prot_C-linearis_contig85.16159.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig85.16159.1
Unique Nameprot_C-linearis_contig85.16159.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length412
Homology
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BLAST of mRNA_C-linearis_contig85.16159.1 vs. uniprot
Match: A0A6H5JGX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.480e-54
Identity = 152/253 (60.08%), Postives = 169/253 (66.80%), Query Frame = 0 
Query:   85 PPTLMMERGGNSRLSSRLRKFNNPAP--------TAPTPNIKTEERTTGSRTESISGRGKTCSHENEDGSSTCTRRPTFGLPGDRRAFRCASHKLKGHVDITSRKCESEGCNRIPSFRFQPAGGSQGAKKGRVRFCAQHKQEDMQDYHKEARGCRFAAPGEDGGGRCNRNSSFGFRGGKRTRCARHKEEGMINLNGPRCRGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIPSYNFDAVG 329
            PPT   E G  SRL  RLRK+NNPAP        T P PN+K EE        +I  R KTC    +DGS  C RRP+FG PGD+RA RCASHKL+GH DITSR+C+ EGC+RIPS    P G S      R+RF          DYHK AR CR A  G +    CNRNSSFGF+GGKR  CA+HK++GMINLN PRCRG E      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIPSYN+D VG
Sbjct:   40 PPTPATEVGSRSRL--RLRKYNNPAPPSAHVPQQTNPAPNLKREE----GSARAIGSRTKTCDQMEDDGSK-CLRRPSFGFPGDKRASRCASHKLEGHEDITSRRCDGEGCSRIPSM---PGGNS------RIRFXXXXXXXXXXDYHKGARSCRVAPGGFNA---CNRNSSFGFKGGKRISCAQHKQKGMINLNTPRCRGPECYLTPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRIPSYNYDMVG 273
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGX4_9PHAE3.480e-5460.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:375258..377877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16159.1mRNA_C-linearis_contig85.16159.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig85 374575..378258 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig85.16159.1 ID=prot_C-linearis_contig85.16159.1|Name=mRNA_C-linearis_contig85.16159.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=412bp
MMPTGRAVGISPPPPAVAAVGIHPPAAAEISPPGHRMSRMPPPPRQNSPR
GAGSSRTSVGIQNRSTSRSNANHSHDSNTNSSLGPPTLMMERGGNSRLSS
RLRKFNNPAPTAPTPNIKTEERTTGSRTESISGRGKTCSHENEDGSSTCT
RRPTFGLPGDRRAFRCASHKLKGHVDITSRKCESEGCNRIPSFRFQPAGG
SQGAKKGRVRFCAQHKQEDMQDYHKEARGCRFAAPGEDGGGRCNRNSSFG
FRGGKRTRCARHKEEGMINLNGPRCRGLECNLTPYFGQRGSTPAFCATHK
ETGMVNLISKRCEEEPCDRIPSYNFDAVGAKAIYCNTHKGEGMINVRHPR
CANPACKRQPSFGVPGEGPGKGKAVFCVEHRNPGMVDVKNNYKRKKLKRK
KTGSDEVDSPE*
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