prot_C-linearis_contig87.16276.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig87.16276.1
Unique Nameprot_C-linearis_contig87.16276.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length223
Homology
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 3.050e-73
Identity = 122/175 (69.71%), Postives = 135/175 (77.14%), Query Frame = 0
Query:   21 AFLPPFAGGAVDRLTRATASARRGCR-QRLAAYNSSP----------YNSDDDPATTTSMSFKSPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPFVF 184
            AF+ P+A   +D L     S+  G R QRLAAY++SP          + S      TT+M FKSP+DVLKQGIAK GAGPYDKDAV+K+V+ YTSG  KVVVFSWTRCPFCKKAK L+EDLL DPADYEFVELDERQDGNAIRYELSQ TGRTSVPQIWIGGEFVGGCNDGP VF
Sbjct:    6 AFVHPYAARTMDGLASPHGSSSSGYRAQRLAAYSNSPPCSKGSVTARHRSVRRTTRTTTMGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRCPFCKKAKGLIEDLLADPADYEFVELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCNDGPGVF 180          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A835YLP8_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.960e-31
Identity = 62/110 (56.36%), Postives = 81/110 (73.64%), Query Frame = 0
Query:   73 SPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQD-GNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            SP +  K+ IAKAG G Y++  V   +  Y + + KV+VFSWT CPFCKKAK  + +L++ P+ Y+ VELD+  + G A R+ELS+ITGRTSVPQIWI GEF+GGCNDGP
Sbjct:   57 SPFNQFKKFIAKAGTGEYNEAEVAGKINSYIA-DNKVMVFSWTNCPFCKKAKAQLAELME-PSQYKVVELDQDAELGKAYRFELSKITGRTSVPQIWIKGEFIGGCNDGP 164          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A8J9RIT3_9CHLO (Probable Glutaredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIT3_9CHLO)

HSP 1 Score: 112 bits (280), Expect = 2.320e-27
Identity = 60/109 (55.05%), Postives = 74/109 (67.89%), Query Frame = 0
Query:   73 SPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            SP + +K+ IA A AG YD+ A+   V+ Y   +  VVVFSWTRCPFC KAKR ++ L    A Y  VELD   DGNAIR EL++ T RTS+P +WI GE +GGCNDGP
Sbjct:   67 SPANAVKKAIAAAQAGQYDEAAIGGKVDAYIK-DNPVVVFSWTRCPFCIKAKRELDSL---NAKYLAVELDTMADGNAIRSELAKRTNRTSMPNVWINGEGIGGCNDGP 171          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A7S2V0C9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0C9_9STRA)

HSP 1 Score: 110 bits (275), Expect = 5.470e-27
Identity = 64/120 (53.33%), Postives = 80/120 (66.67%), Query Frame = 0
Query:   67 TSMSFKSPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKR-LVEDLLDDPADYEFVELDERQD-GNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGPFVF 184
            +S+S   P+   KQ IA A AG YDK  +   +++     + VV+FSWT CPFCKKAK+ L+ED+    A  + VELDE    GNAIR EL + TGRTSVP IW+G E+VGGCNDGP VF
Sbjct:   23 SSISQVGPVAFFKQSIADAVAGDYDKVEINNEIDKAIENNS-VVIFSWTTCPFCKKAKQFLIEDI---GATVKVVELDEDPKIGNAIRAELGKRTGRTSVPSIWVGKEYVGGCNDGPGVF 138          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A061R5D6_9CHLO (Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5D6_9CHLO)

HSP 1 Score: 110 bits (275), Expect = 2.350e-26
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 0
Query:   73 SPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            SPL+  K  +AK  AG YDK AV   VE   S E KVVVFS++ CPFC KAK L++D+    A+YE VEL++  ++G AIR EL+++TGRTS+P IWI GE +GGCNDGP
Sbjct:   86 SPLNKGKIELAKLQAGDYDKTAVRAKVENXISSE-KVVVFSFSTCPFCVKAKELLQDV---GAEYEAVELNDMGKEGYAIRAELAELTGRTSMPNIWIAGEGIGGCNDGP 191          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A2P6TGA2_CHLSO (Glyoxalase domain-containing 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGA2_CHLSO)

HSP 1 Score: 104 bits (259), Expect = 1.870e-24
Identity = 62/153 (40.52%), Postives = 88/153 (57.52%), Query Frame = 0
Query:   33 RLTRATASARRGCRQRLAAYNSSPYNSDDDPATTTSMSFKSPL-DVLKQG---IAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            ++TR    +  G   R     + P      P+   +++ K+ L D   QG    A A AG YD+ A    +E+Y + +  VVVFSW+ CPFCK+AK +++      A Y  +ELD+  DG A+R EL++ TGR+SVP IWI G+ VGGCNDGP
Sbjct:    4 QITRVAGGSAAGVAPRTLQRAARPQRPAAAPSRQRAVAVKAGLLDFFNQGKVQAAVAAAGQYDEAATKAAIEKYIA-DNPVVVFSWSGCPFCKRAKAVLDAT---GAKYTALELDQMADGKALRAELAKKTGRSSVPNIWIAGQNVGGCNDGP 152          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A2V0PHJ4_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHJ4_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 6.930e-24
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 0
Query:   72 KSPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            +SPL+  K+ +AK  AG YD+ AV   +E   +G T VV+FS++ CPFC +AK L+ +L    A YE +EL+E  +DG  +R EL+Q+T RTS+P IWI G FVGGCNDGP
Sbjct:   56 ESPLNKGKKALAKLQAGDYDEAAVRAKLEGILTG-TPVVMFSFSTCPFCNRAKALLNEL---GASYEAIELNEMGKDGMQLRAELAQMTDRTSMPSIWIQGSFVGGCNDGP 162          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A383W3I8_TETOB (Glutaredoxin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3I8_TETOB)

HSP 1 Score: 102 bits (255), Expect = 1.050e-23
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 0
Query:   73 SPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDER-QDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            SP++  K+ +AKA AG YD+ AV   +E     + KV+VFSW+ CPFCK AK L+ D+    AD+  +ELD   Q+G  IR EL+ +T RTSVP IWI G+ VGGCNDGP
Sbjct:   60 SPINEGKKALAKAQAGDYDEKAVRGKIEGLIK-DNKVMVFSWSGCPFCKNAKALLSDV---GADFTALELDTLGQEGKQIRAELAAMTERTSVPNIWIAGKNVGGCNDGP 165          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A7S1VWZ1_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1VWZ1_9STRA)

HSP 1 Score: 100 bits (249), Expect = 6.480e-23
Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 0
Query:   64 ATTTSMSFKSPLDVL-------KQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            +TTT+++  +P+D L       K G+ K+ AG YD  AV   +++  S +  V++FS+T CPFC KAK   E L +  A Y  VELD+  DG AIR  + +  GRTSVP IWI G F+GGCNDGP
Sbjct:   35 STTTALAMGNPIDGLFAFLKEGKVGLVKSLAGDYDAAAVQSKMDKLIS-DNNVLMFSFTTCPFCIKAK---ETLDEKGAKYTVVELDQVSDGKAIRAVMGESLGRTSVPAIWIKGTFIGGCNDGP 155          
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Match: A0A2P6V558_9CHLO (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V558_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 3.330e-21
Identity = 54/109 (49.54%), Postives = 73/109 (66.97%), Query Frame = 0
Query:   73 SPLDVLKQGIAKAGAGPYDKDAVLKLVEEYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNAIRYELSQITGRTSVPQIWIGGEFVGGCNDGP 181
            SPL+  K  +A + AG YD  A   ++++  + +   VVFSW+ CPFCK AK +++      A Y  +ELD+R DG AIR EL+++TGR+SVP IWIG E VGGCNDGP
Sbjct:   22 SPLNQGKVALAVSQAGDYDAAATKAMIDQAIA-DNGCVVFSWSGCPFCKNAKAVLDAT---GAKYVALELDQRPDGKAIRAELAKMTGRSSVPNIWIGKENVGGCNDGP 126          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig87.16276.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL7_ECTSI3.050e-7369.71Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835YLP8_9STRA1.960e-3156.36Selenoprotein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A8J9RIT3_9CHLO2.320e-2755.05Probable Glutaredoxin at C-terminar half n=1 Tax=C... [more]
A0A7S2V0C9_9STRA5.470e-2753.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A061R5D6_9CHLO2.350e-2656.36Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. ... [more]
A0A2P6TGA2_CHLSO1.870e-2440.52Glyoxalase domain-containing 4 n=1 Tax=Chlorella s... [more]
A0A2V0PHJ4_9CHLO6.930e-2451.35Glutaredoxin domain-containing protein n=1 Tax=Rap... [more]
A0A383W3I8_TETOB1.050e-2351.82Glutaredoxin domain-containing protein n=1 Tax=Tet... [more]
A0A7S1VWZ1_9STRA6.480e-2346.40Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A2P6V558_9CHLO3.330e-2149.54NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014025Glutaredoxin subgroupPRINTSPR00160GLUTAREDOXINcoord: 157..170
score: 44.64
coord: 171..184
score: 28.27
coord: 109..127
score: 44.08
NoneNo IPR availableGENE3D3.40.30.10coord: 94..181
e-value: 1.5E-25
score: 91.0
NoneNo IPR availablePANTHERPTHR45694:SF5GLUTAREDOXIN 2coord: 108..179
NoneNo IPR availablePANTHERPTHR45694FAMILY NOT NAMEDcoord: 108..179
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..222
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..29
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.791
IPR002109GlutaredoxinPFAMPF00462Glutaredoxincoord: 109..174
e-value: 3.3E-17
score: 62.4
IPR002109GlutaredoxinPROSITEPS51354GLUTAREDOXIN_2coord: 97..200
score: 15.871
IPR011767Glutaredoxin active sitePROSITEPS00195GLUTAREDOXIN_1coord: 111..127
IPR036249Thioredoxin-like superfamilySUPERFAMILY52833Thioredoxin-likecoord: 105..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig87contigC-linearis_contig87:101920..104801 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig87.16276.1mRNA_C-linearis_contig87.16276.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig87 100337..104875 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig87.16276.1 ID=prot_C-linearis_contig87.16276.1|Name=mRNA_C-linearis_contig87.16276.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp
MHCFDLAVVLLGSVMVCRATAFLPPFAGGAVDRLTRATASARRGCRQRLA
AYNSSPYNSDDDPATTTSMSFKSPLDVLKQGIAKAGAGPYDKDAVLKLVE
EYTSGETKVVVFSWTRCPFCKKAKRLVEDLLDDPADYEFVELDERQDGNA
IRYELSQITGRTSVPQIWIGGEFVGGCNDGPFVFFRIFLCCRLLVYSSSS
FFFESRYFFSHHRYGALWSKTS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014025Glutaredoxin_subgr
IPR002109Glutaredoxin
IPR011767GLR_AS
IPR036249Thioredoxin-like_sf