prot_C-linearis_contig82.16008.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig82.16008.1
Unique Nameprot_C-linearis_contig82.16008.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length416
Homology
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BLAST of mRNA_C-linearis_contig82.16008.1 vs. uniprot
Match: A0A6H5KWC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWC2_9PHAE)

HSP 1 Score: 338 bits (867), Expect = 3.930e-110
Identity = 214/405 (52.84%), Postives = 262/405 (64.69%), Query Frame = 0 
Query:   12 VAAAVVAGLCGVGDAFVVGGGRAVAPWRTAHAGTTASTPLCHGSPCGRRPTSTMALRSPLSNIRCGTPKVDQVSRSWGSGPREAGGAVRKGGLHRAXXXXXXXXXXXXXXXAEGERGQEVVAARRGRFARPAAVLRFVREAVEQGARKAGKGTRARIASWRRRVSVAMIGVAAALIVITASAGPAQALFGVNLPSRQQGAPERLTKMPESVYARREELQDFCQTPPRDRLFDFKDLTVYDEVLDDLDMFADNIAPTVGARESFRLKYIRHAEDFLQDEAGDRKNGAYGVARFTLLGTVGLVAVGTVLGSLLWTGRAFLNMAREEEVFLYGEEISVDATEKEEEELDDLDXDLDFDEDDMEDYGTPVSGGGTDPSPPSXXXXSDFGEGGNXXXXXSDA-GDDLLGM 415
            V A V+A +CG GDAFVVG GR +AP R  H  T+A  P C  SP   RP   MA R+ LS+      +  +   +   G RE    + +G +H                  EG    E VAARR RFARPAAVLRFVR+AVE+G   + KGTRAR+A+WRRR+SVA IGVAAA++++TASAGPAQALFG+    R++    RLT MPESVY  RE LQ FC+TP +DRLFD  DLT ++E LD++DMF++ +AP+ GARES RLKY RHAEDF   E G    G++G A F ++G + +V  GTVLG   W  RAF+NMAREEE+FLYGEEISVDATEK +EELDDLD D D D+DDMEDY  P S  G       XXXX   G G +     +D+ GDDLLGM
Sbjct:    9 VLAVVIALICGPGDAFVVGAGRGLAPGRPLHTTTSAFAPACCSSPRRGRPAGGMAFRASLSSTPAFRGRNRKAMSTRRLGCREGERGMNEG-VHYGDAVGGK----------EGGGEGEAVAARRARFARPAAVLRFVRQAVERGVSMSSKGTRARVAAWRRRMSVAFIGVAAAVMMMTASAGPAQALFGIG--GRKEAPVTRLTYMPESVYQEREALQKFCETPQQDRLFDANDLTAFEEELDEIDMFSNKVAPSYGARESLRLKYARHAEDFATMEEGKLTAGSFGFASFAIVGGLAVVVGGTVLGGFTWACRAFMNMAREEEIFLYGEEISVDATEKPDEELDDLDEDFDLDDDDMEDYSAPGSASGAGXXXXXXXXXXS-GSGADGDAGGADSSGDDLLGM 399
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16008.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWC2_9PHAE3.930e-11052.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 349..369
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 30..174
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 324..415
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 197..302
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 175..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 303..323
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 175..197
NoneNo IPR availableTMHMMTMhelixcoord: 301..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:526069..533530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16008.1mRNA_C-linearis_contig82.16008.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig82 525966..534070 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig82.16008.1 ID=prot_C-linearis_contig82.16008.1|Name=mRNA_C-linearis_contig82.16008.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=416bp
MTNPVRIGSAAVAAAVVAGLCGVGDAFVVGGGRAVAPWRTAHAGTTASTP
LCHGSPCGRRPTSTMALRSPLSNIRCGTPKVDQVSRSWGSGPREAGGAVR
KGGLHRAAAREEETTAGGGGGGAEGERGQEVVAARRGRFARPAAVLRFVR
EAVEQGARKAGKGTRARIASWRRRVSVAMIGVAAALIVITASAGPAQALF
GVNLPSRQQGAPERLTKMPESVYARREELQDFCQTPPRDRLFDFKDLTVY
DEVLDDLDMFADNIAPTVGARESFRLKYIRHAEDFLQDEAGDRKNGAYGV
ARFTLLGTVGLVAVGTVLGSLLWTGRAFLNMAREEEVFLYGEEISVDATE
KEEEELDDLDDDLDFDEDDMEDYGTPVSGGGTDPSPPSTPPSSDFGEGGN
AGGGGSDAGDDLLGM*
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