prot_C-linearis_contig9.16743.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16743.1
Unique Nameprot_C-linearis_contig9.16743.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length249
Homology
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A6H5KI28_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KI28_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 5.060e-127
Identity = 183/242 (75.62%), Postives = 205/242 (84.71%), Query Frame = 0
Query:    1 MRSRAPLRHLSGQLSVATSSPWVWVSQGVDPTTAIHAPPRERR-SFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTL 241
            MRS A  R L GQLSVATSSPWVWV+ GVDP +AIH PPR+R  S R EYV+PAS NHELPTAG PEVAF GRSNQGKSTL GKLLG+ KLVRASKAPGCT+TVNYFALREGG ++P  A+LVDLPGYGFARESK+AVRGWN  V  YLE R+ SVLRRTFVLVD RHGLQ DDE+M++FLS   VENMVVLTKV+KASP QL++SLEG FQ+A+ HPAT+P+VHC+SAHKG GM EF NTL
Sbjct:    1 MRSSAAFRRLRGQLSVATSSPWVWVATGVDPASAIHPPPRKRGLSLRGEYVSPASFNHELPTAGTPEVAFIGRSNQGKSTLVGKLLGNPKLVRASKAPGCTKTVNYFALREGGAESP-QAFLVDLPGYGFARESKRAVRGWNQAVGSYLEGRSSSVLRRTFVLVDGRHGLQPDDEQMLSFLSSRDVENMVVLTKVDKASPAQLVQSLEGAFQLAVHHPATLPIVHCISAHKGQGMGEFQNTL 241          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A835YYM3_9STRA (YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM3_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.720e-61
Identity = 107/238 (44.96%), Postives = 144/238 (60.50%), Query Frame = 0
Query:   18 TSSPWVWVSQGVDPTTAIHAPP----RERRSFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFAL------REGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRLT 245
            T SPWVW  +G+D  +A+H       R  R+ +A +  P     +LP AG PEVAFCGRSN GKSTL G L+ + KLVRASK PGCTRTVNYF L      ++G        Y+VDLPGYGFA+   + V+ W + V  ++  R  ++LRRTFVL+D RHG++  DE+MM  L   GV   +VLTK ++ +   +   +EGV + A  H A  PVVH VSA  G G+ +  +T+  +T
Sbjct:    3 TKSPWVWTMKGMDADSAVHRTDPDIARGCRAMQAGFFPPNLFKFDLPKAGVPEVAFCGRSNVGKSTLVGTLINNTKLVRASKEPGCTRTVNYFGLTAPTRIKKGSEVDRAAVYMVDLPGYGFAKAPVQEVQAWTAAVEGFIVNRDCALLRRTFVLIDGRHGVKQHDEDMMTLLDDHGVSYQIVLTKADQLTKRDIAVVVEGVMRAAARHAACYPVVHVVSARDGHGVLQLLDTIYYVT 240          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A482SLS6_9ARCH (Probable GTP-binding protein EngB n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLS6_9ARCH)

HSP 1 Score: 171 bits (432), Expect = 9.500e-49
Identity = 90/196 (45.92%), Postives = 124/196 (63.27%), Query Frame = 0
Query:   44 SFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALL--HPATVPVVHCVSAHKGLGMDEF 237
            S    Y+ P+  NH+LP+AGRPEVAF GRSN GKS+L   LLG+  L+R SK PGCT T+NY+AL +G        YL+D+PGYGFA+ +K+  + W   V  YL  R + +LRR FVL+DSR G+Q  D EMM  L+   +   VVLTK +  S  ++ + L  +F V     + + +P+VH VSA KGLG+++ 
Sbjct:   70 SLNPTYIPPSYFNHQLPSAGRPEVAFVGRSNVGKSSLVEALLGTKGLLRISKEPGCTTTLNYYALAKGSALDDHACYLIDMPGYGFAKIAKQQQKKWLEIVNSYLMNRDQLLLRRVFVLIDSRRGVQMQDVEMMEMLNHAHIPYQVVLTKKDLVSDKEIKEKLFELFCVISRKKNNSCLPLVHVVSALKGLGLEDL 265          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A7S3GRN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRN4_9STRA)

HSP 1 Score: 163 bits (413), Expect = 6.660e-46
Identity = 87/203 (42.86%), Postives = 119/203 (58.62%), Query Frame = 0
Query:   44 SFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQV--ALLHPATVPVVHCVSAHKGLGMDEFSNTLSRL 244
            S    Y+ P+ LN+ LPT G PE AF GRSN GKS+L   L+G+ KLV  SK PGCTR++NY+ L +        AY VDLPGYGFAR+SK+  + W + +  Y+ +R +SVLRR FVLVDSR G+   D  MM  L+   +   +V TKV+  S  +L  SL   F V  + +  A +P +  +S     G+D F  T+  +
Sbjct:   68 SMHPSYIHPSELNYGLPTNGVPEFAFVGRSNVGKSSLIDALMGNRKLVNVSKEPGCTRSINYYGLSKEKTGKDYSAYFVDLPGYGFARKSKEEQQKWTNMIHQYVSSRDQSVLRRVFVLVDSRRGINNHDATMMDTLNKTFIPYQIVFTKVDLTSKQELYTSLGQAFSVINSSMGGACLPFIPTLSTVDKTGLDHFKLTMGEI 270          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A6M8VVN7_9PROT (Probable GTP-binding protein EngB n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6M8VVN7_9PROT)

HSP 1 Score: 156 bits (395), Expect = 6.290e-44
Identity = 86/205 (41.95%), Postives = 116/205 (56.59%), Query Frame = 0
Query:   40 RERRSFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRL 244
            R+  S    +VT A+    LP    PEVAF GRSN GKS+L   L G   L R S  PG T+ +N+FA+ +G         LVDLPGYG+A+ SK AV+ WN+ + DYLE R    LR  ++L+DSRHGL+  D+E+M  L   GV   ++LTK +K    Q+ K +     V   HPA  PV H  S+HK  G+D+    + +L
Sbjct:   10 RQMFSGGCVFVTGAATVDALPDTSVPEVAFVGRSNVGKSSLLNALTGQASLARTSHTPGRTQQLNFFAVSDGS------IRLVDLPGYGYAKASKGAVKSWNNLIRDYLEYRPN--LRHVYILIDSRHGLKEGDKEVMDLLDKMGVAYQIILTKSDKIKKEQMDKVVAATEAVLKKHPAAFPVPHSTSSHKRYGVDDMQRAVFKL 206          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A2E1XCC7_9PROT (Probable GTP-binding protein EngB n=1 Tax=Parvularcula sp. TaxID=1979207 RepID=A0A2E1XCC7_9PROT)

HSP 1 Score: 155 bits (391), Expect = 2.440e-43
Identity = 91/199 (45.73%), Postives = 110/199 (55.28%), Query Frame = 0
Query:   46 RAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRL 244
            RAE++        LP  G  EVAF GRSN GKSTL   L G + L RAS  PG TR +NYF L    R       LVDLPGYG+A+ S+K V  W +   D+L  R RSVLRR  VLVDSRHGL+  D E+M  L    V   +VLTK +K  P  L K +E   Q  +  PA  P+V   S+ KG G+ E    L+ L
Sbjct:   23 RAEFMLGVVDLDALPDEGPAEVAFAGRSNVGKSTLLNALTGQNGLARASNTPGRTREINYFDLEGAMR-------LVDLPGYGYAKASRKDVERWTALTRDFL--RGRSVLRRVCVLVDSRHGLKQTDREVMDLLDEAAVNYQIVLTKTDKIKPTALEKLIEATGQQIMKRPAAHPIVRATSSEKGDGIAELRADLAML 212          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A1I7NU75_9HYPH (Probable GTP-binding protein EngB n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7NU75_9HYPH)

HSP 1 Score: 155 bits (391), Expect = 2.660e-43
Identity = 81/190 (42.63%), Postives = 109/190 (57.37%), Query Frame = 0
Query:   55 LNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRL 244
            L+H LP   RPE+AF GRSN GKS+L   L+G  +L RAS  PG T+ +N+F       D     +LVD+PGYGFA   K+ V  WN  +  YL    R  L R F+L+D+RHGL+  D+E++  L G  V   VVLTK +K  P  L K +E   +    HPA  P +   S+ KGLG +E   T+++L
Sbjct:   32 LDH-LPPDDRPEIAFAGRSNVGKSSLINALVGQLRLARASNTPGRTQELNFFT------DPERDLFLVDMPGYGFAEAPKEKVAAWNKVIRAYLAG--RRTLLRVFLLIDARHGLKPPDDEILDLLDGAAVSYQVVLTKADKIKPTDLEKVMERTLKALAKHPAAFPAIIATSSEKGLGFEELRGTIAQL 212          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: UPI001C99D90F (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Caenibius sp. WL TaxID=2872646 RepID=UPI001C99D90F)

HSP 1 Score: 154 bits (389), Expect = 4.590e-43
Identity = 84/194 (43.30%), Postives = 110/194 (56.70%), Query Frame = 0
Query:   44 SFRAEYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEF 237
            S R E++  A   H LP    PE+AFCGRSN GKS+L   L G   + R S  PG T+ +N+F + E     P    LVD+PGYGFA+   K V  W + V ++L  R R  L+RT +LVDSRHG++  D EMM  L    V   +VLTK +K    +L K +E   Q A  HPA  PV+H  S+ K +G+DE 
Sbjct:   17 SGRVEFLKSAPALHFLPDPEHPEIAFCGRSNVGKSSLLNALTGRRAIARTSVTPGRTQELNFFEVGE-----PTVFRLVDMPGYGFAKAPPKVVEKWRALVREFL--RGRVPLKRTLLLVDSRHGIKDVDREMMRMLDEAAVGYRIVLTKADKIKASELAKVVEATAQEARKHPAAFPVIHVTSSEKKMGIDEL 203          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: UPI00082CF604 (ribosome biogenesis GTP-binding protein YihA/YsxC n=1 Tax=Pseudovibrio hongkongensis TaxID=1647556 RepID=UPI00082CF604)

HSP 1 Score: 154 bits (389), Expect = 5.010e-43
Identity = 88/197 (44.67%), Postives = 111/197 (56.35%), Query Frame = 0
Query:   48 EYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRL 244
            +++T  +   +LP  G+ EVAFCGRSN GKS+L   L G   L R S  PG T+ +N+F    G  DAP    +VD+PGYG+A   K  V  W S V DYL  R R+ LRR F LVDSRHG++ +D E  A L    V   VVLTK +K  P QL +  E         PA  PVV   S+ KG+GMDE   T+ +L
Sbjct:   24 DFITSVAEVKKLPPLGKLEVAFCGRSNVGKSSLINALTGRKGLARTSNTPGRTQMLNFF----GEVDAPID--IVDMPGYGYAEAPKNMVDAWTSLVFDYL--RGRATLRRVFALVDSRHGIKKNDLEAYAILDKAAVPYQVVLTKADKIKPGQLARMKEATLDALKKRPAAHPVVLATSSEKGVGMDEVRATMLQL 212          
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Match: A0A0A8K171_9HYPH (Probable GTP-binding protein EngB n=3 Tax=Methyloceanibacter TaxID=1484898 RepID=A0A0A8K171_9HYPH)

HSP 1 Score: 154 bits (389), Expect = 6.300e-43
Identity = 85/205 (41.46%), Postives = 117/205 (57.07%), Query Frame = 0
Query:   45 FRA--EYVTPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCTRTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEARARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPVQLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRLTAD 247
            FRA  ++V  A     LP  GRPE+AF GRSN GKS+L   L G   L R S  PG TR +N+F L   G D    AYLVD+PGYG+A+ S+ AV+GW   + DYL+ R    L+R F+L+D+RHGL+A+D + M  +    V    VLTK +K    +L   +         HPA  P +   SA +G+G+ E   T++ LT++
Sbjct:   18 FRAPCDFVLGAVAVDGLPADGRPEIAFAGRSNVGKSSLINALTGRKTLARVSVTPGRTRELNFFTLGAQGPDGNGSAYLVDMPGYGYAKVSRSAVKGWTRLIEDYLKGRRE--LKRVFLLIDARHGLKANDRDTMKLMDESAVSYQGVLTKADKPKLSELEAVIAKTEAELAKHPAAFPHLLVTSAKEGVGIPELRATIAGLTSN 220          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KI28_9PHAE5.060e-12775.62EngB-type G domain-containing protein n=2 Tax=Ecto... [more]
A0A835YYM3_9STRA1.720e-6144.96YihA2, YihA/EngB-like GTPase n=1 Tax=Tribonema min... [more]
A0A482SLS6_9ARCH9.500e-4945.92Probable GTP-binding protein EngB n=1 Tax=archaeon... [more]
A0A7S3GRN4_9STRA6.660e-4642.86Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6M8VVN7_9PROT6.290e-4441.95Probable GTP-binding protein EngB n=1 Tax=Proteoba... [more]
A0A2E1XCC7_9PROT2.440e-4345.73Probable GTP-binding protein EngB n=1 Tax=Parvular... [more]
A0A1I7NU75_9HYPH2.660e-4342.63Probable GTP-binding protein EngB n=4 Tax=Hyphomic... [more]
UPI001C99D90F4.590e-4343.30ribosome biogenesis GTP-binding protein YihA/YsxC ... [more]
UPI00082CF6045.010e-4344.67ribosome biogenesis GTP-binding protein YihA/YsxC ... [more]
A0A0A8K171_9HYPH6.300e-4341.46Probable GTP-binding protein EngB n=3 Tax=Methyloc... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019987GTP-binding protein, ribosome biogenesis, YsxCTIGRFAMTIGR03598TIGR03598coord: 47..241
e-value: 8.8E-46
score: 153.9
IPR019987GTP-binding protein, ribosome biogenesis, YsxCHAMAPMF_00321GTPase_EngBcoord: 54..245
score: 21.709
IPR006073GTP binding domainPFAMPF01926MMR_HSR1coord: 66..182
e-value: 1.2E-14
score: 54.3
NoneNo IPR availableGENE3D3.40.50.300coord: 43..248
e-value: 1.2E-39
score: 137.7
NoneNo IPR availablePANTHERPTHR11649:SF13GTP-BINDING PROTEIN ENGB-RELATEDcoord: 44..245
NoneNo IPR availablePANTHERPTHR11649MSS1/TRME-RELATED GTP-BINDING PROTEINcoord: 44..245
IPR030393EngB-type guanine nucleotide-binding (G) domainPROSITEPS51706G_ENGBcoord: 63..247
score: 34.481
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 58..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3755420..3756166 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16743.1mRNA_C-linearis_contig9.16743.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3740522..3756672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16743.1 ID=prot_C-linearis_contig9.16743.1|Name=mRNA_C-linearis_contig9.16743.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=249bp
MRSRAPLRHLSGQLSVATSSPWVWVSQGVDPTTAIHAPPRERRSFRAEYV
TPASLNHELPTAGRPEVAFCGRSNQGKSTLTGKLLGSHKLVRASKAPGCT
RTVNYFALREGGRDAPPHAYLVDLPGYGFARESKKAVRGWNSTVMDYLEA
RARSVLRRTFVLVDSRHGLQADDEEMMAFLSGGGVENMVVLTKVEKASPV
QLLKSLEGVFQVALLHPATVPVVHCVSAHKGLGMDEFSNTLSRLTADR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019987GTP-bd_ribosome_bio_YsxC
IPR006073GTP_binding_domain
IPR030393G_ENGB_dom
IPR027417P-loop_NTPase