prot_C-linearis_contig83.16062.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16062.1
Unique Nameprot_C-linearis_contig83.16062.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length480
Homology
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BLAST of mRNA_C-linearis_contig83.16062.1 vs. uniprot
Match: A0A6H5L9K9_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K9_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 8.290e-47
Identity = 151/337 (44.81%), Postives = 188/337 (55.79%), Query Frame = 0 
Query:  165 GEYSGGAKAINPSGMPELEPKXXXXXXXXEQQVDFDETAFANHEQRMRRAHLQRLGSEEMPAASGRSRQGIGFEHRPSTYRAGSPSHGQDRPTHASKVSMDISSASLLNSSNGRHHRLRSRSASRAGA-GALLSGG----------------RGGETGQQPRSSRKSMPGIGHVMHPRETAAEPPAPLSVEVWKQRAQKRQNLIKALATSQHLSSASASLISTPMASPGSSAGW------NNPSMAG--HTKLGNMTGKLTPPETERPVPFVEDALAMQGATERGIKRFE-AP-SLLGQ-PPKIQDARRPRVQAADNFAAEDSADEDSDDTHSIVSV 473
            G+Y GG  +       + EP+        +    FDE AFA  E+RMR+ HLQRLGS E P   G +RQ                 H   +P   + +   IS ASLLN SN RH R RSR+ASR GA G  +  G                RGG+  Q PR +      I +V+HPRE AA PPAP+  E+W +RAQ R NL+KA+  SQHLSS+S + +    ASP S+  +      N   MAG   T  G  T  +  PETE P+P+ ED LA+QGA ERGIK+FE AP S+ GQ PP++Q ARR  VQAADNFAAEDSADEDSD+T SI+S 
Sbjct: 2463 GKYGGGGVS-----WEDPEPEPPRRQLRPDDYSSFDENAFAQRERRMRQNHLQRLGSAE-PEQRGDARQ----------------DHASSKPRDKNVI---ISGASLLNPSNDRHRRSRSRAASRGGASGTHVFAGDEXXXXXXXXXXXXXXRGGQF-QAPRLAM-----IENVVHPREGAAPPPAPVPTEIWNERAQSRGNLVKAMVASQHLSSSSGTGLRG--ASPRSNTAYGGSNYHNTSGMAGAGSTAGGRGTTGIVSPETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARRAVVQAADNFAAEDSADEDSDETGSIISA 2766
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16062.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9K9_9PHAE8.290e-4744.81GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:554296..557877 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16062.1mRNA_C-linearis_contig83.16062.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 554200..558373 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16062.1 ID=prot_C-linearis_contig83.16062.1|Name=mRNA_C-linearis_contig83.16062.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=480bp
MSAVSSGVSSVIPNEHMSPANVAGSRRSGGCPSQSNPLAASPLLAQPYAY
GGGAQAARFGGSSSSSPLGGGVEVGVLGAGDGLGSSSGGGGNIAGRLVEV
AAGRGWVSSPIDANNAGKEENGVVTTPWDVRSSSGSGLGNGSGVSGGGAA
SCRPGDGPGFVGDDGEYSGGAKAINPSGMPELEPKPQPQPQPREQQVDFD
ETAFANHEQRMRRAHLQRLGSEEMPAASGRSRQGIGFEHRPSTYRAGSPS
HGQDRPTHASKVSMDISSASLLNSSNGRHHRLRSRSASRAGAGALLSGGR
GGETGQQPRSSRKSMPGIGHVMHPRETAAEPPAPLSVEVWKQRAQKRQNL
IKALATSQHLSSASASLISTPMASPGSSAGWNNPSMAGHTKLGNMTGKLT
PPETERPVPFVEDALAMQGATERGIKRFEAPSLLGQPPKIQDARRPRVQA
ADNFAAEDSADEDSDDTHSIVSVGSSLRR*
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