prot_C-linearis_contig9.16567.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16567.1
Unique Nameprot_C-linearis_contig9.16567.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length266
Homology
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BLAST of mRNA_C-linearis_contig9.16567.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.660e-9
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 0 
Query:   18 MRHPIRDGILTFFLAYFIVISYFQSVHHRRAIEV 51
            MRHP+RDGIL FF+AYFIVISYFQSVHHRRAIE+
Sbjct:    1 MRHPVRDGILIFFMAYFIVISYFQSVHHRRAIEL 34
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L164_9PHAE2.660e-988.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..266
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..40
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1442928..1444828 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16567.1mRNA_C-linearis_contig9.16567.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1442926..1444828 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16567.1 ID=prot_C-linearis_contig9.16567.1|Name=mRNA_C-linearis_contig9.16567.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp
PDAGRFRQRAGERKRKRMRHPIRDGILTFFLAYFIVISYFQSVHHRRAIE
VTASKKAKAATTTAPEVQQLPASPGDASSSSAGAITKQQQQDPTVKERIT
SSASPQEHDNAAAAAAPLDSTAKPRRSSTTSSAEQEPALASSNGEVDTAA
AVAAATAADVSAEKAGNRYSSSEQGEGSTGNGGEAEGLRPLVDEEERQEE
EGWGLRPLLAEEAAAGSGTGEGSSDGVAAKHGWGVNAVGSNSSGGSEQPS
RQAIPARDEADEIKDA
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