prot_C-linearis_contig9.16640.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16640.1
Unique Nameprot_C-linearis_contig9.16640.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length555
Homology
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Match: A0A6H5JE62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE62_9PHAE)

HSP 1 Score: 531 bits (1368), Expect = 5.810e-182
Identity = 340/564 (60.28%), Postives = 379/564 (67.20%), Query Frame = 0
Query:    2 PAAGSRRAR-HSCSAVIVVCSILAAAAPCVVGFQVAAPPTSCSSSSGERGASGLRVAR-RIHQARQRAPAAGTPLHEEVDRRLRRWELALLAEREDGADGGGQEQQVSPPTDVQGAPAAAAAEAAMPVREAAPRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCSKRLSLLHRKLRQVKSLQAQQARDPDSLDAAQRVKLGRKQNLATEIAELEALRRDLRVREWERGSTSSAPPNTKEKKSRLPPGPFAGVNANAAGDDRRQQEGTNESEEDEGAEYTRDGLRLASPKRPVQPPKPAANKANEAEPTGGQQAGPS--------SLGDADLFADGPVGDVSAMADLIKASLDGQEDDIDAEGGGDGGFDWEEGYEDMEGQVAXXXXXXXXXXXXRMSPSEAAASGGGAARGAEGGQEPVLPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGEVAKDPGIKVDLLTDIIVANGVAVTFPGKIDNSDETRKPRDDVGKRTGPIPKAEKNTWKQKTKYRWSMDDGLLAKRTRRAANAKSFEKKRRSGGG-YDDW 554
            P AG  RAR H C A + +C+ L   +P   GF  AAP TS SS    R     R+A  R HQAR+R  ++   +  E   R R W   LLAE  DG DG G EQ    P +V+ A  A    +A P+   APRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLC KRLSLLHRKLRQVKSLQAQQAR PDSLD AQRVKLGRKQ L  EI+ELEALRRDLR +EWE    S+ P   + KKSRLPPGPFA  NA   G D RQ +     EED+GAEYTRDGLRLASPKR +                                SLGDADLF+DG  G V AM  LIK S+DGQ+ + +    GDGGF+WEEG+ED                                A G+  G+E   PMVEA AGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNG VA+DPGIKVDLLTDI+VANGVAVTFPGKIDNSDETR+PR+D GKRTGPIPKAEKNTWKQKTKYRW MDDGLLAKRTRRAANAK+F+KKR++GGG +D+W
Sbjct:    9 PKAGVTRARRHPCVAFVALCACLIWRSPSACGFHFAAPRTS-SSGHQRRATLPPRLALGRPHQARRRRLSSACAISREGGARRREW--LLLAEHVDG-DGHGPEQPEPHPAEVRRA--AGTVTSAPPL---APRRYVGDGAGMADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARAPDSLDDAQRVKLGRKQTLLAEISELEALRRDLRQKEWESDGASAGP--KENKKSRLPPGPFAAANAAGGGHDTRQHQ----PEEDDGAEYTRDGLRLASPKRRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGDADLFSDGGGGGVLAMEALIKPSMDGQDWEKEE---GDGGFNWEEGFED--------------------------------AGGSSEGREEARPMVEALAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGKIDNSDETRRPREDAGKRTGPIPKAEKNTWKQKTKYRWGMDDGLLAKRTRRAANAKAFDKKRQTGGGGFDNW 522          
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Match: D7FYC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC7_ECTSI)

HSP 1 Score: 402 bits (1033), Expect = 4.630e-134
Identity = 243/369 (65.85%), Postives = 262/369 (71.00%), Query Frame = 0
Query:  142 MADEGGVGGPKGDGRGKEWTVDLCSKRLSLLHRKLRQVKSLQAQQARDPDSLDAAQRVKLGRKQNLATEIAELEALRRDLRVREWERGSTSSAPPNTKEKKSRLPPGPFAGVNANAAGDDRRQQEGTNESEEDEGAEYTRDGLRLASPKRPVQPPKPAANKAN---------EAEPTGGQQAGPS-SLGDADLFADGPVGDVSAMADLIKASLDGQEDDIDAEGGGDGGFDWEEGYEDMEGQVAXXXXXXXXXXXXRMSPSEAAASGGGAARGAEGGQEPVLPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGEVAKDPGIKVDLLTDIIVANGVAVTFPGKIDNSDETRKPRDDVGK 500
            MADEGGVGGPKGDGRGKEWTVDLC KRLSLLHRKLRQVKSLQAQQARDPDSLD AQRVKLGRKQ L TEI+ELEALRRDLR +EWE    S+ P   KEKKSRLPPGPFA  NA   G D RQ +     EED+GAEYTRDGLRLASPKR VQ                    A   G   A PS SLGDADLF+DG  G VSAM  LIK+S+DGQ+ + +    GDGGF+WEEG+ED                                A G+  G+E   PMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNG VA+DPGIKVDLLTDI+VANGVAVTFPG IDNSDETR+PR+D GK
Sbjct:    1 MADEGGVGGPKGDGRGKEWTVDLCCKRLSLLHRKLRQVKSLQAQQARDPDSLDDAQRVKLGRKQTLLTEISELEALRRDLRQKEWESDGASAGP---KEKKSRLPPGPFAAANAAGGGHDTRQHQ----LEEDDGAEYTRDGLRLASPKRQVQXXXXXXXXXXXXXXXXSRPSAGTPGAAAAVPSPSLGDADLFSDGDGGGVSAMEALIKSSMDGQDWEKEE---GDGGFNWEEGFED--------------------------------AGGSSEGREEARPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGVVARDPGIKVDLLTDIVVANGVAVTFPGTIDNSDETRRPREDAGK 327          
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Match: A0A835YSP6_9STRA (S4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSP6_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.910e-24
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 0
Query:  422 GYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGEVAKDPGIKVDLLTDIIVANGVAVTFPGKIDNS------DETRKPRDDVGKRTGPIPKAEK-NTWKQKTKYRWSMDDGLLAKRTR 533
            G PK+L  ++S+CRVS + TCE+LV +GRVTVNGEV  +   KVD+L D I+ANG  V  P K DN+      DE         KRTGP+PK+EK  TWKQ TKY W +D GL+A++ R
Sbjct:  166 GLPKKLGTVLSYCRVSTRETCEMLVAIGRVTVNGEVVTNADKKVDILNDEIIANGARVEIPDKFDNTFSAPPVDEGEARPRGGKKRTGPLPKSEKPKTWKQLTKYTWKVDGGLMARKVR 284          
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Match: A0A4D9D3K9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3K9_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.490e-7
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0
Query:  421 GGYPKRLAGLMSFCRVSDKATCEILVEMGRVTVNGEVAKDPGIKVDLLTDIIVANGVAVTFP 482
            G  P+ +  L+ +CR+SDKATCEIL+E+G+V VNG V  DP   VDL+ D I  +G  VT P
Sbjct:  175 GRIPRTILKLLVYCRLSDKATCEILLELGKVKVNGVVCDDPVALVDLVKDKIEFDGEPVTLP 236          
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Match: A0A0G4HKE4_9ALVE (SAP domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKE4_9ALVE)

HSP 1 Score: 59.3 bits (142), Expect = 1.860e-5
Identity = 25/62 (40.32%), Postives = 39/62 (62.90%), Query Frame = 0
Query:  424 PKRLAGLMSFCRVSDKATCEILVEMGRVTVNGEVAKDPGIKVDLLTDIIVANGVAVTFPGKI 485
            PK+L   +++CR+SD   C +L+EMG V+VNG++ K P   V+L+ D IV     V  P ++
Sbjct: 1206 PKKLGTALTYCRISDSKGCRLLIEMGLVSVNGQIVKSPSTPVNLMRDKIVVKDEPVELPSRL 1267          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16640.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JE62_9PHAE5.810e-18260.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYC7_ECTSI4.630e-13465.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSP6_9STRA3.910e-2451.26S4 domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9D3K9_9STRA1.490e-751.61Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4HKE4_9ALVE1.860e-540.32SAP domain-containing protein n=1 Tax=Chromera vel... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 204..224
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..554
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..32
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..32
score: 0.726
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 426..476
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 424..480
e-value: 8.1E-7
score: 30.3
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 425..500
score: 9.88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2264447..2268857 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16640.1mRNA_C-linearis_contig9.16640.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2263861..2268873 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16640.1 ID=prot_C-linearis_contig9.16640.1|Name=mRNA_C-linearis_contig9.16640.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=555bp
MPAAGSRRARHSCSAVIVVCSILAAAAPCVVGFQVAAPPTSCSSSSGERG
ASGLRVARRIHQARQRAPAAGTPLHEEVDRRLRRWELALLAEREDGADGG
GQEQQVSPPTDVQGAPAAAAAEAAMPVREAAPRRYVGDGAGMADEGGVGG
PKGDGRGKEWTVDLCSKRLSLLHRKLRQVKSLQAQQARDPDSLDAAQRVK
LGRKQNLATEIAELEALRRDLRVREWERGSTSSAPPNTKEKKSRLPPGPF
AGVNANAAGDDRRQQEGTNESEEDEGAEYTRDGLRLASPKRPVQPPKPAA
NKANEAEPTGGQQAGPSSLGDADLFADGPVGDVSAMADLIKASLDGQEDD
IDAEGGGDGGFDWEEGYEDMEGQVAAATAAATAAAVARMSPSEAAASGGG
AARGAEGGQEPVLPMVEAPAGGYPKRLAGLMSFCRVSDKATCEILVEMGR
VTVNGEVAKDPGIKVDLLTDIIVANGVAVTFPGKIDNSDETRKPRDDVGK
RTGPIPKAEKNTWKQKTKYRWSMDDGLLAKRTRRAANAKSFEKKRRSGGG
YDDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036986S4_RNA-bd_sf
IPR002942S4_RNA-bd