prot_C-linearis_contig90.16790.1 (polypeptide) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE) HSP 1 Score: 407 bits (1045), Expect = 1.730e-136 Identity = 261/360 (72.50%), Postives = 288/360 (80.00%), Query Frame = 0
Query: 1 MAFLLESQMTVTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEPEKAKKPSMTFGAPSGSTSNGGKGNSSGSGTNGKGNTVTAKNRPNGKNKELAARQQKGAAQTNARKRRILGHDSTGSSXXXXXXXXXXXXXXXELPVEMRNMVNM---GMDGMGACFG 357
MAFLLESQM + ALE SR+KL LSVIEEYHGPIV TVAEVLMRA+RTTLAELTRLV RDQGIMGVSRAGKT+TKVTAANVKESLLIMTQHNMV+AAMPTE+EMR+ARA+ + ++NIR+HYTLLPLEVL+RTRGPQFHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVKEELL R EA RARKA D XXXXXX EVT+E IQKSFEELVM KYIDKV KLDLVTPTVEPEKAKKPSMTFGAP+ + S KG + +A N NG+NKELA RQQKGAAQ +ARKRR+LG DS + XXXXXXXXXXXXELPVEMR++V+ G DG GA G
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSG----RSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKA---LANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDS--------------KGKSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXXELPVEMRSLVSSMEEGFDGGGATDG 339
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI) HSP 1 Score: 380 bits (976), Expect = 4.740e-128 Identity = 234/313 (74.76%), Postives = 250/313 (79.87%), Query Frame = 0
Query: 1 MAFLLESQMTVTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEPEKAKKPSMTFGAPSGSTSNGGKGNSSGSGTNGKGNTVTAKNRPNGKNKELAARQQKGAAQTNARKRRILG 313
MAFLLESQM + ALE SR+KL LSVIEEYHGPIV TVAEVLMRADRTTLAELTRLV RDQGIMGVSRAGKT TKVTAANVKESLLIMTQHNMV+AAMPTE+EMR+ARA+ + +G NIR+HYTLLPLEVL+RTRGPQFHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVKEELL R EA RARKA D XXXXXX EVT E IQKSFEELVM KYIDKV KLDLVTPTVEPEKAKKPSMTFGAP+GS N NG+NKELA RQQKGAAQT+ARKRR+LG
Sbjct: 1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSG----NIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKA---LANPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXX-------XXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: A0A835ZD91_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD91_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.510e-15 Identity = 69/233 (29.61%), Postives = 115/233 (49.36%), Query Frame = 0
Query: 11 VTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEP 243
+T+ +QKLAL+++ E+ G IVK VA+ L+R D+ L ++ R V+R+ G R +++ VK +LL++ QHN + M T E+RR++ + ++++Y L E + R RGP+F AS +A +V+ L HGR DV +++ + K+ G DE I+++F+ LV ++I KVA LDL P+ P
Sbjct: 1 MTSCALGQQKLALNILGEHFGDIVKVVAQALLRVDKAMLGDIIRRVKREIED-GRRRGPGPPLQISGKQVKSALLVLCQHNCLDVIMQTAEELRRSKVD---------GPLKLYYKLRVSECIERLRGPRFVHLASVMHGALAAAVVEALLLHGRLCRADVVAHVVNVLKADKQ---------GYMDENALRRR----------IERAFDTLVQERFIVKVAPLDLTRPSPPP 204 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 3
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_C-linearis_contig90.16790.1 ID=prot_C-linearis_contig90.16790.1|Name=mRNA_C-linearis_contig90.16790.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=416bpback to top Annotated Terms
The following terms have been associated with this polypeptide:
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