prot_C-linearis_contig9.16634.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16634.1
Unique Nameprot_C-linearis_contig9.16634.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length407
Homology
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BLAST of mRNA_C-linearis_contig9.16634.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 5.580e-75
Identity = 238/401 (59.35%), Postives = 257/401 (64.09%), Query Frame = 0 
Query:    1 MAHLYHHPAPS--VVDDEGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDNSRTFDIRLGGEARVPVSRELILALAAKKKQLLGLCESTLRTPRSVANQNASGAAAHATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMQSAGSAAGSGTLPIGRGGDAPATXXXXXXXXX-----VAGAAEDAAPAAVASPSV--PAIVVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------RSAATAPTFVPAATAAASWSRVPAARDPAGATTLFVRKVDMRVDRDDLIKHFSRFGQVLSVSMNPTRGYAFVDLDSHAAVLRAVSAANHTVGHRALQVEVKKEP 378
            M+    HPAP+  VVDD GEAFARAVFCRFLRQATISRDIDDVIEHMHIVND+S+TF IRLGG+ARVPVSRELILALAAKKK+LL LCES LRTPRS+      G   H                                    XXXXXXXXXXXXXXXXXXXXXXXXXX MQS+  AAGS ++           XXXXXXXXX     V  A  D+A     SP+V  P  VVA                       XXXXXXXXXXXXXXXXXXXXXXXX              R AA AP FVP A AAA W +    RDPAG TTLFVRK+DM+VDR+D+IKHFS FGQVLSVSMNP+RGYAFVDLDSH AVLRAV  A HTVG + LQVEVKKEP
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSI-----RGGGGHTVTGANATAAGTPTGGGRPGLSSSLQHYRQQGNPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXMQSSAMAAGSASVXXXXXXXXXXXXXXXXXXXXXXLCSVPAAMGDSATGGGVSPAVVPPLGVVARHQQGEGVAAAAGPDPMVVEGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTRVAAAAPAFVPTA-AAAGWRQ----RDPAGPTTLFVRKIDMKVDREDVIKHFSIFGQVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 391
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BLAST of mRNA_C-linearis_contig9.16634.1 vs. uniprot
Match: A0A6H5L5V4_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5V4_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.510e-32
Identity = 73/98 (74.49%), Postives = 81/98 (82.65%), Query Frame = 0 
Query:  281 PTFVPAATAAASWSRVPAARDPAGATTLFVRKVDMRVDRDDLIKHFSRFGQVLSVSMNPTRGYAFVDLDSHAAVLRAVSAANHTVGHRALQVEVKKEP 378
            P FVP A AAA W +    RDPAG TTLFVRK+DM+VDR+D+IKHFS FG+VLSVSMNP+RGYAFVDLDSH AVLRAV  A HTVG + LQVEVKKEP
Sbjct:  418 PAFVPTA-AAAGWRQ----RDPAGPTTLFVRKIDMKVDREDVIKHFSSFGKVLSVSMNPSRGYAFVDLDSHDAVLRAVRTAEHTVGRKTLQVEVKKEP 510
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BLAST of mRNA_C-linearis_contig9.16634.1 vs. uniprot
Match: D7FJI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI2_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.550e-13
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 0 
Query:  305 ATTLFVRKVDMRVDRDDLIKHFSRFGQVLSVSMNPTRGYAFVDLDSHAAVLRAVSAANHTVGHRALQVEVKKEP 378
            AT+LFVRKVDM +DRD++I HFS +G+V  +SMNPTRGYAF+D  ++  V  A+S   H V  + L VE +  P
Sbjct:  445 ATSLFVRKVDMTIDRDEMIAHFSAYGEVTGISMNPTRGYAFIDYRTNECVQIALSTKEHYVNRKLLVVEERHSP 518
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSS4_ECTSI5.580e-7559.35Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5V4_9PHAE1.510e-3274.49RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJI2_ECTSI1.550e-1352.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 307..373
e-value: 1.7E-14
score: 64.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 308..364
e-value: 7.9E-9
score: 35.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 306..377
score: 13.26
NoneNo IPR availableGENE3D1.20.120.330coord: 28..134
e-value: 3.8E-5
score: 25.3
NoneNo IPR availablePANTHERPTHR10352EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Gcoord: 249..396
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 245..395
e-value: 5.2E-20
score: 73.7
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 288..403

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:2180911..2185542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16634.1mRNA_C-linearis_contig9.16634.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 2178933..2186496 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16634.1 ID=prot_C-linearis_contig9.16634.1|Name=mRNA_C-linearis_contig9.16634.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=407bp
MAHLYHHPAPSVVDDEGEAFARAVFCRFLRQATISRDIDDVIEHMHIVND
NSRTFDIRLGGEARVPVSRELILALAAKKKQLLGLCESTLRTPRSVANQN
ASGAAAHATGGGGGGGGGGGGQGLSSSLQHYQQQGGGAPNNGQDPNHTSA
SPPSTPPQAVVFPPAAALAAMQSAGSAAGSGTLPIGRGGDAPATAAAAGA
GAGVAGAAEDAAPAAVASPSVPAIVVAAEGGEDGGAGAGSDGDGGVEEQQ
RAPPEQQQQQQQQQSASPPPPAASRSAATAPTFVPAATAAASWSRVPAAR
DPAGATTLFVRKVDMRVDRDDLIKHFSRFGQVLSVSMNPTRGYAFVDLDS
HAAVLRAVSAANHTVGHRALQVEVKKEPPASKRSSSSSSSNNNNSNNSNL
RHGRSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf