prot_C-linearis_contig83.16056.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig83.16056.1
Unique Nameprot_C-linearis_contig83.16056.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length571
Homology
BLAST of mRNA_C-linearis_contig83.16056.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 4.860e-94
Identity = 235/563 (41.74%), Postives = 293/563 (52.04%), Query Frame = 0
Query:   10 GLKWLLLWVVVVLGVGKTISRVGSWVLNNACRAWLRRRAVNFSVAGAGYRLRACRLGVVEIDLLAGWLRSRGRLPCLGVVVGGLEVFVEALPPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGSPVAP-----LSSPLWASLATGVLRQCGVTVFGIRAVVDCPENPASSPAAAAAVDSPCAKAARLAARRADGXXGGVSTELFISCVEAFAKPLERGGAGIKLVIRIEQGPEQALVSSSRGTANGVAVGGDITLEVDLISAPKRPELPLGSSHLVSAVRVTSSSLRGVVHEGDIKAFESWRDLFVSSR---CGAPGPAPAKASVDLRQGESGAGQARSEDARGGDAAAEDDTTGXXXXXXXXXXXXXXXXXXXXASIVDPEPYFALPP--MLSPVFSLEAAFEALRLEVTGDAVGEVGGIAEIGGFDGAEGVEPEQRSRSEAAEVLHRKADGVSAAVGGERDE-GLPLQAESADTPRPGQPGTFGRRWRRSQVRRRSSAPNAVVEVKGVHAGVKTVFSSQD----VGSAKVRVALKWSSAVLV 557
             LKW LL  V+VLGVGK I+RV SWV NNAC+ WLRRR V+FSVAGA Y+L ACRLGVVE+DL +GWLRSRGRLPCLGVV+  L++ VEA  P                                               A SP A      L+S LW +LAT VL QCGVTVFGIR V+D   +      +A   D    +  R    RADG    VSTE+F+SCVEAFAKPLERGG G KL +RIEQ PE  ++S+S GT +GV V GD+TLEVDL+ AP R +       LVSAVRV S+SLRGV+ EGD++AF+SWR +FV+     CGA  P           G  G G+  +    GGDA  E +  G                     +  D E     PP   LSP  SLEA+ E LR+EV GD      G  + G  +G +G+ PE        E+     +G S  +   R+  GLP+     D           +R +    RR++ AP+ V EVKG+  GV +     D    VG+  V VA+KWSS  L+
Sbjct:   10 SLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSVAGASYKLSACRLGVVEVDLFSGWLRSRGRLPCLGVVLASLDLRVEASFPEGHHDGDAAAAVGKAEARPTGPTPAS---------------------ASSPAASELKTLLTSLLWENLATWVLSQCGVTVFGIRVVLDYRGS------SAGVADCRTGRGVRS---RADGCVF-VSTEVFVSCVEAFAKPLERGGGGTKLAVRIEQDPEHPILSTSLGTTDGVTVDGDVTLEVDLVHAPIRGDRRGIGCRLVSAVRVVSTSLRGVIREGDMRAFDSWRGIFVAPERKSCGAADP----------PGGDGFGRPGTGRDAGGDAGEERNAAGGGV-----------------GTAADEE---VSPPWSFLSPTLSLEASLEGLRVEVVGDEEARCVGAGDGGEEEGRDGLVPEPVGGLGGQELGASDEEGDSGLLSRPREPVGLPVGDRGRDD------DAHAQRQKGCLQRRKADAPSVVAEVKGLRVGVDSAGVDSDDNRAVGTRTVSVAVKWSSVALL 505          
BLAST of mRNA_C-linearis_contig83.16056.1 vs. uniprot
Match: A0A6H5KIC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 2.140e-77
Identity = 225/568 (39.61%), Postives = 276/568 (48.59%), Query Frame = 0
Query:   10 GLKWLLLWVVVVLGVGKTISRVGSWVLNNACRAWLRRRAVNFSVAGAGYRLRACRLGVVEIDLLAGWLRSRGRLPCLGVVVGGLEVFVEALPPAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAGSPVAP-----LSSPLWASLATGVLRQCGVTVFGIRAVVDCPENPASSPAAAAAVDSPCAKAARLAARRADGXXGGVSTELFISCVEAFAKPLERGGAGIKLVIRIEQGPEQALVSSSRGTANGVAVGGDITLEVDLISAPKRPELPLGSSHLVSAVRVTSSSLRGVVHEGDIKAFESWRDLFVSSR---CGAPGPAPAKASVDLRQGESGAGQARSEDARGGDAAAEDDTTGXXXXXXXXXXXXXXXXXXXXASIVDPEPYFALPP--MLSPVFSLEAAFEALRLEVTGDAVGEVGGIAEIGGFDGAEGVEPEQRSRSEAAEVLHRKADGVSAAVGGERDEGLPLQAESADTPRPGQPGTFGRRWRRSQVRR-RSSAPNAVVEVKGVHAGVKTVF----SSQDVGSAK---VRVALKWSSAVLVTG 559
             LKW LL  V+VLGVGK I+RV SWV NNAC+ WLRRR V+FS+AGA Y+L AC+LGVVE+DL + WLRSRGRLPCLGVV+  L + VEA  P                                               A SP A      L+S LW  LAT VL QCGVTVFGIR V+DCPEN A          + C        R A G   GVSTELF+SCVEAFAKPLERGG G +L +RIEQ                 A G D TL +          +   S HLVSAVRV S+SLRGV+ EGDI+AF+SWR +FV+     CGA  P           G  G G+  +    GGDA  E +  G                     +  D E    LPP   LSP  SLEA+ E LRLEV GD      G A+     G +G+ PE      A   L  +  G S   G       P +A        G+      + R+ +++R ++ AP+ V EVKG+  GV         ++ VG+ K   + VA+KWSS  L+TG
Sbjct:   10 SLKWALLCFVLVLGVGKAIARVASWVANNACQVWLRRRPVSFSIAGASYKLSACQLGVVEVDLFSDWLRSRGRLPCLGVVLASLNLRVEASFPEEHHDGDAAAVRKAEVRPTGPTPAS----------------------ASSPAASELKILLASLLWEKLATWVLSQCGVTVFGIRVVLDCPENSAGV--------ADC-----RTGRGAWGGGRGVSTELFVSCVEAFAKPLERGGGGTRLALRIEQ-----------------ARGFD-TLCLQCA------HMCFVSCHLVSAVRVISTSLRGVIREGDIRAFDSWRGIFVAPERKSCGAADP----------PGGDGFGRPATGRDAGGDAGEERNAAGGSV-----------------GTAADKE---ILPPWSFLSPTLSLEASLEGLRLEVVGDEEAGCVGTADGREEGGRDGLVPE------AVRGLGGQELGASDEEGDSGSLSRPHEAAGLTVGDHGRDDDAHVQRRKGRLQRGKADAPSVVAEVKGLRVGVDNAGVVGDDNRTVGTRKASLISVAVKWSSVALLTG 482          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16056.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7K0_ECTSI4.860e-9441.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIC1_9PHAE2.140e-7739.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..571
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..18
NoneNo IPR availableTMHMMTMhelixcoord: 3..25

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:398074..402192 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16056.1mRNA_C-linearis_contig83.16056.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig83 398074..403563 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig83.16056.1 ID=prot_C-linearis_contig83.16056.1|Name=mRNA_C-linearis_contig83.16056.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=571bp
MELLALALIGLKWLLLWVVVVLGVGKTISRVGSWVLNNACRAWLRRRAVN
FSVAGAGYRLRACRLGVVEIDLLAGWLRSRGRLPCLGVVVGGLEVFVEAL
PPAARGGGDAAATPAADGAAARTGAAPAIPKHTTDSGSGSAPPPPPAVVA
GSPVAPLSSPLWASLATGVLRQCGVTVFGIRAVVDCPENPASSPAAAAAV
DSPCAKAARLAARRADGGGGGVSTELFISCVEAFAKPLERGGAGIKLVIR
IEQGPEQALVSSSRGTANGVAVGGDITLEVDLISAPKRPELPLGSSHLVS
AVRVTSSSLRGVVHEGDIKAFESWRDLFVSSRCGAPGPAPAKASVDLRQG
ESGAGQARSEDARGGDAAAEDDTTGGRGGDAAGVGKGANGRPGEGASIVD
PEPYFALPPMLSPVFSLEAAFEALRLEVTGDAVGEVGGIAEIGGFDGAEG
VEPEQRSRSEAAEVLHRKADGVSAAVGGERDEGLPLQAESADTPRPGQPG
TFGRRWRRSQVRRRSSAPNAVVEVKGVHAGVKTVFSSQDVGSAKVRVALK
WSSAVLVTGGGAVCEGRYDND
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