prot_C-linearis_contig88.16385.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16385.1
Unique Nameprot_C-linearis_contig88.16385.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length642
Homology
BLAST of mRNA_C-linearis_contig88.16385.1 vs. uniprot
Match: D7G7J5_ECTSI (PAS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J5_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 1.760e-82
Identity = 265/680 (38.97%), Postives = 353/680 (51.91%), Query Frame = 0
Query:    1 RSRRPWRTLFERVLGSLPYGAVLSLTEASGNSSIGRGERESLKGDGSLAAVAAAGKVLWANEGFEKLAGVDAVDIIGQEICCLFDEGEREEGEGGEGEERGKLKRSLELGKNCMLWMAMAGRQDGVTDVLCLHQTVAVSSQLSDEGRYSVLMFFDTASILFKS---QEQGGRGWGGRDKGMDEGSVTQPDREERAVLDQEREDKHRESSRRQACHDLSKAMVILLSGG-DVDV-EGDLPEA--TSDRPFIDSRESENPISSGRDNSRNSPVVNETGRLEEKYAGRETRDIDYGAE-GEGDPEQRPSTLERPSLLGLSRELDGLSRDLQR---DELDGELLEARLASECGVVNEPRSDSVE-DLPLSDIPRTHGGGGQR--EEVGVEVEQHAFTRDKEQYQQHVPPTSPPHSAVDHD--AAEYSSGDESSAPPRVDLLLSPYRASTPARSTVSAEEQQV---------AGETIRSPHRDSSNGSTTIA-EKTLLTPATDSAVSGSGRSPAPTAKYDD-ATPPSTARNLRLSLDGYKDDFC-DDEDESA--YLAHPEAEGEGSVGKSFDATAGNNITXXXXXXXXXXXXXXXXXXXXKFEGMGNKSETFRGGDSGGVAGGFDDGGD-NEYAADGYASSASDGVYSGTAAGGLEADLHGGRYDG-------NNDTSWGGSPEG 642
            RSRRPWRTLFER LGSLPYGAVLSL   +G  ++            +  A AAAGKV+WA+EGFEKLAGVDA+D++GQE+  LF+ G  EE E  EGEE G+LKRSLE+G+ C LWM M  +QDG+T+VLC+HQ V V  QLS+EGRYSVL+FFDTAS+LF++   Q    +  GG  +G    S+    +           D+ RE  R++ C+ LS+AM  LL+   DVD+ +G L EA  + D       +SE    SG D S  + +V+   RL       E  D+  G + G G+     S  +RP L          S D+ R   +E  GE L   L  E G+V+E +  +   +  L+   +   G G R  ++           R  +Q+       SP  SA      AAEYSSGDESS  PR DLL SP R    A +TVS  E ++          G      H D SNG    + +++L +P++   V+GS  S   T + ++ A   +T    + S D Y+DDFC D+EDES    L+ PE E EG V    + ++ N I                       +  G   E   GG  G V GGFD  G   +   D Y+SS+SDGVYSGT AGGL+ +LHGG  DG       N++ +W GSPEG
Sbjct:    9 RSRRPWRTLFERTLGSLPYGAVLSLAGENGEENLP-----------ASTATAAAGKVVWASEGFEKLAGVDAIDVVGQEVGSLFEVGGTEEDE--EGEEAGELKRSLEIGQGCTLWMTMGEQQDGLTNVLCVHQPVTVPPQLSEEGRYSVLLFFDTASVLFENPPRQATEQQAEGGEVRGQQADSLYLKGK-----------DQDREQYRQRTCYSLSRAMATLLADNVDVDIADGLLKEACVSFDGNNDTGYQSETLTPSGDDKS--ARIVHGRRRLGSNDIEGEAGDVYLGGQRGSGEVRGPTSQEQRPLLQSKRSGTTYRSDDVSRYAAEERKGEYLRGDLLLESGIVDEQQHGASHIEGHLTSSGQLENGRGSRSGDDDXXXGRTSGNIRRIQQHXXXXXXXSPAFSAXTESGGAAEYSSGDESSTEPRDDLLTSPGREEATAAATVSPAEPKLFDGGDERIDGGSNSNVHHGDLSNGGGNSSFDRSLFSPSSRPPVAGSRISLDRTQESEEEAGTDATTMQRKGSDDPYEDDFCCDEEDESLPLSLSRPEQE-EGRVTVK-NISSDNTINHGP-------------------DNGGGWGEAVTGGHRG-VDGGFDVKGHWQDDKDDSYSSSSSDGVYSGTVAGGLKINLHGGGVDGVESERDDNDELTWEGSPEG 640          
BLAST of mRNA_C-linearis_contig88.16385.1 vs. uniprot
Match: A0A6H5KCS4_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCS4_9PHAE)

HSP 1 Score: 278 bits (712), Expect = 1.050e-80
Identity = 256/684 (37.43%), Postives = 354/684 (51.75%), Query Frame = 0
Query:    1 RSRRPWRTLFERVLGSLPYGAVLSLTEASGNSSIGRGERESLKGDGSLAAVAAAGKVLWANEGFEKLAGVDAVDIIGQEICCLFDEGEREEGEGGEGEERGKLKRSLELGKNCMLWMAMAGRQDGVTDVLCLHQTVAVSSQLSDEGRYSVLMFFDTASILFKS---QEQGGRGWGGRDKGMDEGSVTQPDREERAVLDQEREDKHRESSRRQACHDLSKAMVILLSGG-DVDV-EGDLPEATSDRPFIDSRESENPISSGRDNSRNSPVVNETGRLEEKYAGRETRDIDYGAEGEGDPEQRPSTLERPSLLGLSRE-LDGLSRDLQR---DELDGELLEARLASECGVVNEPR--SDSVEDLPLSDIPRTHGGGGQREEVGVEVEQHAF--TRDKEQYQQHVPPTSPPHSAVDHD--AAEYSSGDESSAPPRVDLLLSPYRASTPARSTVSAEE--------QQVAGETIRSPHRD--SSNGSTTIAEKTLLTPATDSAVSGSGRSPAPTAKYDDATPPSTARNLRL-SLDGYKDDFC-DDEDESAYLAHPE-AEGEGSV-GK--SFDATAGNNITXXXXXXXXXXXXXXXXXXXXKFEGMGNKSETFRGGDSGGVAGGFDDGG----DNEYAADGYASSASDGVYSGTAAGGLEADLHGGRYDG-------NNDTSWGGSPEG 642
            RSRRPWRTLFER LGSLPYGAVLSL   +G   I            +    AAAGKV+WA+EGFEKLAGVDA D++GQE+  LF+ G  EE +  EGEE G+LKRSLELG+ C LWM M  ++DG+T+VLC+HQ V V  QLS+EGRYSVL+FFDTAS+L ++   Q    +G GG   G    S+    +           D+ RE  R++ C+ LS+AM +LL+    VD+  G L EA       +  + ++   +   + R++ +V+E  RL  K  G E  D+  G +      + P++ E+ SLL   R      S D+ R   +E +G+ L   L  + G+V+E +  +  +ED  +      +G G +  +   E E       R  +Q++Q +P + P  SA      AAEYSSGDE+S  PR DLL SP R    A +T S  E        +++ GE   + H    S+ G  +  +++ L+P++   ++GS  S   T + ++     T    R  S D Y+DDFC D+EDES  L+ P  A+ EG V GK  S D T  N                                     G   GV  GFD  G    D +   D Y+SS+SD VYSGT AGGL+ +LHGG  DG       N++ +W GSPEG
Sbjct:   21 RSRRPWRTLFERTLGSLPYGAVLSLARENGEDDIQ-----------ASTTTAAAGKVVWASEGFEKLAGVDAFDVVGQEVGFLFEVGGNEEDD--EGEEAGELKRSLELGQGCTLWMTMGEQRDGLTNVLCVHQPVTVPPQLSEEGRYSVLLFFDTASVLLENPRRQATEEQGEGGEIGGKQADSLYLKGK-----------DQDREQYRQRTCYSLSRAMALLLADNVAVDIANGLLKEAYVSFEGNNDTDYQSETLTPSSDDRSARIVHEIRRLGSKEVGGEAGDVYLGGQRGNGEVRGPTSQEQRSLLQSKRSGTTYCSDDVSRYPTEEREGKYLRGDLLMDSGIVDEQQHGASHIEDQLICSGQPVNGRGSRSGDDDEEEEGRTSGNIRRIQQHRQQLPKSFPAFSAATESCGAAEYSSGDETSTEPRDDLLGSPGREGATAEATASPAEPKLFDGGDERIDGEFNNNVHHGGLSNGGGNSSFDRSFLSPSSRPPMAGSRISLDRTQESEEEAGTDTTTVQREGSDDPYEDDFCCDEEDESLSLSLPRPAQEEGRVTGKYISSDITINNGPVV---------------------------------GGHRGVDDGFDVKGHWQGDKD---DAYSSSSSDDVYSGTVAGGLQINLHGGGVDGVESERDDNDELTWEGSPEG 644          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7J5_ECTSI1.760e-8238.97PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KCS4_9PHAE1.050e-8037.43PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 24..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..642

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:714892..717282 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16385.1mRNA_C-linearis_contig88.16385.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 714892..717282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16385.1 ID=prot_C-linearis_contig88.16385.1|Name=mRNA_C-linearis_contig88.16385.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=642bp
RSRRPWRTLFERVLGSLPYGAVLSLTEASGNSSIGRGERESLKGDGSLAA
VAAAGKVLWANEGFEKLAGVDAVDIIGQEICCLFDEGEREEGEGGEGEER
GKLKRSLELGKNCMLWMAMAGRQDGVTDVLCLHQTVAVSSQLSDEGRYSV
LMFFDTASILFKSQEQGGRGWGGRDKGMDEGSVTQPDREERAVLDQERED
KHRESSRRQACHDLSKAMVILLSGGDVDVEGDLPEATSDRPFIDSRESEN
PISSGRDNSRNSPVVNETGRLEEKYAGRETRDIDYGAEGEGDPEQRPSTL
ERPSLLGLSRELDGLSRDLQRDELDGELLEARLASECGVVNEPRSDSVED
LPLSDIPRTHGGGGQREEVGVEVEQHAFTRDKEQYQQHVPPTSPPHSAVD
HDAAEYSSGDESSAPPRVDLLLSPYRASTPARSTVSAEEQQVAGETIRSP
HRDSSNGSTTIAEKTLLTPATDSAVSGSGRSPAPTAKYDDATPPSTARNL
RLSLDGYKDDFCDDEDESAYLAHPEAEGEGSVGKSFDATAGNNITTTTTT
TTNNNNNNNNNNNNNKFEGMGNKSETFRGGDSGGVAGGFDDGGDNEYAAD
GYASSASDGVYSGTAAGGLEADLHGGRYDGNNDTSWGGSPEG
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