prot_C-linearis_contig80.15862.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig80.15862.1
Unique Nameprot_C-linearis_contig80.15862.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length527
Homology
BLAST of mRNA_C-linearis_contig80.15862.1 vs. uniprot
Match: A0A6H5KCA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA4_9PHAE)

HSP 1 Score: 574 bits (1479), Expect = 9.050e-200
Identity = 326/536 (60.82%), Postives = 368/536 (68.66%), Query Frame = 0
Query:    1 MGRELTAVFTYSLLLLLCPRPDAFLPSPKLGSS-SAQHRGCRHRH---PSTFRMHPNLSRPHRRYSTVRQHANSTHGDRAGEPAPQRAPPPL-----DAPQSVA-FRVLRGGRRNTLGEDGDGGGSIIRPEDDVIEVSLDQGVTDGGXXXXXXLANTAESLRDFLFLARSSQPGSIGEELQRRDVRVFPEEAFVDDDEDEGESGKPHIAEGAKGTSSEDDLSRFSWVGGTPLPLDTAMADLPRDEKGRARLVVWDPCGTGHPLVRAVGGEPGEQASIDVLNFLLDGNEARGGGRQEEAGGDRPGSRASGGCTRGYGEDFDESRSAVVFKNWFTAQQQQVIADALAAQMFDEDDEEGPGLAVDREHFPLLRDRAALSAVGDGMLSALSSDRFSGQAGGRAPPVPTRTNREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGTCSGSPDLRLELASGEGLLFNGYELFHEVHGVKHGTAPAFWEKHALSVKGGFARVGFLSMKSFNSKGVSAPTWGPERKSSSTTTTGNAEA 526
            MGR+LTA+FT SL++LLCP PDAF+PS ++G   SA     RHR    P T R  P+L  P  R S  +Q  N                        + P SV  FRVLRGG             +   PE D++EVSLD+  + GG      +AN  + LR+FLFL RSSQPGSIGE+LQRR VRVFPEEAF D + + G                        W GG PLPLDT M +LPRD +GR RLV+WDPCG  HPLVRAV  EP + AS++VLNFLL G+  R  G +  AG         GGC+ GYG DFDESRSAVVF+ WFT +QQQVIAD+LA+Q+F EDD+EGPGL VDREHFPLLRDRA L+AVGD MLSALSSDRFSG+ GGR PPVPTR NREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLG   G PD+RLELASGEGLLFNGYELFHEVHGVK GTAPAFWE HALS KGGFARVGFLSMKSFNSKGVSAPTWG E+ SS+    GNA+A
Sbjct:    1 MGRDLTAIFTSSLVVLLCPGPDAFVPSARIGPPLSAAPPRPRHRVEGLPLTRRTRPSL--PCTRSSAQQQADNRXXXXXXXXXXXXXXXXXXXXXTANGPASVVRFRVLRGGNPRD-------NAAAATPEADLVEVSLDRPDSGGG------MANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAEVG------------------------WAGGRPLPLDTPMTELPRDGEGRVRLVLWDPCGPDHPLVRAVSVEPSKDASVEVLNFLLPGDRRRHDGGEGTAG-------DGGGCSSGYGRDFDESRSAVVFRKWFTVEQQQVIADSLASQIFAEDDDEGPGLDVDREHFPLLRDRAGLAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGMSKGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWETHALSAKGGFARVGFLSMKSFNSKGVSAPTWGVEKGSSA----GNAKA 486          
BLAST of mRNA_C-linearis_contig80.15862.1 vs. uniprot
Match: D7FS11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS11_ECTSI)

HSP 1 Score: 546 bits (1407), Expect = 8.060e-189
Identity = 308/507 (60.75%), Postives = 351/507 (69.23%), Query Frame = 0
Query:   21 PDAFLPS----PKLGSSSAQHR--GCRHRHPSTFRMHPNLSRPHRRYSTVRQHANSTHGDRAGEPAPQRAPPPL-------DAPQSVA-FRVLRGGRRNTLGEDGDGGGSIIRPEDDVIEVSLDQGVTDGGXXXXXXLANTAESLRDFLFLARSSQPGSIGEELQRRDVRVFPEEAFVDDDEDEGESGKPHIAEGAKGTSSEDDLSRFSWVGGTPLPLDTAMADLPRDEKGRARLVVWDPCGTGHPLVRAVGGEPGEQASIDVLNFLLDGNEARGGGRQEEAGGDRPGSRASGGCTRGYGEDFDESRSAVVFKNWFTAQQQQVIADALAAQMFDEDDEEGPGLAVDREHFPLLRDRAALSAVGDGMLSALSSDRFSGQAGGRAPPVPTRTNREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGTCSGSPDLRLELASGEGLLFNGYELFHEVHGVKHGTAPAFWEKHALSVKGGFARVGFLSMKSFNSKGVSAPTWGPER 513
            PDAF+PS    P L ++  +HR  G     P T R   +L   H   S+ +Q A++ HG                      + P SV  FRVLRGG      ++         PE D++EVSLD+  + GG      +AN  + LR+FLFL RSSQPGSIGE+LQRR VRVFPEEAF D + + G +G             E+ LS   W GG PLPLDT M +LPRD +GR RLV+WDPCG  HPLVRAV  EP + AS+ VLNFLL  +  R  G +  AG         GGC+ GYG DF+ESRSAVVF+ WFT +QQQVIAD+LA+QMF EDD+EGPGL VDREHFPLLRDRAAL+AVGD MLSALSSDRFSG+ GGR PPVPTR NREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLG   G PD+RLELASGEGLLFNGYELFHEVHGVK GTAPAFWE HAL+ KGGFARVGFLSMKSFNSKGVSAPTWG E+
Sbjct:    4 PDAFVPSARIRPPLSTAPPRHRVEGL----PLTRRTPWSLPCTH---SSAQQQADNGHGXXXXXXXXXXXXXXXXXXXXXXNGPASVVRFRVLRGGNPR---DNAAAXXXAATPEADLVEVSLDRPDSGGG------MANNPQDLREFLFLVRSSQPGSIGEDLQRRGVRVFPEEAFADAEAELG-AGXXXXXXXXXXXXGEEGLSGVGWTGGRPLPLDTPMTELPRDGEGRVRLVLWDPCGPTHPLVRAVSVEPSKDASVMVLNFLLPEDSRRHDGGEGTAG-------EGGGCSSGYGSDFNESRSAVVFRKWFTVEQQQVIADSLASQMFAEDDDEGPGLDVDREHFPLLRDRAALAAVGDSMLSALSSDRFSGEVGGRDPPVPTRANREFNAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGVSQGRPDIRLELASGEGLLFNGYELFHEVHGVKPGTAPAFWENHALNAKGGFARVGFLSMKSFNSKGVSAPTWGVEK 486          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15862.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA4_9PHAE9.050e-20060.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS11_ECTSI8.060e-18960.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..526
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..23
score: 0.593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:300664..305767 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15862.1mRNA_C-linearis_contig80.15862.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig80 300002..305823 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig80.15862.1 ID=prot_C-linearis_contig80.15862.1|Name=mRNA_C-linearis_contig80.15862.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=527bp
MGRELTAVFTYSLLLLLCPRPDAFLPSPKLGSSSAQHRGCRHRHPSTFRM
HPNLSRPHRRYSTVRQHANSTHGDRAGEPAPQRAPPPLDAPQSVAFRVLR
GGRRNTLGEDGDGGGSIIRPEDDVIEVSLDQGVTDGGGGGGGGLANTAES
LRDFLFLARSSQPGSIGEELQRRDVRVFPEEAFVDDDEDEGESGKPHIAE
GAKGTSSEDDLSRFSWVGGTPLPLDTAMADLPRDEKGRARLVVWDPCGTG
HPLVRAVGGEPGEQASIDVLNFLLDGNEARGGGRQEEAGGDRPGSRASGG
CTRGYGEDFDESRSAVVFKNWFTAQQQQVIADALAAQMFDEDDEEGPGLA
VDREHFPLLRDRAALSAVGDGMLSALSSDRFSGQAGGRAPPVPTRTNREF
NAVCYGAQAKMQEHRDTWKEWTLIVSIGNTIPFDLGTCSGSPDLRLELAS
GEGLLFNGYELFHEVHGVKHGTAPAFWEKHALSVKGGFARVGFLSMKSFN
SKGVSAPTWGPERKSSSTTTTGNAEA*
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