prot_C-linearis_contig9.16707.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16707.1
Unique Nameprot_C-linearis_contig9.16707.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length154
Homology
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BLAST of mRNA_C-linearis_contig9.16707.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.940e-71
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 0 
Query:   14 IVAVVA--PTAYAKYPQDALQCLASRKEPEGHLICPEHRNGYCVKEESTLAKEDCGRTTYFGDKWNFKTGKCEYRKCDSKCAETSWDFEFEGEAYMRNRECCNSNFCNGTARRTQRLSPLAWITGVVALLLAQAYVREQQAG 153
            +VA VA  P   A+YPQDAL+CLAS KEPEG LICPEHRNGYCVKE S LA+EDCGRTTYFGDKWN +TGKCEYRKC++ C E+SWDFEFEGEAY RNR CC+ N+CNG +RR  R    AW++GVVALLL   Y+RE+QAG
Sbjct:    1 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNGISRRFSRAGMSAWVSGVVALLLTLLYLREEQAG 142
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BLAST of mRNA_C-linearis_contig9.16707.1 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.580e-34
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 0 
Query:   24 AKYPQDALQCLASRKEPEGHLICPEHRNGYCVKE---ESTLAKEDCGRTTYFGDKWNFKTGKCEYRKCDSKCAETSWDFEFEGEAYMRNRECCNSNFCNGTARRTQRLSPLAWITGVVALLLAQA 145
            + YPQ AL+C +S  EP G  ICPE  N +CVKE    + +AK +CGRT YFGD +N K+GKCE RKC + C E++W +EFEG  Y R R CCN  FCN   + T+  + L  +   VA+ LA A
Sbjct:    4 SNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCNAGGQ-TRPNTALLGVLVPVAMALAYA 127
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16707.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSN0_ECTSI3.940e-7171.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZS6_9STRA3.580e-3448.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..130
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 131..147
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 148..153
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.832

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:3211751..3213906 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16707.1mRNA_C-linearis_contig9.16707.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 3211751..3213906 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16707.1 ID=prot_C-linearis_contig9.16707.1|Name=mRNA_C-linearis_contig9.16707.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=154bp
GGGVTLSGLRWVLIVAVVAPTAYAKYPQDALQCLASRKEPEGHLICPEHR
NGYCVKEESTLAKEDCGRTTYFGDKWNFKTGKCEYRKCDSKCAETSWDFE
FEGEAYMRNRECCNSNFCNGTARRTQRLSPLAWITGVVALLLAQAYVREQ
QAG*
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