prot_C-linearis_contig87.16299.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16299.1
Unique Nameprot_C-linearis_contig87.16299.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length704
Homology
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BLAST of mRNA_C-linearis_contig87.16299.1 vs. uniprot
Match: D8LL34_ECTSI (EsV-1-7 (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL34_ECTSI)

HSP 1 Score: 494 bits (1273), Expect = 6.430e-164
Identity = 479/621 (77.13%), Postives = 511/621 (82.29%), Query Frame = 0 
Query:   38 PTGRDS--GYS--HPQHQSAPYPMHSFSGPPSTAASGN----TAREIGSTGGFLHPGDDG-GSEAARHLGSSMGVISASASPPHPAPLPSSRREGYPDVAVARQCEREGCNVQPSYGKVWKKPRFCARHKLPGMMDVRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRRRXXXXXXXXXXXXXXXXXXXXXXXXXXQAGHVNVNNRXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGMQDSRLNAEGRGRARGAAASRPSQVAAAQQRMYGG---GGQGXXXXXXXXXXXXXXXXXXXXXXXX-MDGDMMFAGGANGDVKMPI------------RNVQARQAAAQATVSAAAAVIAAIEDEARLDYRGHPVAHGGHRNGGG-FREGDADMYGALDHGGGFXXXXXGPGMSRPKTEIGAWASALFSADGRDGNGAGSLDSSRPSSAGMAPPHGYGEVWQSAPPRS---SASPPVGST-STLSDVSNGSAAVGVVSSREMSEADMYHRMGSVSAPMGGSGGGGASGRGVLSSQHYGADERSSRGFLNGLGNSGGSG-----DFVSSFSSQQTNTWQG 623
            PTGR    GYS  H  HQ+ PYPMHSFSGPPS++ +G     +AR+ GSTG FLHPG  G G EA R LG++MGV+SA++ P  P   P+SRR+GYPDVAVARQCEREGCNVQPSYGKVWKKPRFCARHKLPGMMDVRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRRRXXXXXXXXXXXXXXXXXXXXXXXXXXQAGHVNVNNRXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGMQDSRLNAEGRGRAR  AASRPSQVAAAQQRMYGG   GG G XXXXXXXXXX              ++GDMMF   ANGDVK P+            RNVQ R  AAQATVSAAAAVIAAIEDEARLD RGH V HG +RNGGG FRE + DMY  L +GGGFXXXXX   M+RPKTE  AWASALFSA+GRDGNGAGSLDSSRPSSAGMAPPHGYGEVWQSAP R+   + SPPVGS  STLSDVSNGSAAVG+VSSREM+EA+MYHRM S SAPM G    G SGRGVLSSQHY +DER++RGFLNGL ++G        DFVS+FSSQQ NTWQG
Sbjct:    7 PTGRPDQHGYSLGH-SHQTGPYPMHSFSGPPSSSVAGGIDVRSARDSGSTGVFLHPGPSGDGGEAVRALGNNMGVMSAASPPSAP---PTSRRDGYPDVAVARQCEREGCNVQPSYGKVWKKPRFCARHKLPGMMDVRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKRRRXXXXXXXXXXXXXXXXXXXXXXXXXXQAGHVNVNNRXXXXXXXXXXXXXXXXXXXXXXXXXXXLDGMQDSRLNAEGRGRARAGAASRPSQVAAAQQRMYGGQNAGGYGRXXXXXXXXXXRGMANGNMGGGATGVNGDMMFGARANGDVKGPMLSHGGGGIGGPHRNVQERATAAQATVSAAAAVIAAIEDEARLDSRGHAV-HGVYRNGGGGFRESEVDMYEGLHNGGGFXXXXXXXSMARPKTEP-AWASALFSAEGRDGNGAGSLDSSRPSSAGMAPPHGYGEVWQSAPSRTGGGAGSPPVGSAASTLSDVSNGSAAVGIVSSREMNEAEMYHRMASTSAPMDG----GGSGRGVLSSQHY-SDERNNRGFLNGLTSNGXXXXXXXXDFVSTFSSQQGNTWQG 616
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL34_ECTSI6.430e-16477.13EsV-1-7 (Partial) (Fragment) n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..704
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:541231..547531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16299.1mRNA_C-linearis_contig87.16299.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 541231..547533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16299.1 ID=prot_C-linearis_contig87.16299.1|Name=mRNA_C-linearis_contig87.16299.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=704bp
SPPLSVGLLAFARAHGRALKMRSAGGGTTGSNYNSRGPTGRDSGYSHPQH
QSAPYPMHSFSGPPSTAASGNTAREIGSTGGFLHPGDDGGSEAARHLGSS
MGVISASASPPHPAPLPSSRREGYPDVAVARQCEREGCNVQPSYGKVWKK
PRFCARHKLPGMMDVRNRRCEEPDCTRQPSYGKEGQRRQFCFTHKRPGDV
DVKSTRCKSTGCPKHAMYGRPGEMPQYCSAHKAEDMVDVKKRRRCNAEHC
ERRASYALDGEKAAFCSAHKQAGHVNVNNRRCEFHGCSRRPVFSHKGEKP
RFCLAHKLDGMQDSRLNAEGRGRARGAAASRPSQVAAAQQRMYGGGGQGG
YGRAGVGRAGVGNGVAGGHMGGGMDGDMMFAGGANGDVKMPIRNVQARQA
AAQATVSAAAAVIAAIEDEARLDYRGHPVAHGGHRNGGGFREGDADMYGA
LDHGGGFGGGGGGPGMSRPKTEIGAWASALFSADGRDGNGAGSLDSSRPS
SAGMAPPHGYGEVWQSAPPRSSASPPVGSTSTLSDVSNGSAAVGVVSSRE
MSEADMYHRMGSVSAPMGGSGGGGASGRGVLSSQHYGADERSSRGFLNGL
GNSGGSGDFVSSFSSQQTNTWQGGNDDDGGGGGGDLQWERAERSRPRPPP
LPAPLSQSASSSSTGWGRAVGVNASSDMHRHGGGGMHAPSQQQQQQRLPS
ILNR
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