prot_C-linearis_contig9.16663.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16663.1
Unique Nameprot_C-linearis_contig9.16663.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length251
Homology
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BLAST of mRNA_C-linearis_contig9.16663.1 vs. uniprot
Match: D7FWS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS8_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 5.550e-40
Identity = 78/114 (68.42%), Postives = 88/114 (77.19%), Query Frame = 0 
Query:   30 LEADKRRRAARKAGDLAASKKFHAEKGRPRGDAKMDLFVRLLDVVLKVEPWNSARHMRVGEAWEESRRQIPEYVKERVRTEPRLLAQQQVSRLTEQLVDPTAKTPWKYYLEVNR 143
            +EADKRRRAARKA  L AS+K  AE  RPR D KM L +RLLD VL+VEPWN ARH +V EAWEE  R++P Y+KE  RTEPRLL QQQV RL +QL+DPTAKTPWK Y EV R
Sbjct:   18 IEADKRRRAARKAKGLEASRKARAEMRRPRRDEKMALLLRLLDAVLEVEPWNLARHTKVSEAWEECGRRVPGYLKEGARTEPRLLVQQQVFRLGDQLIDPTAKTPWKSYPEVKR 131
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BLAST of mRNA_C-linearis_contig9.16663.1 vs. uniprot
Match: A0A6H5J7K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.700e-18
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0 
Query:  116 QQQVSRLTEQLVDPTAKTPWKYYLEVNRRVEEVAAKPAATRRYRDKFGLYQQQGHEKTGPNKSNLALVETAHTSPEQPTTAQQRQ 200
            Q+ V+R+  QL DPT KT WK Y EV RRVE+V A  A TRRYRDKFG  QQ G     P KSN+A +ETAH SPEQP T+ QRQ
Sbjct:    2 QKHVTRMGRQLKDPTVKTTWKTYPEVMRRVEDVVASMAPTRRYRDKFGPQQQHGV--VEPKKSNVATLETAHDSPEQPATSLQRQ 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16663.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWS8_ECTSI5.550e-4068.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7K2_9PHAE1.700e-1861.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2534368..2538706 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16663.1mRNA_C-linearis_contig9.16663.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2532822..2538904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16663.1 ID=prot_C-linearis_contig9.16663.1|Name=mRNA_C-linearis_contig9.16663.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp
MDVGKGEQKRARRQWAIEAGNRNVDIKASLEADKRRRAARKAGDLAASKK
FHAEKGRPRGDAKMDLFVRLLDVVLKVEPWNSARHMRVGEAWEESRRQIP
EYVKERVRTEPRLLAQQQVSRLTEQLVDPTAKTPWKYYLEVNRRVEEVAA
KPAATRRYRDKFGLYQQQGHEKTGPNKSNLALVETAHTSPEQPTTAQQRQ
QRGHEKPGESSMLRLALSLLLSALDRVSASSAIQSTVSVGAMAHLCDRFS
*
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