prot_C-linearis_contig9.16561.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16561.1
Unique Nameprot_C-linearis_contig9.16561.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length423
Homology
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BLAST of mRNA_C-linearis_contig9.16561.1 vs. uniprot
Match: A0A6H5L054_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L054_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.400e-49
Identity = 81/118 (68.64%), Postives = 95/118 (80.51%), Query Frame = 0 
Query:   49 RTDGADINDDAVYTLETIQVFKGEEPGPNEYDEVGGTFEMTTGGNSALCGVFLSTDG-TEYLIGMSRLSDGVLYAAGICGLIQEWNEEDRATLEEGCDDYDPCDGECGEFQECVRSYD 165
            R DG DIN D +YTLETI+VFK E+PGPNEYDE G  FE+TT GNS LCGV++  DG TEYLI ++R SDG L AAGICG+ +EW+E DRA LEEGCDDYDPC+GECGEFQ C+ + D
Sbjct:    9 RVDGEDINSDDIYTLETIEVFKAEDPGPNEYDEAGSQFEITTAGNSGLCGVYMDADGSTEYLIDLNRQSDGSLRAAGICGVFREWDEADRAELEEGCDDYDPCNGECGEFQVCLCNKD 126
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BLAST of mRNA_C-linearis_contig9.16561.1 vs. uniprot
Match: D7FR36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR36_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.460e-41
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 0 
Query:  101 LSTDG-TEYLIGMSRLSDGVLYAAGICGLIQEWNEEDRATLEEGCDDYDPCDGECGEFQECVRSYDYYAEDSYYCQDTCDPSPCLDGEACTLVYPLCSGGG-CVAEASCGEAQ 211
            +  DG TEYLI ++R SDG L AAGICG+ +EW+E DR  LEEGCDDYDPC+GECGEFQ C RSY  Y++ SY+C DTCDPSPC +GE CTL YP+CS    C   A CGE  
Sbjct:    1 MDADGSTEYLIDLNRQSDGSLRAAGICGVFREWDEADRVELEEGCDDYDPCNGECGEFQVCSRSYFSYSDASYFCSDTCDPSPCSEGEECTLTYPVCSASEVCGPVADCGEGD 113
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BLAST of mRNA_C-linearis_contig9.16561.1 vs. uniprot
Match: D7G2B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B7_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 4.800e-9
Identity = 40/84 (47.62%), Postives = 47/84 (55.95%), Query Frame = 0 
Query:  137 RATLEEGCDDYDPCDGECGEFQECVRSYDYYAEDSYYCQDTCDPSPCLDGEACTLVYPLCSGGGCVAEASCGEAQSPSPSLPPA 220
            RA + EG      C+G C EFQEC+     +AED YYC   CDPSPC DGE CTLV   C+ G     + CG+    SP LP A
Sbjct:  264 RAAIGEG----GLCEGRCSEFQECLFYSGNFAEDQYYCSAVCDPSPCGDGEECTLVPASCAPG-----SICGKRSICSP-LPAA 337
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L054_9PHAE2.400e-4968.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR36_ECTSI1.460e-4162.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2B7_ECTSI4.800e-947.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001820Protease inhibitor I35 (TIMP)SMARTSM00206NTR_2coord: 23..180
e-value: 0.0031
score: -58.2
NoneNo IPR availableGENE3D2.40.50.120coord: 23..145
e-value: 1.8E-9
score: 39.7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..422
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..25
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..25
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.9
IPR001134Netrin domainPROSITEPS50189NTRcoord: 23..150
score: 8.59
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 23..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:1377331..1382184 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16561.1mRNA_C-linearis_contig9.16561.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 1375688..1382264 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16561.1 ID=prot_C-linearis_contig9.16561.1|Name=mRNA_C-linearis_contig9.16561.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=423bp
MSTFKYLLAAAAVLCLLPQTSACSCAPPGTLCDSILRTEVVLHVKALERT
DGADINDDAVYTLETIQVFKGEEPGPNEYDEVGGTFEMTTGGNSALCGVF
LSTDGTEYLIGMSRLSDGVLYAAGICGLIQEWNEEDRATLEEGCDDYDPC
DGECGEFQECVRSYDYYAEDSYYCQDTCDPSPCLDGEACTLVYPLCSGGG
CVAEASCGEAQSPSPSLPPAGTFPPGGFVDSARTLPPGATIDSTTSRSYV
ETLAPSGGSLGPPIEEDSRDADEPATPPPAPGTVGPPSSTPQTPAPTRDE
RSPPAAAPTWPPRGDGPTAPDSSESPAPGRDSPTAAASPTGSDGDGSPGG
STPTTAAPSMAPASGAGGASPLPEVSSAPTVSANAEGDDTGAAPAVRSSG
GFVAATAAAVVIATAAAACASL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001820TIMP
IPR001134Netrin_domain
IPR008993TIMP-like_OB-fold