prot_C-linearis_contig88.16344.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16344.1
Unique Nameprot_C-linearis_contig88.16344.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length682
Homology
BLAST of mRNA_C-linearis_contig88.16344.1 vs. uniprot
Match: A0A6H5KSR4_9PHAE (GRIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR4_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 2.610e-102
Identity = 355/631 (56.26%), Postives = 395/631 (62.60%), Query Frame = 0
Query:    1 MASQKDKLRKAAARLRSLKEERDTANEKLASTSALLETSEKILADAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQESAARVYTLESELETERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-VDAANKGRDAAVASLETAEKE--TSKTRLKELFVKYKAVQAKHKAAQDGAEALKLEAQKVPGLENTSTELQSKVEELSSKLAAAEASVKDKEEEFSKTATEK----AVEKSAKEDLEVKVKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAFTVVLRVRYDGSTWCLLRSTQA-GSSGDGDADKA--DAAATPDKDNNSQEVGQKQKQQWATEDKARAWIAGGSSVSDTALWAQVVQDVFEEKATAAAAEIRVVTAGAQSTRQELEALSSEFAKYKARAHTALKKATSSGADDKRKDELIAALQSEQTRLSNLLAETTSSLESQLSDERGVFKAREDDLEA---ASAQLETAQEQVRELQGSLRDQERKVAQLQEAEDGHSEEMSALREARGDLKAQLKAAKAQAYESSSITQRLQEELEELSKEK 618
            +A QKDKL+KAAARLRSLKEERD A EK+AST+ALLETSEK LADA             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                               +ESAAR   LE++L  ER      XXXXXXXXXXXXXXXXXXXXXXXXXXXX       VDAAN                  +SKTRLK+LF KYKAVQ                                                 ++E+EF+K   EK    A EKSAKEDLEVKVKRLK+LLSK QKSSHSKDADLAALKAP PPPKAFTV LRVR++GSTWC +++TQ   +S DG  D A  +A+A P  D          KQQW TEDKAR W+AGGSS SD ALW +VVQ+ FEE+A AAAAE RV   GA +TRQELEALS+EFAKYKARAHTALKKATS+GA+DKRKDELIAALQSE  RL+  +                              ASA+LETAQEQVR LQGSLRDQERK+AQLQEAE+GHSEEMSALREAR +LK+QLKAAKAQA ESS I QRLQEELEE++K +
Sbjct:  862 VAGQKDKLKKAAARLRSLKEERDAATEKVASTAALLETSEKNLADAEARSRSLEEAIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCRLREAEDLLRSTSEESMVLRRGLEERCQRL-------------EESAARAPALEADLAAERSGRRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGALQGQVDAANXXXXXXXXXXXXXXXXXXSSKTRLKDLFAKYKAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREDEFAKMVGEKEQVAAAEKSAKEDLEVKVKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQQPATSEDGGKDTAPAEASAAPKPD----------KQQWVTEDKARTWLAGGSSSSDVALWPKVVQEAFEERAVAAAAEARVAAEGALATRQELEALSTEFAKYKARAHTALKKATSNGAEDKRKDELIAALQSEVARLTKRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASAELETAQEQVRGLQGSLRDQERKLAQLQEAEEGHSEEMSALREARDELKSQLKAAKAQANESSCIAQRLQEELEEVTKSR 1469          
BLAST of mRNA_C-linearis_contig88.16344.1 vs. uniprot
Match: D7FMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD5_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.470e-19
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 0
Query:  316 VKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAFTVVLRVRYDGSTWCLLRSTQ 370
            VKRLK+LLSK QKSSHSKDADLAALKAP PPPKAFTV LRVR++GSTWC +++TQ
Sbjct:    2 VKRLKSLLSKLQKSSHSKDADLAALKAPAPPPKAFTVALRVRHEGSTWCFVKATQ 56          
BLAST of mRNA_C-linearis_contig88.16344.1 vs. uniprot
Match: D8LKN4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-7
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 0
Query:    1 MASQKDKLRKAAARLRSLKEERDTANEKLASTSALLETSEKILADA 46
            +A QKDKL+KAAARLRSLKEERD A EK+A TSALLETSEK LADA
Sbjct:  809 VAGQKDKLKKAAARLRSLKEERDAATEKVAFTSALLETSEKNLADA 854          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16344.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KSR4_9PHAE2.610e-10256.26GRIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FMD5_ECTSI2.470e-1981.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKN4_ECTSI4.080e-782.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 527..596
NoneNo IPR availableCOILSCoilCoilcoord: 491..511
NoneNo IPR availableCOILSCoilCoilcoord: 453..473
NoneNo IPR availableCOILSCoilCoilcoord: 267..301
NoneNo IPR availableCOILSCoilCoilcoord: 151..185
NoneNo IPR availableCOILSCoilCoilcoord: 309..329
NoneNo IPR availableCOILSCoilCoilcoord: 71..126
NoneNo IPR availableCOILSCoilCoilcoord: 1..63
NoneNo IPR availablePANTHERPTHR34491FAMILY NOT NAMEDcoord: 4..340
coord: 181..617
NoneNo IPR availableSUPERFAMILY57997Tropomyosincoord: 530..617

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:210838..219682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16344.1mRNA_C-linearis_contig88.16344.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 203556..223147 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16344.1 ID=prot_C-linearis_contig88.16344.1|Name=mRNA_C-linearis_contig88.16344.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=682bp
MASQKDKLRKAAARLRSLKEERDTANEKLASTSALLETSEKILADAEARC
RALEEAAGGEEEKEATAAAAQRDAEARAAAAEEKLSAAEQEKSELRQQMA
ALTESLHQAGERAESEAQELTRLESDVGESCRRLGEAEAALHESQESAAR
VYTLESELETERARLGQLESELEGTRAGARELESLKGAVRESEEMMGALQ
GQVDAANKGRDAAVASLETAEKETSKTRLKELFVKYKAVQAKHKAAQDGA
EALKLEAQKVPGLENTSTELQSKVEELSSKLAAAEASVKDKEEEFSKTAT
EKAVEKSAKEDLEVKVKRLKTLLSKSQKSSHSKDADLAALKAPPPPPKAF
TVVLRVRYDGSTWCLLRSTQAGSSGDGDADKADAAATPDKDNNSQEVGQK
QKQQWATEDKARAWIAGGSSVSDTALWAQVVQDVFEEKATAAAAEIRVVT
AGAQSTRQELEALSSEFAKYKARAHTALKKATSSGADDKRKDELIAALQS
EQTRLSNLLAETTSSLESQLSDERGVFKAREDDLEAASAQLETAQEQVRE
LQGSLRDQERKVAQLQEAEDGHSEEMSALREARGDLKAQLKAAKAQAYES
SSITQRLQEELEELSKEKAGRAGVAAGATVAGQANRSWPPTRSKRRQGRL
RGCPRCLCQPALPGSVAQGQRQHRLFRTAVV*
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