prot_C-linearis_contig90.16790.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig90.16790.1
Unique Nameprot_C-linearis_contig90.16790.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length416
Homology
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 407 bits (1045), Expect = 1.730e-136
Identity = 261/360 (72.50%), Postives = 288/360 (80.00%), Query Frame = 0
Query:    1 MAFLLESQMTVTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEPEKAKKPSMTFGAPSGSTSNGGKGNSSGSGTNGKGNTVTAKNRPNGKNKELAARQQKGAAQTNARKRRILGHDSTGSSXXXXXXXXXXXXXXXELPVEMRNMVNM---GMDGMGACFG 357
            MAFLLESQM + ALE SR+KL LSVIEEYHGPIV TVAEVLMRA+RTTLAELTRLV RDQGIMGVSRAGKT+TKVTAANVKESLLIMTQHNMV+AAMPTE+EMR+ARA+ +      ++NIR+HYTLLPLEVL+RTRGPQFHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVKEELL R  EA RARKA        D XXXXXX    EVT+E IQKSFEELVM KYIDKV KLDLVTPTVEPEKAKKPSMTFGAP+ + S              KG + +A N  NG+NKELA RQQKGAAQ +ARKRR+LG DS  +    XXXXXXXXXXXXELPVEMR++V+    G DG GA  G
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSG----RSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKA---LANPEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADNDS--------------KGKSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXXELPVEMRSLVSSMEEGFDGGGATDG 339          
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 380 bits (976), Expect = 4.740e-128
Identity = 234/313 (74.76%), Postives = 250/313 (79.87%), Query Frame = 0
Query:    1 MAFLLESQMTVTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEPEKAKKPSMTFGAPSGSTSNGGKGNSSGSGTNGKGNTVTAKNRPNGKNKELAARQQKGAAQTNARKRRILG 313
            MAFLLESQM + ALE SR+KL LSVIEEYHGPIV TVAEVLMRADRTTLAELTRLV RDQGIMGVSRAGKT TKVTAANVKESLLIMTQHNMV+AAMPTE+EMR+ARA+ +  +G    NIR+HYTLLPLEVL+RTRGPQFHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVKEELL R  EA RARKA        D XXXXXX    EVT E IQKSFEELVM KYIDKV KLDLVTPTVEPEKAKKPSMTFGAP+GS                        N  NG+NKELA RQQKGAAQT+ARKRR+LG
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSG----NIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKA---LANPEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXX-------XXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299          
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Match: A0A835ZD91_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD91_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.510e-15
Identity = 69/233 (29.61%), Postives = 115/233 (49.36%), Query Frame = 0
Query:   11 VTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLAELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTEREMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFSKVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEXXXXXXQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEP 243
            +T+    +QKLAL+++ E+ G IVK VA+ L+R D+  L ++ R V+R+    G  R      +++   VK +LL++ QHN +   M T  E+RR++ +           ++++Y L   E + R RGP+F   AS     +A  +V+  L HGR    DV   +++  +  K+         G  DE                I+++F+ LV  ++I KVA LDL  P+  P
Sbjct:    1 MTSCALGQQKLALNILGEHFGDIVKVVAQALLRVDKAMLGDIIRRVKREIED-GRRRGPGPPLQISGKQVKSALLVLCQHNCLDVIMQTAEELRRSKVD---------GPLKLYYKLRVSECIERLRGPRFVHLASVMHGALAAAVVEALLLHGRLCRADVVAHVVNVLKADKQ---------GYMDENALRRR----------IERAFDTLVQERFIVKVAPLDLTRPSPPP 204          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig90.16790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JM01_9PHAE1.730e-13672.50DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI4.740e-12874.76DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
A0A835ZD91_9STRA1.510e-1529.61DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 172..192
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 18..336

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig90contigC-linearis_contig90:613017..617720 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig90.16790.1mRNA_C-linearis_contig90.16790.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig90 613017..619406 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig90.16790.1 ID=prot_C-linearis_contig90.16790.1|Name=mRNA_C-linearis_contig90.16790.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=416bp
MAFLLESQMTVTALEPSRQKLALSVIEEYHGPIVKTVAEVLMRADRTTLA
ELTRLVQRDQGIMGVSRAGKTKTKVTAANVKESLLIMTQHNMVSAAMPTE
REMRRARANLNSAAGAAAANIRMHYTLLPLEVLMRTRGPQFHSHASNTFS
KVAGLIVDCFLRHGRRTLPDVKEELLSRAREAKRARKAQQASGGLADEDD
DDDDQVEAEVTAEGIQKSFEELVMGKYIDKVAKLDLVTPTVEPEKAKKPS
MTFGAPSGSTSNGGKGNSSGSGTNGKGNTVTAKNRPNGKNKELAARQQKG
AAQTNARKRRILGHDSTGSSGKEGTNNSDDSDDEDELPVEMRNMVNMGMD
GMGACFGGAANAEDRPPPAKRKKMANGSGSGNGDTASAGRTRGRGRSRGR
GAKRGGISSSSKGKRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039748RPC3