prot_C-linearis_contig86.16251.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig86.16251.1
Unique Nameprot_C-linearis_contig86.16251.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1203
Homology
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: D8LRE2_ECTSI (DEAD domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE2_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 9.950e-77
Identity = 152/286 (53.15%), Postives = 193/286 (67.48%), Query Frame = 0
Query:    6 LHPALSRSLKAEEEEATPLQMSLWAEGSAGSDIIIEATSSPGTATALAVLVIERLVDALEAVEAAIPFYLRNRRR---------------LQSQSRSXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXDKRPKLQALVLTKNREIAASVTDALQRIGKGCVPNLAVATLTGGVAVAENAKTLEDGCHVAVGTPGRVKFLMDKGVLRAEPARQLVLESADWLLAPVFLEDVRYIVSKFPQEKQVVASSTVEPTAAIVESLCALVGVPALKRLDASGAVQESRVRMP 276
            L PAL +SL+AEE + TPLQ S+W+E  AG+D++IEA S P T TALAVLV++RLV A+ + EAA+P Y R R                 L++ S +             L                    +P+L ALVLTKNRE+AA V D L R+GK  VPNL +A+L GG+AV+ENA+TL  GCHVA+GTPGRVKFL+DKGVL A+  R LVLESADWL+APVF+EDV Y+V +FP+EKQVV SSTV+P+ A  E LC ++GVPALKRLD SGA++E++VRMP
Sbjct:    3 LPPALQKSLEAEEVQVTPLQASVWSEARAGADLLIEAKSGPETTTALAVLVLDRLVAAISSAEAALPRYARKRTSSFSGLSGLNRIVSSVLRTTSSNNNGNSNVKDGESDLSTANGSSGSGGLL-------KPQLCALVLTKNREVAAGVKDTLLRLGKTSVPNLTIASLVGGIAVSENAQTLSAGCHVAIGTPGRVKFLIDKGVLVADTGRLLVLESADWLMAPVFMEDVDYVVRRFPEEKQVVLSSTVKPSVAFEEGLCEILGVPALKRLDPSGAIEEAQVRMP 281          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: A0A6H5KMB9_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB9_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 7.680e-54
Identity = 115/152 (75.66%), Postives = 126/152 (82.89%), Query Frame = 0
Query:  822 LARLGQNITSLSVATLIGGVPVAENHRALADG-CNVAVGTPGRVKFLMKEGALKVSAS-KTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEAGLTALVGSSGMTPIGCSCPV-DSG---CASTAMVLEQGEALAAALTG 967
            L RLG+ I SLSVATLIGGVPV+ENH+ALA G CNV VGTPGRVKFL+KEG L+VSA+ +TLVLDSADWLMAPVF +DVGWIA  FPKDKQVLAFSGADP TY+AGLTALV SSGMTP+G S    DSG   C STAM L+ GEA  AALTG
Sbjct:    2 LTRLGEGIPSLSVATLIGGVPVSENHKALAGGGCNVVVGTPGRVKFLIKEGTLRVSAAARTLVLDSADWLMAPVFHDDVGWIARNFPKDKQVLAFSGADPATYKAGLTALVDSSGMTPVGVSSGGGDSGGGDCVSTAMTLDNGEAAVAALTG 153          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: A0A6H5KKW2_9PHAE (DEAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW2_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 5.610e-45
Identity = 91/135 (67.41%), Postives = 112/135 (82.96%), Query Frame = 0
Query:  142 DALQRIGKGCVPNLAVATLTGGVAVAENAKTLEDGCHVAVGTPGRVKFLMDKGVLRAEPARQLVLESADWLLAPVFLEDVRYIVSKFPQEKQVVASSTVEPTAAIVESLCALVGVPALKRLDASGAVQESRVRMP 276
            + L R+GK  VPNL +A+L GG+AVAENA+TL  GCHVA+GTPGRVKFL+DKGVL  +  R LVLESADWL+APVF+EDV Y+V +FP+EKQVV SSTV+P+ A  E LC ++GVPALKRLD SGA+ E++VRMP
Sbjct:    2 ETLLRLGKSSVPNLTIASLVGGIAVAENARTLSAGCHVAIGTPGRVKFLIDKGVLVPDTGRLLVLESADWLMAPVFMEDVDYVVRRFPEEKQVVLSSTVKPSVAFEEGLCEILGVPALKRLDPSGAIGEAKVRMP 136          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: D8LRE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE3_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 1.480e-40
Identity = 90/149 (60.40%), Postives = 106/149 (71.14%), Query Frame = 0
Query:  697 SSLSLREEEWRMPPVLLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSE----AAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGV 841
            S+ SLRE +  +P  LL +L+ANGVT PTPLQE+VW  GRG  R DL+VH RPGDETATA+CVPVLERVLERYP  L       E +ARAP       AA    + + YE+VALVLTRTR+MA+D+   L RLG+ I SLSVATLIGGV
Sbjct:    6 STASLREAKRNIPAELLASLDANGVTLPTPLQESVWSIGRGAGREDLLVHARPGDETATAYCVPVLERVLERYPQPLCG---DCEQAARAPAPSGGGGAACTGADREKYEVVALVLTRTRDMASDVTTMLTRLGEGIPSLSVATLIGGV 151          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: C1E4C7_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E4C7_MICCC)

HSP 1 Score: 106 bits (264), Expect = 8.080e-21
Identity = 74/220 (33.64%), Postives = 108/220 (49.09%), Query Frame = 0
Query:  712 LLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNIT--SLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEAGLTAL 929
            ++  L  +G T P+P+Q A      GR  ADL+V  + G      F   + ERV                                S  Y   ALVL  TRE+A    + LA+L + +   +L VA  +GG+PVA++  ALA GC + VGTPGRV+ L++EG++     +TLV+D AD L+   FE DV ++ +  P+ KQV+AFS   P    A +  +
Sbjct:    4 VVRGLNLSGFTIPSPVQRAAIP--LGRLGADLVVQAKSGTGKTVTFGAILCERV------------------------------DRSSAYPQ-ALVLAPTREVALQSRDALAKLARALDPPALRVACFLGGLPVADDRAALASGCQLCVGTPGRVRQLLEEGSMAPGGIRTLVIDEADALVGGAFEHDVLFVHSMLPERKQVMAFSATYPSRTLARIETM 190          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: UPI0009E35F65 (probable ATP-dependent RNA helicase DDX20 isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E35F65)

HSP 1 Score: 108 bits (271), Expect = 2.590e-20
Identity = 69/218 (31.65%), Postives = 104/218 (47.71%), Query Frame = 0
Query:  710 PVLLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEAGLT 927
            P +L  L ++G   P+P+Q        GR   DLI   + G      F V  LE VL                             PES   ++  L+L  TRE+A  I + ++ +G  + ++     IGG+PV EN + L   C++AVGTPGRVK+L++   LK  + +  +LD AD L+   F+E + WI +  P +KQ++AFS   P+     LT
Sbjct:   34 PDVLKGLNSSGFERPSPIQLKAIP--LGRCGLDLIAQAKSGTGKTCVFSVIALESVL-----------------------------PESNTTQV--LILAPTREIAVQIKDVISAIGSQMDNMVCQVFIGGLPVDENKKILKKPCHIAVGTPGRVKYLIENHFLKTESVRLFILDEADKLLEDNFQEQINWIFSSLPSNKQMMAFSATYPEYLAKHLT 218          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: UPI0012F9EEE0 (ATP-dependent RNA helicase DbpA n=1 Tax=Azohydromonas aeria TaxID=2590212 RepID=UPI0012F9EEE0)

HSP 1 Score: 102 bits (255), Expect = 4.960e-19
Identity = 72/222 (32.43%), Postives = 104/222 (46.85%), Query Frame = 0
Query:  708 MPPVLLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEAGLTAL 929
            +PP LL  LE  G T  TP+Q A        A  DLI   R G     AF +P+L R+                               ++  +E+ ALVL  TRE+A  + + + RL +   ++    L GG P+     +LA G +V VGTPGR+   ++ G L++ A  TLVLD AD ++   F +D+  +AA+ PK +Q L FS     TY  G+  L
Sbjct:   18 LPPALLDNLEQLGFTAMTPIQAAALP--LALAGHDLIAQARTGSGKTAAFALPLLTRL-------------------------------DTDRFEVQALVLCPTRELAEQVTQQIRRLARAEANVKALNLSGGSPIKPQAESLAHGAHVVVGTPGRLLDHLERGNLRLDALTTLVLDEADRMLDMGFFDDIAAVAAKCPKQRQTLLFSA----TYPEGIAKL 202          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: E6X032_NITSE (DEAD/DEAH box helicase domain protein n=2 Tax=Nitratifractor salsuginis TaxID=269261 RepID=E6X032_NITSE)

HSP 1 Score: 102 bits (253), Expect = 5.210e-19
Identity = 71/224 (31.70%), Postives = 112/224 (50.00%), Query Frame = 0
Query:  710 PVLLTALEANGVTHPTPLQE----AVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGA---DPKTYEAGL 926
            P +L A+ A G T PTP+Q     AV +G       D++   + G      F +P+LER+++                           P + +  ++ ALVLT TRE+AA +AE++   G+N+   S   + GGV +    RA+A GC + + TPGR+  L  + A+ +SA +TL+LD AD ++   F  D+  I A+ PK++Q L FS     + K   AG+
Sbjct:   15 PAILKAVSAEGYTTPTPIQAQAIPAVLEG------HDVLAAAQTGTGKTAGFTLPLLERLIQN--------------------------PRQMKARQVRALVLTPTRELAAQVAESVRTYGKNLKIRST-VVYGGVGIEPQKRAIARGCEIVIATPGRLLDLANQRAIDLSALETLILDEADRMLDMGFIHDIKKIIAQTPKERQTLLFSATFSPEIKRLAAGM 205          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: UPI0015AEADEA (probable ATP-dependent RNA helicase DDX20 n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015AEADEA)

HSP 1 Score: 99.0 bits (245), Expect = 6.240e-19
Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 0
Query:  723 HPTPLQ-EAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEA 924
            HP+P+Q EA+     GR   DL++  + G      F V  LE +++                                +  L  L++  TRE+A  I + +  +G + T L  A+ IGG+P+ E+ +A +  C +AVGTPGR+K L+  G L+ +A +  VLD AD L+      D+ WI    P+DKQV+A S   PK  EA
Sbjct:   46 HPSPIQLEAI---PAGRCGTDLVIQAKSGTGKTLVFTVIALEMLID--------------------------------IKTLQVLIMAPTREIATQICDVIKTVGSSFTKLRCASFIGGLPLEED-KAKSLHCQIAVGTPGRIKQLIDIGYLRTNAVRLFVLDEADELLRATCTGDIDWIFQTLPEDKQVIAASATYPKELEA 212          
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Match: A0A3M6V3Y6_POCDA (RNA helicase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6V3Y6_POCDA)

HSP 1 Score: 103 bits (258), Expect = 9.940e-19
Identity = 67/219 (30.59%), Postives = 102/219 (46.58%), Query Frame = 0
Query:  710 PVLLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPGDETATAFCVPVLERV-LERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQVYELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRALADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGWIAARFPKDKQVLAFSGADPKTYEAGLT 927
            P +L  L ++G   P+P+Q        GR   DLI   + G      F V  LE V L+   T +                                L+L  TRE+A  I + +  +G  + +L     IGG+PV E+ +AL   C++AVGTPGRVK+L++   LK  + +  +LD AD L+   F+E + W+ +  P +KQ++AFS   P+     LT
Sbjct:   34 PDVLKGLSSSGFERPSPIQLKAIP--LGRCGLDLIAQAKSGTGKTCVFSVIALESVQLDSSKTQV--------------------------------LILAPTREIAVQIKDVITAIGSEMKNLVCHVFIGGLPVDEDKKALRKSCHIAVGTPGRVKYLIENHLLKTESVRLFILDEADKLLEDNFQEQINWVFSSLPSNKQMMAFSATYPEYLAKHLT 218          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16251.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRE2_ECTSI9.950e-7753.15DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6H5KMB9_9PHAE7.680e-5475.66DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KKW2_9PHAE5.610e-4567.41DEAD domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LRE3_ECTSI1.480e-4060.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C1E4C7_MICCC8.080e-2133.64Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
UPI0009E35F652.590e-2031.65probable ATP-dependent RNA helicase DDX20 isoform ... [more]
UPI0012F9EEE04.960e-1932.43ATP-dependent RNA helicase DbpA n=1 Tax=Azohydromo... [more]
E6X032_NITSE5.210e-1931.70DEAD/DEAH box helicase domain protein n=2 Tax=Nitr... [more]
UPI0015AEADEA6.240e-1932.02probable ATP-dependent RNA helicase DDX20 n=1 Tax=... [more]
A0A3M6V3Y6_POCDA9.940e-1930.59RNA helicase n=1 Tax=Pocillopora damicornis TaxID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 720..956
e-value: 0.0039
score: 20.9
coord: 17..265
e-value: 0.023
score: 10.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 769..916
score: 11.031
NoneNo IPR availableGENE3D3.40.50.300coord: 704..933
e-value: 3.5E-33
score: 116.6
NoneNo IPR availablePANTHERPTHR24031:SF650coord: 707..920
coord: 124..238
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 707..920
coord: 124..238
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 743..916
e-value: 1.8E-16
score: 60.4
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 22..240
e-value: 2.0E-12
score: 47.3
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 701..729
score: 8.354
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..239
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 702..919

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:621227..633261 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16251.1mRNA_C-linearis_contig86.16251.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig86 621056..633297 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig86.16251.1 ID=prot_C-linearis_contig86.16251.1|Name=mRNA_C-linearis_contig86.16251.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1203bp
MASPSLHPALSRSLKAEEEEATPLQMSLWAEGSAGSDIIIEATSSPGTAT
ALAVLVIERLVDALEAVEAAIPFYLRNRRRLQSQSRSSSLSSSSSSSLTK
LFFGATTPTAGGMQGGSDDDKRPKLQALVLTKNREIAASVTDALQRIGKG
CVPNLAVATLTGGVAVAENAKTLEDGCHVAVGTPGRVKFLMDKGVLRAEP
ARQLVLESADWLLAPVFLEDVRYIVSKFPQEKQVVASSTVEPTAAIVESL
CALVGVPALKRLDASGAVQESRVRMPTPLPSPSPSQSPPSETGGGGEGGE
GWAKTVAAAANQSAAVGRPSSADGDNSADSGRVAQGSSNATAAAAAAAKS
VLVHGRPAQQAVVAVASAKERLLMETRQALSISSSRLRDGGGGGAGVPTR
CFSSSSSSSARAEQGAGAAASAAAGAAGASQPSRARAMTGPAAAGAAATT
AAATAAVASGSANDHGKKRHSYDARRINRTVSFTCTKSASGVAGNGNGRA
PPSYSLVSKGVFGTTSTSTTAPSSSSESTADPDERRASPCSSSSGGGGQR
QAVGGASGGGGSMRGALSRAGAQDDDAASALGLLSPGAFKGDVAAMVAKL
DKQQQKRPLEERAGRERGGSTSTSSSPRVVVVPSSKPQLVGTTAGGGSPR
GEDVEAPRQEPGGDAEKGKEQEREQGGQEQAPQTPPLVPRSSSPSSSSLS
LREEEWRMPPVLLTALEANGVTHPTPLQEAVWKGGRGRARADLIVHGRPG
DETATAFCVPVLERVLERYPTSLAPKGVSAEMSARAPTSEAAIPPPESQV
YELVALVLTRTREMAADIAETLARLGQNITSLSVATLIGGVPVAENHRAL
ADGCNVAVGTPGRVKFLMKEGALKVSASKTLVLDSADWLMAPVFEEDVGW
IAARFPKDKQVLAFSGADPKTYEAGLTALVGSSGMTPIGCSCPVDSGCAS
TAMVLEQGEALAAALTGAGGAAAAAAAAAVGGLSPVQGAAERNAVAAAAV
SADAGGGESDARAAGSVTTATACAPSAPAAVAAAAAAGGGGEDSTRGRRR
GHPHAHAPHPTTCATGPSRFEAGTRVAVGGVIRPPSSTASPAPEGRKVSP
IRTLGMMREESARRAQGLGTHGSHMVGGAGWMPPQATSAMATGLPPSFLA
RGSNARGGKGVSVGSGGGGGGSSTTSTSSTCSAFRARVRSSTENEIYGAW
CA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase