prot_C-linearis_contig86.16211.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig86.16211.1
Unique Nameprot_C-linearis_contig86.16211.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length390
Homology
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A6H5KZG9_9PHAE (Protein-serine/threonine phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG9_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 5.570e-130
Identity = 221/343 (64.43%), Postives = 253/343 (73.76%), Query Frame = 0
Query:   49 SAEANGSSGHPSAAPTSVAAAPGTSWSRMNGNLQPGSXXXXXXXXXXXXXXXXNVFSGSSSNSPPAVSLPSSNPVYAAPKRAKLGLGELDGWRTTADEVLLKAGIGEGGRGEAGSRSRSDARGVPAQGGXXXXXXXQPGRRK--AAAKSKRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVCHV 389
            +A +NGSS HP AA     AA GT+ SRMNG    G                 NVF+ SS +     S  SS P  +A KR KLG    D WR TADEVL+KAG+ EGG  E  SR+  D  G   + G       QPG  K  AAA+SKRRFAVVC+ANFNRSMMAH+LL++HNF++ESYGT R++RLPGKDIASPEVFPFGTPYRD++D LK KDEA F +NNLL L ARNA +KAAPQRFQ+IEGPDMADFDVVLCFE RVFY VVEDLQSRDPETFKPLHVINMTIKDSFEESAAA+ +VLELCR LDG++ L+D+ AGVLE FTRK+KR+VLHQVCHV
Sbjct:   70 AAVSNGSSNHPPAAFAPATAAVGTA-SRMNGAGDGGGA---------------NVFTASSYSERAPSS--SSTPTSSAMKRPKLGYEHPDNWRATADEVLVKAGL-EGGDKEGKSRA-GDEEGSSTRRGNDKEKQQQPGATKTMAAARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEDLQSRDPETFKPLHVINMTIKDSFEESAAAADSVLELCRMLDGVSQLDDETAGVLEVFTRKTKRTVLHQVCHV 392          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: D8LSD4_ECTSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD4_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.880e-74
Identity = 140/224 (62.50%), Postives = 162/224 (72.32%), Query Frame = 0
Query:  102 NVFSGSSSNSPPAVSLPSSNPVYAAPKRAKLGLGELDGWRTTADEVLLKAGIGEGGRGEAGSRSRSDARGVPAQGGXXXXXXXQPGRRKAAAKSKRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPET 325
            NVF+ SSS++    S  SS    +A KR KLG    D WR TADEVL+KAG+   G+ E       +         XXXXXXX        A+SKRRFAVVC+ANFNRSMMAH+LL++HNF++ESYGT R++RLPGKDIASPEVFPFGTPYRD++D LK KDEA F +NNLL L ARNA +KAAPQRFQ+IEGPDMADFDVVLCFE RVFY VVE   S  PET
Sbjct:   11 NVFTASSSSARAPSS--SSTATSSAMKRPKLGYEHPDNWRATADEVLVKAGLERVGKEERSRAGDEEGSXXXXXXXXXXXXXXXXXXXXXXARSKRRFAVVCSANFNRSMMAHKLLKEHNFQVESYGTGREVRLPGKDIASPEVFPFGTPYRDIFDKLKAKDEALFSQNNLLPLVARNAMVKAAPQRFQEIEGPDMADFDVVLCFETRVFYLVVEGTCS--PET 230          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A6H5JLZ3_9PHAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLZ3_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 1.620e-64
Identity = 101/178 (56.74%), Postives = 138/178 (77.53%), Query Frame = 0
Query:  212 MAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVCHV 389
            MA  LL++H+ R +S+GT R++RLPGKD  SP+ FPFGTPY ++ D L R++EA F +N++L L  RNAT K AP+R+Q ++G  +A FDVV+CFE+RVF  VVEDLQ RDP+TFKPLHV++MTI+DS  +SAAA+G+VL+LC+ L+    L+  AA +L  F  +SKR+VLHQVCH+
Sbjct:    1 MAEILLKEHDMRAQSFGTGREVRLPGKDSKSPQSFPFGTPYVEIRDFLARQNEALFRRNSVLGLLERNATTKRAPERWQSLDGGHVASFDVVVCFESRVFDLVVEDLQQRDPDTFKPLHVVSMTIRDSANDSAAAAGDVLDLCKMLEDCDDLDSNAAELLNDFRIRSKRTVLHQVCHI 178          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: C0PT75_PICSI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Picea sitchensis TaxID=3332 RepID=C0PT75_PICSI)

HSP 1 Score: 174 bits (442), Expect = 1.680e-49
Identity = 86/193 (44.56%), Postives = 126/193 (65.28%), Query Frame = 0
Query:  196 KRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQD--IEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQV 386
            K R A+VCA+N NRSM AH LL+KH F + SYGT   ++LPG  I  P V+ FGTPYR ++D LKRKD   + +N LL++  RN  +K APQR+Q+  ++GP    FDVV  FE RVF  V+EDLQ+R+P   + + V+N+ +KDS EE+A  +   L+LC+ L+     ED+   ++  F R+ +R +++ +
Sbjct:    2 KLRHAMVCASNQNRSMEAHALLKKHGFDVSSYGTGAHVKLPGPSIREPNVYDFGTPYRRMFDDLKRKDPELYKRNGLLQMLKRNLNVKMAPQRWQENAVDGP----FDVVFTFEERVFDMVIEDLQNREPILMRSVLVVNLDVKDSHEEAAVGARLALDLCQKLEAANSWEDEIDDIVMRFERQHRRKLIYTI 190          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A835Z2K1_9STRA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K1_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.630e-48
Identity = 78/189 (41.27%), Postives = 123/189 (65.08%), Query Frame = 0
Query:  201 VVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVCHV 389
            +VC++N NRS++   +L K N  + S+G   D++LPG+    P VFPFGTPY +++D L   D+  + +N +LRL AR+A  K  P+R+QD+    +  +DVV+CFE R+F   V+DLQ RD   FKP+ +I++ +KD+ +++  A  +V  LC  L+    LE   +G++EAF   +KR++LHQVCH+
Sbjct:    1 MVCSSNVNRSVLGQIVLEKMNMAVSSFGVGTDVKLPGRSRGEPAVFPFGTPYIEMHDILWAADKQLYTRNGVLRLLARDACTKRHPERWQDLPSAAVVAYDVVICFENRIFDICVQDLQDRDALDFKPISLISVPVKDTPQDAEEAMEDVTSLCEMLEACEDLESDVSGIVEAFQETTKRAILHQVCHL 189          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A1D1YY61_9ARAE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YY61_9ARAE)

HSP 1 Score: 170 bits (431), Expect = 7.250e-48
Identity = 81/191 (42.41%), Postives = 123/191 (64.40%), Query Frame = 0
Query:  196 KRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQV 386
            K R+A+VC++N NRSM AH L+++  F + SYGT   ++LPG  +  P ++ FGTPY+ +YD L+RKD   + +N +L +  RN+TIK APQR+QD        FDVVL FE +VF  V++DL +RD    KP+ VIN+ +KD+ EE+A  +   L+LC+ L+     ED    ++ AF R+ +R +L+ +
Sbjct:    2 KLRYAMVCSSNQNRSMEAHSLMKRQGFDVSSYGTGAHVKLPGPSLREPNIYDFGTPYKHMYDELRRKDPDLYKRNGILPMLKRNSTIKLAPQRWQD--NVSDGSFDVVLSFEEKVFDMVLDDLHNRDHSLMKPVLVINLDVKDNHEEAAGGAKLALDLCQELEATDCWEDTIDNIVAAFEREHRRKLLYSI 190          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A7I8JY95_SPIIN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8JY95_SPIIN)

HSP 1 Score: 168 bits (426), Expect = 4.010e-47
Identity = 81/191 (42.41%), Postives = 124/191 (64.92%), Query Frame = 0
Query:  196 KRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQV 386
            K R+A+VC++N NRSM AH L+++  F + SYGT   ++LPG  +  P V+ FGTPY+ +YD L+RKD   + +N +L +  RN+ IK APQR+QD     +  FDVVL FE +VF  V++DL +R+    +P+ +IN+ +KD+ EE+AA +   L+LC+ L+     ED    V+ AF R+ KR +L+ +
Sbjct:    2 KLRYAMVCSSNQNRSMEAHSLMKRQGFDVSSYGTGGHVKLPGPSLREPNVYDFGTPYKQMYDELRRKDPDLYKRNGILPMLKRNSGIKLAPQRWQDNSADGI--FDVVLTFEEKVFDLVLDDLNNREHSLMRPVLIINLEVKDNHEEAAAGAKVALDLCQELEATDCWEDSIDSVVTAFERQHKRKLLYSI 190          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: UPI00053FFF3D (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FFF3D)

HSP 1 Score: 168 bits (426), Expect = 4.010e-47
Identity = 78/191 (40.84%), Postives = 125/191 (65.45%), Query Frame = 0
Query:  196 KRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQV 386
            K R+A+VC++N NRSM AH +++K  F + SYGT   ++LPG  I+ P V+ FGTPY+ ++D L+RKD   + +N +L +  RN+++K APQR+QD     +  FDVV+ FE +VF  VVEDL +R+P   KP+ +IN+ +KD+ EE+A  +   ++LC+ +D     ED    ++ AF R  +R +++ +
Sbjct:    2 KLRYAMVCSSNQNRSMEAHFIMKKQGFDVSSYGTGAHVKLPGPSISKPNVYEFGTPYKQMFDELRRKDPELYKRNGILPMLKRNSSVKLAPQRWQDNAHDGV--FDVVITFEEKVFDMVVEDLYNREPVLMKPIVIINLEVKDNHEEAAIGARLTMDLCQEIDATESWEDNIDEIIAAFERHQRRKIVYTI 190          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A7S0QYP3_9CHLO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QYP3_9CHLO)

HSP 1 Score: 168 bits (425), Expect = 5.820e-47
Identity = 84/192 (43.75%), Postives = 124/192 (64.58%), Query Frame = 0
Query:  196 KRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVC 387
            K+RFA+VCA+N NRSM AH +L+ +NF++ SYG    ++LPG +  SP  +PFGTPY+ +YD LK+KDE  +++N LL +  RN T+K AP+R+QD    +   FDVVL FE  VF  VVEDLQ+RD  T   + V+N+ +KDS +E+A A+   + +C  L+     E +   V++ F +   R  L+ +C
Sbjct:    5 KKRFAMVCASNQNRSMEAHCMLKNNNFQVSSYGVGAHVKLPGPNQKSPNTYPFGTPYQYIYDDLKKKDEELYIRNGLLPMLERNITVKTAPERWQD----NRDQFDVVLTFEESVFEKVVEDLQNRDQSTGASVLVVNLDVKDSPQEAALAAPLAMNICEMLEASEDWESEVDLVVDRFQQTYGRRPLYTIC 192          
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Match: A0A061RLN1_9CHLO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RLN1_9CHLO)

HSP 1 Score: 167 bits (423), Expect = 1.260e-46
Identity = 80/193 (41.45%), Postives = 123/193 (63.73%), Query Frame = 0
Query:  195 SKRRFAVVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGTPYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADFDVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNVLELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVC 387
            S  R+A+VCA+N NRSM AH LL++HNFR+ SYG  + ++LPG     P V+ FGTPY+ +Y+ L  KD   + +N LL++  RN  +K AP+R+QD        +DVV+CFE RVF + V+DLQ R+    + + V+N+ +KD+ EE+A A+ + L LC+ LD     E++   +L  F +++ R  L+ +C
Sbjct:    7 SNLRYAMVCASNQNRSMEAHALLKEHNFRVGSYGVGQHVKLPGASAKEPNVYGFGTPYKRIYEELSAKDPELYTRNGLLKMLHRNMGVKTAPERWQDCRDR----YDVVVCFEERVFDACVDDLQKREQSLCRSVLVVNLEVKDNHEEAANAAPHALRLCQMLDASEDWEEEIDAILNVFEKETGRRPLYTIC 195          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig86.16211.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZG9_9PHAE5.570e-13064.43Protein-serine/threonine phosphatase n=1 Tax=Ectoc... [more]
D8LSD4_ECTSI1.880e-7462.50RNA polymerase II subunit A C-terminal domain phos... [more]
A0A6H5JLZ3_9PHAE1.620e-6456.74RNA polymerase II subunit A C-terminal domain phos... [more]
C0PT75_PICSI1.680e-4944.56RNA polymerase II subunit A C-terminal domain phos... [more]
A0A835Z2K1_9STRA1.630e-4841.27RNA polymerase II subunit A C-terminal domain phos... [more]
A0A1D1YY61_9ARAE7.250e-4842.41RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7I8JY95_SPIIN4.010e-4742.41RNA polymerase II subunit A C-terminal domain phos... [more]
UPI00053FFF3D4.010e-4740.84RNA polymerase II subunit A C-terminal domain phos... [more]
A0A7S0QYP3_9CHLO5.820e-4743.75RNA polymerase II subunit A C-terminal domain phos... [more]
A0A061RLN1_9CHLO1.260e-4641.45RNA polymerase II subunit A C-terminal domain phos... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 198..388
e-value: 1.6E-59
score: 200.7
IPR006811RNA polymerase II subunit APANTHERPTHR20383FAMILY NOT NAMEDcoord: 195..388
NoneNo IPR availableGENE3D3.40.50.2300coord: 197..268
e-value: 2.8E-10
score: 42.3
NoneNo IPR availableGENE3D3.40.50.2300coord: 269..389
e-value: 5.1E-28
score: 99.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig86contigC-linearis_contig86:208768..213080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig86.16211.1mRNA_C-linearis_contig86.16211.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig86 208309..227639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig86.16211.1 ID=prot_C-linearis_contig86.16211.1|Name=mRNA_C-linearis_contig86.16211.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=390bp
MKRARDGQQYQQEEQEIPPPPPPPRKKKFFPAAEQDIPPPPPPRKKKDSA
EANGSSGHPSAAPTSVAAAPGTSWSRMNGNLQPGSGSGGGGSGSGGAGSG
ANVFSGSSSNSPPAVSLPSSNPVYAAPKRAKLGLGELDGWRTTADEVLLK
AGIGEGGRGEAGSRSRSDARGVPAQGGGGRGEKGQPGRRKAAAKSKRRFA
VVCAANFNRSMMAHELLRKHNFRIESYGTSRDLRLPGKDIASPEVFPFGT
PYRDLYDTLKRKDEAFFLKNNLLRLAARNATIKAAPQRFQDIEGPDMADF
DVVLCFEARVFYSVVEDLQSRDPETFKPLHVINMTIKDSFEESAAASGNV
LELCRTLDGLTVLEDKAAGVLEAFTRKSKRSVLHQVCHV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA