prot_C-linearis_contig9.16514.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig9.16514.1
Unique Nameprot_C-linearis_contig9.16514.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length304
Homology
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BLAST of mRNA_C-linearis_contig9.16514.1 vs. uniprot
Match: D7FR40_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR40_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 1.550e-113
Identity = 203/303 (67.00%), Postives = 224/303 (73.93%), Query Frame = 0 
Query:    1 MAFRNSRSVRLAALACLGFLSTAPVARAAGRDVGFGGTTCGFVAPTSSRFHHQPRQSGSVRVSSRSTAAASAARMTVSEGVSEGADVATSYSDLPADWRAPLPPRESRPKKGATDEDGEGRQGGXXAEGEDMLPGSVADGLRTPAEVLQQATRVTPSNKAGGRRLAQAPPGVESFQTENQRRRTLPLSQLKRAKPKKRVKKEEEEGEFRPLVLKTDRESVLRGEDYWIDYGEVDKKKARKEARAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAIVAIAGFVRINPGILDDPSIITFPNEL 303
            MA R+SR  RLA+LA LGF  +AP+AR  GRDVG     CGFV           R   SV          SA RM +SE        AT YS+LPADWRAPLPPRE +PKKG T E+ EG +G       + + G+  DGLRTPAEVLQ+ATRVTP    G  R+AQAPPG+ES QTENQRRR LPLS+LKR KPKKR  KEEEEGE RPLVLKTDRESVLRGEDYWIDY EVD+KKA +EA+AKAPAPDQFAQSKMKAEIVNPYKQNWIL IS+AIVAIAGFVRINPGILDDP+IITFPNEL
Sbjct:    1 MASRSSRRSRLASLAFLGF--SAPLAR--GRDVGVVAGACGFVVAPGGGAAMLQRSRRSVXXXXXXXXXXSAPRMALSEEAE-----ATPYSELPADWRAPLPPREFKPKKGETQEE-EGVEG-------EGVGGAEGDGLRTPAEVLQEATRVTPKRMQG--RMAQAPPGLESLQTENQRRRALPLSKLKRVKPKKRAAKEEEEGEIRPLVLKTDRESVLRGEDYWIDYREVDRKKAIREAKAKAPAPDQFAQSKMKAEIVNPYKQNWILAISLAIVAIAGFVRINPGILDDPAIITFPNEL 284
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BLAST of mRNA_C-linearis_contig9.16514.1 vs. uniprot
Match: A0A835YJZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJZ1_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.050e-26
Identity = 69/136 (50.74%), Postives = 86/136 (63.24%), Query Frame = 0 
Query:  169 PPGVESFQTENQRRRTLPLSQLKRAKPKKRVKKEEEEGEFRPLVLKTDRE-SVLRGEDYWIDYGEVDKKKARKEARAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAIVAIAGFVRINPGILDDPSIITFPNEL 303
            PP V  FQ+++Q+RR  PLSQLKR +  K+V  +E EGE RPLV K     SVL+GEDYWID   V++   +       P  DQF   K++ EIV+PYK N IL I + I AI  FV++NPGILD   II FP EL
Sbjct:   53 PPDVSDFQSDSQKRRNRPLSQLKRQRKVKQV--QEPEGELRPLVKKERNSMSVLQGEDYWIDLSLVNEDNDK--PVKPTPTEDQFKDEKLREEIVSPYKNNTILGIILGITAIIAFVQLNPGILDSYPIINFPEEL 184
[Close]
BLAST of mRNA_C-linearis_contig9.16514.1 vs. uniprot
Match: K0S2D5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2D5_THAOC)

HSP 1 Score: 65.9 bits (159), Expect = 8.750e-10
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0 
Query:  217 RESVLRGEDYWIDYGEVDKKKARKEARAKAPAPDQFAQSKMKAEIVNPYKQNWILVISIAIVAIAGFVRINPGILDDPSI 296
            R++V +G DYWID  E++K KAR+   AK     + +Q K+KAEIV PYKQNWI   S+ IV +A   +  P +L  P I
Sbjct:   45 RDAVEQGLDYWIDEEEINKSKARESRPAKTSKRSRMSQDKLKAEIVAPYKQNWIGYFSLTIVILATIGKQFPELLAIPII 124
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig9.16514.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FR40_ECTSI1.550e-11367.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJZ1_9STRA1.050e-2650.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K0S2D5_THAOC8.750e-1046.25Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..268
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 287..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 269..286
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..28
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.754
NoneNo IPR availableTMHMMTMhelixcoord: 269..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig9contigC-linearis_contig9:995373..999434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig9.16514.1mRNA_C-linearis_contig9.16514.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig9 995327..1000034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig9.16514.1 ID=prot_C-linearis_contig9.16514.1|Name=mRNA_C-linearis_contig9.16514.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=304bp
MAFRNSRSVRLAALACLGFLSTAPVARAAGRDVGFGGTTCGFVAPTSSRF
HHQPRQSGSVRVSSRSTAAASAARMTVSEGVSEGADVATSYSDLPADWRA
PLPPRESRPKKGATDEDGEGRQGGEGAEGEDMLPGSVADGLRTPAEVLQQ
ATRVTPSNKAGGRRLAQAPPGVESFQTENQRRRTLPLSQLKRAKPKKRVK
KEEEEGEFRPLVLKTDRESVLRGEDYWIDYGEVDKKKARKEARAKAPAPD
QFAQSKMKAEIVNPYKQNWILVISIAIVAIAGFVRINPGILDDPSIITFP
NEL*
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