prot_C-linearis_contig88.16338.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig88.16338.1
Unique Nameprot_C-linearis_contig88.16338.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length291
Homology
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BLAST of mRNA_C-linearis_contig88.16338.1 vs. uniprot
Match: D7FM67_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM67_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 9.780e-91
Identity = 196/310 (63.23%), Postives = 226/310 (72.90%), Query Frame = 0 
Query:    1 MKDVSASVCFLSLLLGCVVLSTGFITPVPV-TRSRALGTKPLAEPYES----------RVYE--RRHATISAAHSNMPSSGVSEESSRPPS--RLSRISGHVRKMIRKAIMGYVPEEEVSYKERAAQQAAAAAKLRGEPEIADERLRGASLAAKAAAIEAVEQSVLV-----EDDEDEDDILNSGFVQLNIGDQSPMEAEDKLASLRKRLEQGLPPDTAQEQAEKRXXXXXXXXXXXXXXXXXXRPPSFDGDTAVAERPSSPLGAPQANEGQGQGAMRPSASKEAPKLASPEDVQRLNRMFGSMGGEPLR 290
            M  +  S+ F+++L+       GF+ PVPV TR+R +        + S          R  E  RR A++SAA   MPS G+S E   P    RLSRISG VRK+IR+A+MGY+PEEEVSYK+RA +Q AAAAKLRGEPEIADERLR AS+AAKAAAIEAVE+S +       + E++D + N+ FVQLNIGD+SPME EDKLASLR RLEQGLPPDTAQEQAEK    XXXXXXXXXXXXXXXRPPSFDGDTAVAERPSS L A QANEG     MRP A KEAPK+AS EDV+RLNRMFGSMGGEPLR
Sbjct:    1 MAPMKLSISFIAVLIAVFDGVDGFVGPVPVGTRARVVRRAMATNGFHSTTRVQGRSLPRAQEPLRRQASMSAAPDKMPSPGISGEEGAPQKGGRLSRISGRVRKIIRRAVMGYLPEEEVSYKQRAEEQEAAAAKLRGEPEIADERLRDASIAAKAAAIEAVEESFVQGSFTGNEGEEDDWLANNDFVQLNIGDESPMEIEDKLASLRNRLEQGLPPDTAQEQAEK----XXXXXXXXXXXXXXXRPPSFDGDTAVAERPSSNLDARQANEG----GMRPQAPKEAPKMASAEDVERLNRMFGSMGGEPLR 302
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig88.16338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM67_ECTSI9.780e-9163.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 200..220
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..290
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..23
score: 0.51
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig88contigC-linearis_contig88:145584..150694 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig88.16338.1mRNA_C-linearis_contig88.16338.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig88 145469..151579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig88.16338.1 ID=prot_C-linearis_contig88.16338.1|Name=mRNA_C-linearis_contig88.16338.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=291bp
MKDVSASVCFLSLLLGCVVLSTGFITPVPVTRSRALGTKPLAEPYESRVY
ERRHATISAAHSNMPSSGVSEESSRPPSRLSRISGHVRKMIRKAIMGYVP
EEEVSYKERAAQQAAAAAKLRGEPEIADERLRGASLAAKAAAIEAVEQSV
LVEDDEDEDDILNSGFVQLNIGDQSPMEAEDKLASLRKRLEQGLPPDTAQ
EQAEKRRLAMQQQLRQQQQQQKSSRPPSFDGDTAVAERPSSPLGAPQANE
GQGQGAMRPSASKEAPKLASPEDVQRLNRMFGSMGGEPLR*
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