prot_C-linearis_contig87.16293.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16293.1
Unique Nameprot_C-linearis_contig87.16293.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length141
Homology
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BLAST of mRNA_C-linearis_contig87.16293.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 7.100e-16
Identity = 55/116 (47.41%), Postives = 64/116 (55.17%), Query Frame = 0 
Query:   35 LAPQNGSRCKEKRRNAQGGTRGGRGGGRRGVATRNGPGRGHAGRVGGR----------GAAKQRQRVFTLPLGKDDKSTTVAVRLGNADNWVITSVNPEEERPAARGRYAKDYRRG 140
             AP +G RCKE+R  A+GG+         GVA R+G GR                   G AKQRQRVF LP G  D+STTVAVRLGNADNWVITSVNPE +  +      +  R G
Sbjct:   33 FAPPDGFRCKEQRSKARGGSXXXXXXXXGGVAPRSGQGRXXXXXXXXXXXXXXXXXXGGEAKQRQRVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAG 148
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BLAST of mRNA_C-linearis_contig87.16293.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.430e-12
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 0 
Query:   83 GAAKQRQRVFTLPLGKDDKSTTVAVRLGNADNWVITSVNPEEERPAARGRYAKDYRRG 140
            G AKQRQ VF LP G  D+STTVAVRLGNADNWVITSVNPE +  +      +  R G
Sbjct:   55 GEAKQRQIVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAG 112
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16293.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSV9_ECTSI7.100e-1647.41Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FR12_ECTSI2.430e-1262.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:331315..332051 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16293.1mRNA_C-linearis_contig87.16293.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 330866..332459 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16293.1 ID=prot_C-linearis_contig87.16293.1|Name=mRNA_C-linearis_contig87.16293.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=141bp
MHKMAPKRAPRHCCFPSHDPCPRPRHFPSVFRAALAPQNGSRCKEKRRNA
QGGTRGGRGGGRRGVATRNGPGRGHAGRVGGRGAAKQRQRVFTLPLGKDD
KSTTVAVRLGNADNWVITSVNPEEERPAARGRYAKDYRRG*
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