prot_C-linearis_contig9.16584.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16584.1
Unique Nameprot_C-linearis_contig9.16584.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length245
Homology
[Close]
BLAST of mRNA_C-linearis_contig9.16584.1 vs. uniprot
Match: D8LSJ5_ECTSI (Erf4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ5_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 3.680e-71
Identity = 112/157 (71.34%), Postives = 124/157 (78.98%), Query Frame = 0 
Query:    1 MAIIQAQEPGSLGVIRLEPTGIKLGATAGISSSYDEGYPPELEGWMAKEEWLECIGRINRRAKSTPTAETQGCSLALMDRFPCGMCRLQAYCCCPCTLGLSLLSVRRQAKEVERGVGEVISSVNQNLEARRRSVRFGFHRGWCRAWVQVEYGPAISA 157
            MA IQ  E G LGVIRLEP GIKLGAT GISS+YD+ YPPEL+GWM  EEW ECIGRINR               ALMDRFPCG+CRLQAYC CPCTLGLSLLS+R++AKE+ERGVGEV+ +VNQNLEARRRSVRFGFHR +C AWVQVEYG  + A
Sbjct:    1 MAAIQEHEAGVLGVIRLEPIGIKLGAT-GISSAYDDQYPPELDGWMTTEEWFECIGRINR---------------ALMDRFPCGLCRLQAYCFCPCTLGLSLLSMRKEAKEIERGVGEVVKTVNQNLEARRRSVRFGFHRTFCSAWVQVEYGSKVGA 141
[Close]
BLAST of mRNA_C-linearis_contig9.16584.1 vs. uniprot
Match: A0A225VIN1_9STRA (Golgin subfamily A protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VIN1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 7.430e-11
Identity = 38/139 (27.34%), Postives = 69/139 (49.64%), Query Frame = 0 
Query:   13 GVIRLEPTGIKLGATAGISSSYDEGYPPELEGWMAKEEWLECIGRINRRAKSTPTAETQGCSLALMDRFPCGMCRLQAYCCCPCTLGLSLLSVRRQAKEVERGVGEVISSVNQNLEARRRSVRFGFHRGWCRAWVQVEY 151
            G +RL PT ++     G++ +Y++ +P EL   + + ++   I +IN                 + D +PC +C L  Y CCPCTLGLSL       ++ E+ V  +++ +N+ +   R  V +   R   ++W+Q+ Y
Sbjct:   28 GEVRLYPTRMRF--VTGVARAYEDDFPFELSHLVKETDFEIAINQINN---------------TMQDYWPCFLCILCGYGCCPCTLGLSLFCPNFCIRDAEQYVRALLTRINKRVCFERAGVEWQLERSCGKSWIQIAY 149
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16584.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ5_ECTSI3.680e-7171.34Erf4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A225VIN1_9STRA7.430e-1127.34Golgin subfamily A protein n=1 Tax=Phytophthora me... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1626218..1628353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16584.1mRNA_C-linearis_contig9.16584.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1626195..1629026 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16584.1 ID=prot_C-linearis_contig9.16584.1|Name=mRNA_C-linearis_contig9.16584.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=245bp
MAIIQAQEPGSLGVIRLEPTGIKLGATAGISSSYDEGYPPELEGWMAKEE
WLECIGRINRRAKSTPTAETQGCSLALMDRFPCGMCRLQAYCCCPCTLGL
SLLSVRRQAKEVERGVGEVISSVNQNLEARRRSVRFGFHRGWCRAWVQVE
YGPAISASYSPIASKAPLSSYSAASVSTGASSGNNRHNLEGGRYGSSGEQ
PGNESFDRRRKETTTVKAMSGATQPLDEALLERDYTAAASPSAV*
back to top