prot_C-linearis_contig84.16135.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16135.1
Unique Nameprot_C-linearis_contig84.16135.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length494
Homology
BLAST of mRNA_C-linearis_contig84.16135.1 vs. uniprot
Match: A0A6H5K822_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K822_9PHAE)

HSP 1 Score: 549 bits (1415), Expect = 8.630e-190
Identity = 324/420 (77.14%), Postives = 341/420 (81.19%), Query Frame = 0
Query:   13 GATITLLVLGSACFLGAAEQPSWGWNGXXXXXXXXXXXXXXQPTDVGDTWYSGGED---QWAPAGNGGDQYPYAEEEPYG-YPSAPPPPGGGQRDWDGDSGVRAGGRISSSKSKARRRXXXXXXXXXXXXXXXXXRAGD--DGFDEEDGGERGDLVQEYMQSLKGRVVLSGGASVAGAALGAIISKSTIQRTPVMSIVGLVVGLVLSVARGAFGDLFRALGLASVLAVTRSHRLSDEYPFLPYARRALVMLPRRPFPPAENPWKYKRSDALAELEEAGVA-DDGNLPAEFSMAKSLLSVAFLGGFAGYIVSQFPFVFLPTFMLALGGGGFLAYLATTRNARGDLTRLLGMRTVAFLGLVSEINSDVALSTKARVVGSICFSKAMCWDSKYHIKDRVVVMLTNLYAAVAKLVGRVQREAGD 425
            GAT  LLVL SAC L A EQPSWGWNG              QPTD  D WY GG D   QWAP   GG+QYPYAEEE YG YP A    G G ++W GD+GV A              XXXXXXXXXXXXXXXXX AGD  DGFDEEDG  R DLVQEY QS KGR+VLSGGASVAGAALG IISKSTIQRTPVMS+VGL+VGLVLSVARGAFGDLFRALGLASVLAV+RS RLS EYPFLPYARRALVMLPRRPFPPAENPWKYKR+DA+AELE+AGV  D GNLPAEFSMAKSLLSVAFLGGFAGY+VSQFPFVFLPTFMLALGGGGFLAYLAT +NARGDLTRLLGMRTVAFLGLVSEI+SDVALS KA+VVG ICFSKAM WD KYHIKDRVVV+LTNLYAA  KLV RVQR+A D
Sbjct:   41 GATALLLVLVSACSLTAGEQPSWGWNGGGPPPPRGSTKHPRQPTDEADAWYPGGADATDQWAPGRGGGEQYPYAEEEGYGGYPQA----GAGGQEWVGDNGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEDDGFDEEDGVVREDLVQEYAQSFKGRLVLSGGASVAGAALGVIISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATMKNARGDLTRLLGMRTVAFLGLVSEIDSDVALSAKAKVVGGICFSKAMFWDRKYHIKDRVVVLLTNLYAAAVKLVRRVQRDASD 456          
BLAST of mRNA_C-linearis_contig84.16135.1 vs. uniprot
Match: D8LMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMQ8_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 2.300e-122
Identity = 189/209 (90.43%), Postives = 199/209 (95.22%), Query Frame = 0
Query:  189 IISKSTIQRTPVMSIVGLVVGLVLSVARGAFGDLFRALGLASVLAVTRSHRLSDEYPFLPYARRALVMLPRRPFPPAENPWKYKRSDALAELEEAGVA-DDGNLPAEFSMAKSLLSVAFLGGFAGYIVSQFPFVFLPTFMLALGGGGFLAYLATTRNARGDLTRLLGMRTVAFLGLVSEINSDVALSTKARVVGSICFSKAMCWDSKYH 396
            +ISKSTIQRTPVMS+VGL+VGLVLSVARGAFGDLFRALGLASVLAV+RS RLS EYPFLPYARRALVMLPRRPFPPAENPWKYKR+DA+AELE+AGV  D GNLPAEFSMAKSLLSVAFLGGFAGY+VSQFPFVFLPTFMLALGGGGFLAYLATT+NARGDLTRLLGMRTVAFLGLVSEINSDVALS K +VVG ICFSKAM WD KYH
Sbjct:    1 MISKSTIQRTPVMSLVGLLVGLVLSVARGAFGDLFRALGLASVLAVSRSRRLSAEYPFLPYARRALVMLPRRPFPPAENPWKYKRADAIAELEDAGVPLDAGNLPAEFSMAKSLLSVAFLGGFAGYLVSQFPFVFLPTFMLALGGGGFLAYLATTKNARGDLTRLLGMRTVAFLGLVSEINSDVALSAKGKVVGGICFSKAMFWDRKYH 209          
BLAST of mRNA_C-linearis_contig84.16135.1 vs. uniprot
Match: A0A835Z6C8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C8_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.590e-44
Identity = 102/231 (44.16%), Postives = 141/231 (61.04%), Query Frame = 0
Query:  157 ERGDLVQEYMQSLKGRVVLSGGASVAGAALGAIISKSTIQRTPVMSIVGLVVGLVLSVARGAFGDLFRALGLASVLAVTRSHRLSDEYPFLPYARRALVMLPRRPFPPAENPWKYKRSDALAELEEAGVADDGNLPAEFSMAKSLLSVAFLGGFAGYIVSQFPFVFLPTFMLALGGGGFLAYLATTRNARGDLTRLLGMRTVAFLGLVSEINSDVALSTKARVVGSICFSK 387
            E  D+V  Y QS KG+ +++ G+ + GA +G  IS+ST+ +TP M++ GL +GL+LS+ARGAFGDL RALGL + L V RS  +  +YP LP  + A+ M PRRPFPP          ++L+               EFS  K+LL++AF+GG AGY  S+ P   LP  + AL   G  AY  T R + GDL RL GMR  A LG+V+ ++++V    KARVVG +CF+K
Sbjct:  133 EAPDMVVVYSQSAKGKAIVTVGSGLVGAVIGVAISESTVHKTPSMALAGLFLGLMLSIARGAFGDLLRALGLGAYLTVVRSASIGSKYPILPQLKAAMHMGPRRPFPPVPI------GESLSRYRPVPGGP------EFSTMKALLAMAFMGGMAGYFGSK-PVPLLPEVLGALATAGCAAYATTLRTSAGDLARLGGMRFAALLGVVTGVDAEVRAWDKARVVGRLCFAK 350          
BLAST of mRNA_C-linearis_contig84.16135.1 vs. uniprot
Match: A0A7S2A8I8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8I8_TRICV)

HSP 1 Score: 124 bits (310), Expect = 3.360e-28
Identity = 95/275 (34.55%), Postives = 135/275 (49.09%), Query Frame = 0
Query:  144 RAGDDGFDEED----GGERGDLVQEYMQSLKGRVVLSGGASVAGAALGAIISKSTIQRTPVMSIVGLVVGL--VLSVARGAFGDLFRALGLASVLAVTRSHRLSDEYPFLPYARRALVMLPRRPFPPA-----------ENPWKYKRSDALAELEEAGVADDGNLPAEFSMAKSLLSVAFLGGFAGYIVSQFPFVFLPTFMLALGGGGFLAYLATTRNARGDLTRLLGMRTVAFLGLVSEINSDVALSTKARVVGSICFSKAMCWDSKYHIKDRV 401
            R GDD  D +D    G  R D V     +  GR  L   ++ AG  +G  +++ST+ R    ++      L   L+  R  +G+L ++LG A VL   R+  +   YP   + +  L M  R PFPP            ENPW Y R  A  +L       D     EFSM K  ++ A +GG  G   S  P +  P++M A GG   LA+L+T R+ARGDL R  GMR VA L  + E+N+++ ++ KA  VG   F + M  D K+ IKDR+
Sbjct:   16 RRGDDYDDYDDDAMSGSARRDEVARLTSTKSGRAKLVLSSAAAGYGIGTFLARSTLPRGAADTVGPASAALFATLTFLRNDYGELSKSLGAALVLVAGRAGGVRRRYPTKSHLKSMLAMGRRTPFPPLTSEPDDEGVVNENPWTY-RPRARRDLPPDAEGPDP----EFSMIKCAIAAAAVGGICG---SDLPLI--PSWMGAAGGAAALAFLSTLRSARGDLARTAGMRVVAILTELLEVNNELGVAGKAATVGGKIFDRVMILDRKHRIKDRL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16135.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K822_9PHAE8.630e-19077.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMQ8_ECTSI2.300e-12290.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z6C8_9STRA5.590e-4444.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2A8I8_TRICV3.360e-2834.55Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 316..320
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 173..194
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 220..296
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 297..315
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 342..493
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 195..199
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..172
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 321..341
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..219
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..25
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.701
NoneNo IPR availableTMHMMTMhelixcoord: 173..191
NoneNo IPR availableTMHMMTMhelixcoord: 198..220
NoneNo IPR availableTMHMMTMhelixcoord: 318..340

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:735362..739255 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16135.1mRNA_C-linearis_contig84.16135.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 734972..739274 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16135.1 ID=prot_C-linearis_contig84.16135.1|Name=mRNA_C-linearis_contig84.16135.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=494bp
MGSPAARGRQHCGATITLLVLGSACFLGAAEQPSWGWNGNGPPPRGSGKQ
QQQQPTDVGDTWYSGGEDQWAPAGNGGDQYPYAEEEPYGYPSAPPPPGGG
QRDWDGDSGVRAGGRISSSKSKARRRGKRRGRSGDGGSGGGGSRAGDDGF
DEEDGGERGDLVQEYMQSLKGRVVLSGGASVAGAALGAIISKSTIQRTPV
MSIVGLVVGLVLSVARGAFGDLFRALGLASVLAVTRSHRLSDEYPFLPYA
RRALVMLPRRPFPPAENPWKYKRSDALAELEEAGVADDGNLPAEFSMAKS
LLSVAFLGGFAGYIVSQFPFVFLPTFMLALGGGGFLAYLATTRNARGDLT
RLLGMRTVAFLGLVSEINSDVALSTKARVVGSICFSKAMCWDSKYHIKDR
VVVMLTNLYAAVAKLVGRVQREAGDGDDDDDEDYVNSDAGGGALSEDVVE
RQRPRNRRRRQSPDEPPMPTSPPPPPPPPLGYADEGSYQGGGW*
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