prot_C-linearis_contig80.15891.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15891.1
Unique Nameprot_C-linearis_contig80.15891.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length627
Homology
BLAST of mRNA_C-linearis_contig80.15891.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.290e-7
Identity = 155/499 (31.06%), Postives = 196/499 (39.28%), Query Frame = 0
Query:   28 GAGAAHGVDDSNEVDGVESPPLSWVSAWRAEEIRSNEGRNLARTLSGGCLLTAGKWAGFESGFQGAR--SVSESAGRSSSAAVDPQDLGDPHPANGTEDAPDLRVTRTWPVGVDFSSRTTENYGTVTQSEQRTTERNKESGAYATGDPVTPPPSQVLSPESVESEEDTGNVLVGTE--FSATGSSSEPGPTEEGQSSTSQQPSTSRP---------------------------SACGSAAIE-PAEKTTGLIQVRPTPAPASAPRERQDPPSVRRQTQTP--LLSLSDLGLGSVPVVHSSVSEEPA-PAARRKPAAAVPGAKESHHAQPRNPGHAGSLSSARGERGGTLDARA--GVVLTFPAPGQEASSELSCISWSDRGGAGSDDPSSGDSXXXXXXXXXXXXKSGSIYGVRSGERSSARGGIEGDNGDS-RFSSIGCRGTRCGGSSV--EASGGAVSPTTGREAAHAAPCDSANSIRTRLDAPAMD--GPTLPAC 484
            G+GA  G  D  +V+   SP +SWVS   AE++R N+ R+L RTLSGG +  AG  A   S  +G R   V ++ G SS+  +   DL  P     +   P  R+    P G   SSR       V   +       +E G         PP S    P          +VL GT   +   GS+ +    EE + S SQ                                  S  GS   E P  +      +RP    ASAPRERQ PP   RQT     L S  D G G V V +    +E   PA  R  A     A+E      R  G    +    G   G  DA +  GVVL FP P +  SSELSCISWSDR     DD ++  +               S   +RSG+ + A G    + GD   FS  G R    GGS    E+S G     TG E A      +     TRLD PA+   GP   AC
Sbjct: 1084 GSGARTG--DGGDVN--VSPAVSWVSELGAEDLRFNQRRDLGRTLSGGWMPAAGPGA---SSLRGVRRSDVRDAVGASSAPCLG--DLCSPEIPAASLGVPAARLR---PAGGAGSSRPRFAEEIVAAQQPPLGAVQREEGVDDGAGGRVPPSSPDSVPRGAGGSAIRRDVLGGTVTVWPPLGSTCDVLRDEERRLSVSQPQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMMSYGGSVTSEHPPRRERSENSLRP----ASAPRERQSPPVDHRQTDDSNLLSSFGDNGTGLVVVGNGCGRQESTIPAPLRVSARGT--AEERGSRYERLVGDRSGVPGDDGGEAGRGDAGSHEGVVLAFPTPERAPSSELSCISWSDR----VDDETADGTPQEPPR---------STNDLRSGDEAGAVGTRPEEYGDGLSFSYAGSRRRSRGGSGXXXESSEG-----TGAERASGIARITGLKTNTRLDVPAVGEMGPPADAC 1546          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15891.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMA0_9PHAE7.290e-731.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:486376..488305 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15891.1mRNA_C-linearis_contig80.15891.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 482220..488305 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15891.1 ID=prot_C-linearis_contig80.15891.1|Name=mRNA_C-linearis_contig80.15891.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=627bp
MEEPPQSCGSGDAGESRQGSTRVDCKFGAGAAHGVDDSNEVDGVESPPLS
WVSAWRAEEIRSNEGRNLARTLSGGCLLTAGKWAGFESGFQGARSVSESA
GRSSSAAVDPQDLGDPHPANGTEDAPDLRVTRTWPVGVDFSSRTTENYGT
VTQSEQRTTERNKESGAYATGDPVTPPPSQVLSPESVESEEDTGNVLVGT
EFSATGSSSEPGPTEEGQSSTSQQPSTSRPSACGSAAIEPAEKTTGLIQV
RPTPAPASAPRERQDPPSVRRQTQTPLLSLSDLGLGSVPVVHSSVSEEPA
PAARRKPAAAVPGAKESHHAQPRNPGHAGSLSSARGERGGTLDARAGVVL
TFPAPGQEASSELSCISWSDRGGAGSDDPSSGDSRGSSGSSRRSSKKSGS
IYGVRSGERSSARGGIEGDNGDSRFSSIGCRGTRCGGSSVEASGGAVSPT
TGREAAHAAPCDSANSIRTRLDAPAMDGPTLPACRRSSPSSSSSSSSSLS
LPTPVPGSKGRFTLPTSCRGVPSSSSSSLSASSPSLQTRASGGKGRTPKA
LEGKNGSRIDRCGSDGCSAAAAAAAAAEARVTASGNRQAAAVAAQAAAVA
AATAAARGSPPVAAALGTTAKGLRGG*
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