prot_C-linearis_contig80.15863.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15863.1
Unique Nameprot_C-linearis_contig80.15863.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length609
Homology
BLAST of mRNA_C-linearis_contig80.15863.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 581 bits (1498), Expect = 8.510e-201
Identity = 372/538 (69.14%), Postives = 400/538 (74.35%), Query Frame = 0
Query:   89 MLISNRKRRGIGQTRPQQPTEATTTATSAGKENVNDEGGHDGGARESERKIPD-GRHVYHTSDRGDERSNAVSSPSNGGGSSSLGWSPRHRKMKTTAVT-QASGERRLSLYDVLTGEAPLPPPRGETPDAAGAGAATIASSGGRFHASRS--SGGDGN--------GVVPLGGGARRASIFDRIADVVFNEEQKDQDPVDADAVRGELEDEFTVSFREGAMGMTLSMDPDTRDAVVGKIVEQGQAFRAGVQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELRFRKADALSGQGGSXXXXXXXXXXXXXXXXXXXX--AAAPEGSRSTSMSKPGRVS----MRGSLDRAREDSPSRKFKGI-GTKSGGGKAPISPISPRSSSRVSELGALGREVASSDSGFSQKMEHGVVVTKYGKKGAAAQRVLYLDSASMSVAWRDLDARSPGHRRSTSLTNIIKGKREGLALAHLIEVLAGDDPDPTRPTEMGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVTGFRDLQNKYG 607
            M++  RK R   QT P Q   AT       K   ND+ G DGG    ER+ P   R V    +   ++      P+     SSL WSPRHRKM ++ V  + SGERRLSLYDVLTGEAPLPP RG   D A A AA+      R    R   SGG           GVVPLGGGARRASIFDRIADVVFNEEQK QDPVDA AVR ELEDEF VSFREGAMGMTLSMDPDTRDA+VGKIVEQGQAFRAG+QTDDLVIGVGENTVSSYGTVLAFMNIMGRPIEL FRK+D  SG G  XXXXXX   X XXXXXXXXX  AA PEG R+T   K G VS    +RG+L+  R DS SRK KG  G KS GG AP SPISPRS  +VS    LGREVASSD+GFS+KMEHGVVVTKYGKKGAAAQR+LYLD  SMSVAWRDLDARSPGH RS+SLTNIIKGKRE LALAHL+EV+AGDDPDPTRP+E GSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLV GFRDLQ +YG
Sbjct:    1 MVVVRRKTRDSHQTPPHQSA-ATPPENDKAK---NDDEGQDGGRIPVERQRPAVDRSVNDKVEGASKQPREEPVPT-----SSLRWSPRHRKMNSSTVAAEGSGERRLSLYDVLTGEAPLPPTRGGLRDTASAEAASTT----RREVGRGLRSGGSXXXXXXXXXXGVVPLGGGARRASIFDRIADVVFNEEQKKQDPVDAIAVRSELEDEFRVSFREGAMGMTLSMDPDTRDAIVGKIVEQGQAFRAGIQTDDLVIGVGENTVSSYGTVLAFMNIMGRPIELHFRKSDKGSGDGXXXXXXXXISAXHXXXXXXXXXXSAAKPEGFRAT---KAGGVSKSGPIRGNLEGTRGDSLSRKLKGAAGVKSAGGIAPRSPISPRSQGKVSGFSGLGREVASSDAGFSEKMEHGVVVTKYGKKGAAAQRLLYLDGVSMSVAWRDLDARSPGHSRSSSLTNIIKGKREALALAHLLEVIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVAGFRDLQKQYG 522          
BLAST of mRNA_C-linearis_contig80.15863.1 vs. uniprot
Match: A0A835YTV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTV8_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.710e-9
Identity = 45/109 (41.28%), Postives = 62/109 (56.88%), Query Frame = 0
Query:  275 VDADAVRGELEDEFTVSFREGAMGMTLSMDP-DTRDAVVGKIVEQGQAFRAGVQTDDLVIGVGENTVSS-----------------YGTVLAFMNIMGRPIELRFRKAD 365
            VD  A+R  L  EF+V F EG++GM+L     DT  A V K+VE+GQA   GV+  D+V  VG++  +S                 YGT LAF+NI+GRP+ L F+K +
Sbjct: 1211 VDWSALRRALPKEFSVEFNEGSIGMSLVRTAADT--AEVSKVVERGQAHTGGVKAGDVVSAVGDSVATSMNXXXXXXXXXXXXXXXYGTTLAFLNILGRPVTLWFQKGE 1317          
BLAST of mRNA_C-linearis_contig80.15863.1 vs. uniprot
Match: A0A6U1C867_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1C867_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 7.460e-6
Identity = 42/144 (29.17%), Postives = 67/144 (46.53%), Query Frame = 0
Query:  471 FSQKMEHGVVVTKYGKKGAAAQRVLYLDSASMSVAWRDLDARSPGHRRS--TSLTNIIKGKREGLALAHLIEVLAGDDPDPTRPTEMGSAMLREHCDESLLERSF-------ALQFKERSLEMTCDSHAEMRQLVTGFRDLQNK 605
            F +K+E+GV V K+ ++G AA R+L L     S+ W          R     S+      K +   L  L EV  G+ PDP  P + G+  LR H  +    R         +L F +R++++  +S A+ + L  GF  L+N+
Sbjct:  169 FKEKLENGVQVVKFNRRGQAAFRLLVLKEDGRSLTWSVPRGTQADGRLGFGQSVRRKFSAKSDSFDLRSLSEVRLGEAPDPAFPGKFGTETLRMHASKYAQIRQMQEHGLCVSLIFPDRTVDLGSNSQAQRQFLTRGFGLLRNR 312          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15863.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS10_ECTSI8.510e-20169.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YTV8_9STRA4.710e-941.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U1C867_9STRA7.460e-629.17Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 92..608
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..91
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 294..358

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:306134..310912 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15863.1mRNA_C-linearis_contig80.15863.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 306134..310912 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15863.1 ID=prot_C-linearis_contig80.15863.1|Name=mRNA_C-linearis_contig80.15863.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=609bp
RKKTLPPENHAWQGSGFFARGVSASLGPMNWLWRMTTSTLSWSYAQIDGE
GGGGARSANAGFGTSSLANVEIGTLLPGVVVVCGTIAGMLISNRKRRGIG
QTRPQQPTEATTTATSAGKENVNDEGGHDGGARESERKIPDGRHVYHTSD
RGDERSNAVSSPSNGGGSSSLGWSPRHRKMKTTAVTQASGERRLSLYDVL
TGEAPLPPPRGETPDAAGAGAATIASSGGRFHASRSSGGDGNGVVPLGGG
ARRASIFDRIADVVFNEEQKDQDPVDADAVRGELEDEFTVSFREGAMGMT
LSMDPDTRDAVVGKIVEQGQAFRAGVQTDDLVIGVGENTVSSYGTVLAFM
NIMGRPIELRFRKADALSGQGGSGGGPISISKAKAADGGGGGRAAAPEGS
RSTSMSKPGRVSMRGSLDRAREDSPSRKFKGIGTKSGGGKAPISPISPRS
SSRVSELGALGREVASSDSGFSQKMEHGVVVTKYGKKGAAAQRVLYLDSA
SMSVAWRDLDARSPGHRRSTSLTNIIKGKREGLALAHLIEVLAGDDPDPT
RPTEMGSAMLREHCDESLLERSFALQFKERSLEMTCDSHAEMRQLVTGFR
DLQNKYGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036034PDZ_sf