RSG R SRL P  +GRLY KALFCNVCGVVFWKGVEE+IEDNGP++DWTGLV+FV+GISIL+AT+RLSMNSGL+DGLPP ++++  PA        W+ S++ P  R P  S P   D +V D  CPGCS L+A      G        G  AGS RR RG    P WVTTA ELTGVVFAWTGIEWYVW+GDYI DS +RD+ Y+ VGLG+L+ TGTFFNLAGTISPVAALK VHQHNRHE+     PLLSN D+    P+T
Sbjct:    1 MLWTGVWTLLDRHVPGGTGLWKELGLAVAGAWIMVWTRTFFSNAGMDSLDQEGSLSEMGSLLVQGRLRWRDEAKFYARSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDEDERMRGDDIGGGPAAMMASAAN--RSGGRSSRLGPGNRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSS-PLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGTISPVAALKQVHQHNRHEEAM---PLLSNFDQPETEPDT 410          
BLAST of mRNA_C-linearis_contig91.16825.1 vs. uniprot
Match: A0A835Z909_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z909_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.750e-10
Identity = 53/179 (29.61%), Postives = 69/179 (38.55%), Query Frame = 0
Query:  218 PDEDWTGLVYFVVGISILLATERLSMNSGLDDGLPPVMELRQAPAGTWETSTTPSRRDPQRSHPFFADSIVEDAFCPGCSWLLAEVGGILGFGAEAGSARRKRGDFFPPWVTTAMELTGVVFAWTGIEWYVWDGDYISDSWIRDVSYVGVGLGLLMSTGTFFNLAGTISPVAALKHVHQ 396
            PD+ W     FV GI +L A +RL  N GL DG          P G         R+  Q                     + + +G  L                       A EL  V   WTG EW++WDG    ++  RD  Y  VG  +L+ TGTF +LAGT+SP+     VHQ
Sbjct:    2 PDKWWAPATLFVGGIIVLRALDRLDTNLGLVDG---------GPKG--------GRKHTQSDK------------------VQSAMGQTL---------------------LNASELIAVCLIWTGCEWFIWDGFLFHETCTRDSLYALVGFAVLLCTGTFVSLAGTVSPMGVYGRVHQ 124          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig91.16825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP11_ECTSI2.460e-19267.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z909_9STRA1.750e-1029.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 327..349
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..116
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 191..209
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 148..190
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 350..368
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 210..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 117..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 369..391
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 392..430
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..96
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..147
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 221..238
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 239..326
NoneNo IPR availableTMHMMTMhelixcoord: 97..116
NoneNo IPR availableTMHMMTMhelixcoord: 15..32
NoneNo IPR availableTMHMMTMhelixcoord: 126..148
NoneNo IPR availableTMHMMTMhelixcoord: 369..391
NoneNo IPR availableTMHMMTMhelixcoord: 327..349

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig91contigC-linearis_contig91:414010..422142 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig91.16825.1mRNA_C-linearis_contig91.16825.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig91 413998..423006 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig91.16825.1 ID=prot_C-linearis_contig91.16825.1|Name=mRNA_C-linearis_contig91.16825.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=431bp
MPVECSPCLDLLRGGLSWPGIVVLWTGLWTLLDRHVPGGTGLWKELALAV
AGAWGMVWTRTLFSNAGMDSLDYEGSLAEMGSLLAQGRLRWRDKARFYVR
SFLAIAGSILFWDGVYTLCDEHTWEGTLTYNLACASLGGAGMVWVMVSED
GDEELEARAGLEPPPRLGSALEGIRSGDRFSRLSPLEKGRLYLKALFCNV
CGVVFWKGVEEVIEDNGPDEDWTGLVYFVVGISILLATERLSMNSGLDDG
LPPVMELRQAPAGTWETSTTPSRRDPQRSHPFFADSIVEDAFCPGCSWLL
AEVGGILGFGAEAGSARRKRGDFFPPWVTTAMELTGVVFAWTGIEWYVWD
GDYISDSWIRDVSYVGVGLGLLMSTGTFFNLAGTISPVAALKHVHQHNRH
EDTAATTPLLSNLDEDFLPPETAQLPRSPL*
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