prot_C-linearis_contig84.16111.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig84.16111.1
Unique Nameprot_C-linearis_contig84.16111.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length603
Homology
BLAST of mRNA_C-linearis_contig84.16111.1 vs. uniprot
Match: A0A6H5KU66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU66_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 4.970e-14
Identity = 184/507 (36.29%), Postives = 216/507 (42.60%), Query Frame = 0
Query:  124 SARQRKQNGGRGVDSLLQDLVFGRKNTGRGRSKSVHGSNPAAGGGDTAGGWLKSRAARTAVKDGRGGGGGSQSTPVAQYSSGYSVHGSSVHSSASAPGTGSATGGAESSRTAGRAGGGGNLDPDSNAPTPRMGTATAT--AAAVPPKLSTPRGDREEYSFGADYGSFGAATTTGSTTTEEGFTVESGRSNSGSSVDNGRXXXXXXXXXXXXXXXXXXXXRERR-------------------------GSADSIVTDGEASSSHG-GDGXXDSGAAEDGEEHGAGKDKPEGGARRGFGGVLEVAEAALAAXXXXXXXXXXXXXXXXXXXGVDGDSLETLPLSHPLLYVGSSSTDAGAGRERSSEAAISPPSVKGDSGGGGSTRSRGQSPHGFEGAEGAVSF---SDEPEQ---DLDGATGMLHL-----DPAFALAXXXXXXXXXXXXXXXAADIEAERQRTSRIYCEACPADGMVEFMAKRGMRGGGASWNGLVTAVGESLIPFVP 591
            S  +R++N G+ VD+++Q+LVFGRKN    RSKSV   +PA G G TA  WLK + AR A+  G GG G        +Y    SV   S   S+               RTA RAG G N DPDSNA TPR G  + T   AAVPP+LS+    REE                                          XXXXXXXXXXXXXXXXXXXX                             GS DS+ TD  ASS HG G  XXD   ++  EE G    +P      G  GVL    AA   XXXXXX                    E+L                  G ER   A  SP    G  G GGS R RG S +       ++S    SD+ E+    L G  G         DPAFA A                A +EAER RTSR+YCEACP DG+ EF+A   MRGGG SW GLVTAV    +  +P
Sbjct:   35 SVSERRKNVGKVVDTVVQELVFGRKN----RSKSVF--SPAKGTGVTAT-WLKDKNARVAISKGGGGAGEGHRGSAGRY---QSVPSPSYAESSGHGXXXXXXXXXXXWRTAARAGDGSNADPDSNATTPRSGADSLTPLGAAVPPRLSS--SPREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDVGRGSGSIDSLATDTAASSLHGYGXXXXDWDVSK--EEDGGRGGEP------GLDGVL----AAXXXXXXXXXEVAGGARVSITPANTQHHVSESLXXXXXXXXXXXXXXXXXXGFERGGPATGSP--RLGGGGYGGSRRPRGMSLNDVRLPPPSLSRRGGSDKEERGAVSLHGRGGXXXXXXEEKDPAFARALAEVAQAEAEIEAAEVAAMEAERLRTSRVYCEACPDDGVTEFLADGEMRGGGPSWKGLVTAVVAEYVHELP 515          
BLAST of mRNA_C-linearis_contig84.16111.1 vs. uniprot
Match: D8LPV6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.160e-9
Identity = 70/151 (46.36%), Postives = 83/151 (54.97%), Query Frame = 0
Query:  139 LLQDLVFGRKNTGRGRSKSVHGSNPAAGGGDTAGGWLKSRAARTAVKDG-----RGGGGGSQSTPVAQYSSGYSVHGSSVH-----------SSASAPGTGSATGGAESSRTAGRAGGGGNLDPDSNAPTPRMGTATAT--AAAVPPKLST 271
            ++QDLVFGR+N    RSKSV   +PA G G TA  WLK + AR A+  G      G GG  QS P   Y+   S HG               + A+ P    A GG+ SSRTA RAGGG N DPDSNA TPR G  + T   AAVPP+LS+
Sbjct:    1 MVQDLVFGRRN----RSKSVF--SPAKGAGVTAT-WLKDKNARVAMSKGGVGAGEGHGGRYQSVPSPSYAD-SSGHGXXXXXXXXXXXXXXXAPATVPSWTDA-GGSHSSRTAARAGGGSNADPDSNATTPRSGADSLTPLGAAVPPRLSS 142          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU66_9PHAE4.970e-1436.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPV6_ECTSI2.160e-946.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 517..544
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 1..79
e-value: 1.8E-5
score: 26.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:469072..475539 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16111.1mRNA_C-linearis_contig84.16111.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig84 468758..475667 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig84.16111.1 ID=prot_C-linearis_contig84.16111.1|Name=mRNA_C-linearis_contig84.16111.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=603bp
MDSSERLDELVARARALFESKHGSSEGCFAAFSPAKINFLGDVIEGSGGL
ALQITLDRRVVVFGRGKVLPEYHFPTGGKRRPPAALGSSPTPLAVVVEGE
GEGEGGDGEVGGGGLAARSSRSGSARQRKQNGGRGVDSLLQDLVFGRKNT
GRGRSKSVHGSNPAAGGGDTAGGWLKSRAARTAVKDGRGGGGGSQSTPVA
QYSSGYSVHGSSVHSSASAPGTGSATGGAESSRTAGRAGGGGNLDPDSNA
PTPRMGTATATAAAVPPKLSTPRGDREEYSFGADYGSFGAATTTGSTTTE
EGFTVESGRSNSGSSVDNGRGGGGGGSGRIGTGGGGGADDRERRGSADSI
VTDGEASSSHGGDGDGDSGAAEDGEEHGAGKDKPEGGARRGFGGVLEVAE
AALAAAKAAAGGAPVGGGSGGGRGGVDGDSLETLPLSHPLLYVGSSSTDA
GAGRERSSEAAISPPSVKGDSGGGGSTRSRGQSPHGFEGAEGAVSFSDEP
EQDLDGATGMLHLDPAFALALAEASQAEAEIEAAEAADIEAERQRTSRIY
CEACPADGMVEFMAKRGMRGGGASWNGLVTAVGESLIPFVPLAPPSTSTN
CH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014721Ribosomal_S5_D2-typ_fold_subgr