prot_C-linearis_contig88.16352.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16352.1
Unique Nameprot_C-linearis_contig88.16352.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length586
Homology
BLAST of mRNA_C-linearis_contig88.16352.1 vs. uniprot
Match: D7FW11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW11_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 1.260e-84
Identity = 274/660 (41.52%), Postives = 344/660 (52.12%), Query Frame = 0
Query:    1 MERMSDKFRWEVQEVERIQKQVRARQHRIAQANLCACCAIMIQAAWRTHQAKTLARQRRGQKLGQMLVRWWRRGYRCLLNLDEVLPRPDHITNSMNIPHVSPKMPHTT-SCANSVKTRQNVAVIERFVRAAVSRRRRRAQKRLMASVKVQRAWRRYTLRMVLDRVVLATAATEMVIENILVELARRVYIEIKGAVIARAWKKSKRRLENKNRKGRSGRVFLTQGGASSPRRKPARAGGPRNGLTSDPSSTYSSRRSPSV----RGANKGKAGGATGFFSPALANIVSTATSXXXXXXXXXXDGERRVWSQSTDPPP------SPLPLCRN---APSKDDTSGF----RSLREKSEASATSETEG--DGRERPKPLEPSAPSLAARSPDEGVLRVGSSKSEGS--SXXXXXXXXXIIRRRIEDAVVDVALDRKPSLQSTGKDDVIVEKATAP-------------------QPRRPSGAKPSRRTSEGRSSRSKQHKLTPGGES--------GSHRPPSTTPDNSGKSL----------QLVAAGERGTVAGSVVVPDEAPSTTAVADTSQDSVSRSDPRGRGVSDRSLDGVGPRGDGADDDDDLGR--------------GDKVSSPVGGSEL--GEAKFSKEDYASDTFESVGELSLTQ 585
            ME+MSDKFRWEV+EV+RI+  VR RQ RIAQANL ACCAIMIQA WR +QAK LA  RRG KLGQ+L+RWWRR Y+ + +   +  R D  T       ++P +P T  S   + K RQ++ +++RFV   V R RR   ++ ++S +VQRAWRR+ LRM L R+VLATAATE VIEN+L+ELAR+VY+EIKGAVIARAWK+S+RR  +K+RKG++GRVF+TQGG SSPRRKPAR GG R G+TSDPSS Y  RRSPS     RG N+GK G A     PA          XXXXXXXXXX                     +PLP  R    +PS+D +S      RS R +S            DG      +  S  S A R P E V  V S KSE S  S          +  R+ED     A++       T  ++   E+A A                    QP RPSG KPS+  SEGR S S+ H +  GG S        G  R  + T +    +L            +AAGE  T AG V V   A   T   DT       + P   G+  R ++       G DDD                    +K+ + VG  E+  G  K   E+Y SD FES GELSLT+
Sbjct:    1 MEQMSDKFRWEVKEVKRIRNAVRRRQSRIAQANLRACCAIMIQATWRRYQAKLLAWARRGLKLGQILMRWWRRAYKSMWDSRHLPGRADKTTT------LNPLVPGTYFSTGQNFKVRQSLKIVKRFVSNNVQRHRRLKYEKQISSTRVQRAWRRWMLRMSLSRMVLATAATEEVIENVLMELARQVYVEIKGAVIARAWKQSRRRFGSKSRKGKNGRVFVTQGGGSSPRRKPARVGGSRTGVTSDPSSAYPPRRSPSAAPGNRGGNRGKNGPAVASPPPAFLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPLPSSRQKTVSPSEDGSSALYPHPRSRRARSXXXXXXXXXALRDGGAGGSKVPDS--SSANRPPFEAVPGVESPKSEMSCSSSYGVGDGGRDVFGRVEDDATTGAVEGSVVDGGTTLNEEAQEQANAXXXXXXXXXXXXSSSGKVVKQPMRPSGEKPSK-LSEGRRSYSRPHAIQVGGRSRLHSSGADGGSRTAAATKEVVASALAGSSAESNNGDPLAAGEATTAAGCVTVASGA---TGAEDT------EALPAAGGLGKREVNFEETVRLGGDDDGXXXXXXXXXXXXXXXXXXANKIPAAVGPDEIDAGSKKSKLEEYGSDVFESDGELSLTR 642          
BLAST of mRNA_C-linearis_contig88.16352.1 vs. uniprot
Match: A0A6H5JL57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL57_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 5.580e-79
Identity = 162/285 (56.84%), Postives = 196/285 (68.77%), Query Frame = 0
Query:    1 MERMSDKFRWEVQEVERIQKQVRARQHRIAQANLCACCAIMIQAAWRTHQAKTLARQRRGQKLGQMLVRWWRRGYRCLLNLDEVLPRPDHITNSMNIPHVSPKMPHTTSCANSVKTRQNVAVIERFVRAAVSRRRRRAQKRLMASVKVQRAWRRYTLRMVLDRVVLATAATEMVIENILVELARRVYIEIKGAVIARAWKKSKRRLENKNRKGRSGRVFLTQGGASSPRRKPARAGGPRNGLTSDPSSTYSSRRSPSV----RGANKGKAGGATGFFSPALANIV 281
            ME+MSDKFRWEV+EV+RI+ +VR RQ RIAQANL ACCAIMIQA WR +QAK LA  RRG KLGQ+L+RWWRR                                         K RQ++ +++RFV   V R RR   ++ ++S +VQRAWRR+ LRM L R+VLATAATE VI+N+LVELAR+VYIEIKGAVIARAWK+S+RR  NK+RKG++GRVF+TQGG SSPRRKPARAGG R G+TSDPSS Y  RRSPS     RG N+GK+G A  +  PA   +V
Sbjct:    1 MEQMSDKFRWEVKEVKRIRNEVRRRQRRIAQANLRACCAIMIQATWRRYQAKLLAWARRGSKLGQILMRWWRR----------------------------------------FKVRQSLKIVKRFVSNNVQRHRRLKYEKQISSTRVQRAWRRWMLRMSLSRMVLATAATEEVIQNVLVELARQVYIEIKGAVIARAWKQSRRRFGNKSRKGKNGRVFVTQGGGSSPRRKPARAGGSRTGVTSDPSSAYPPRRSPSAVPGNRGENRGKSGPAVAYPPPAFLGVV 245          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW11_ECTSI1.260e-8441.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL57_9PHAE5.580e-7956.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..46
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..585

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:379577..382456 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16352.1mRNA_C-linearis_contig88.16352.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 379577..382456 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16352.1 ID=prot_C-linearis_contig88.16352.1|Name=mRNA_C-linearis_contig88.16352.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=586bp
MERMSDKFRWEVQEVERIQKQVRARQHRIAQANLCACCAIMIQAAWRTHQ
AKTLARQRRGQKLGQMLVRWWRRGYRCLLNLDEVLPRPDHITNSMNIPHV
SPKMPHTTSCANSVKTRQNVAVIERFVRAAVSRRRRRAQKRLMASVKVQR
AWRRYTLRMVLDRVVLATAATEMVIENILVELARRVYIEIKGAVIARAWK
KSKRRLENKNRKGRSGRVFLTQGGASSPRRKPARAGGPRNGLTSDPSSTY
SSRRSPSVRGANKGKAGGATGFFSPALANIVSTATSTAAAAATTTADGER
RVWSQSTDPPPSPLPLCRNAPSKDDTSGFRSLREKSEASATSETEGDGRE
RPKPLEPSAPSLAARSPDEGVLRVGSSKSEGSSNSGGGGGGRIIRRRIED
AVVDVALDRKPSLQSTGKDDVIVEKATAPQPRRPSGAKPSRRTSEGRSSR
SKQHKLTPGGESGSHRPPSTTPDNSGKSLQLVAAGERGTVAGSVVVPDEA
PSTTAVADTSQDSVSRSDPRGRGVSDRSLDGVGPRGDGADDDDDLGRGDK
VSSPVGGSELGEAKFSKEDYASDTFESVGELSLTQ*
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