prot_C-linearis_contig80.15858.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_C-linearis_contig80.15858.1
Unique Name	prot_C-linearis_contig80.15858.1
Type	polypeptide
Organism	Chordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length	511

Homology

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BLAST of mRNA_C-linearis_contig80.15858.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 529 bits (1362), Expect = 1.670e-171
Identity = 279/429 (65.03%), Postives = 306/429 (71.33%), Query Frame = 0

Query:   56 EPFTLAPGSGLKWVQAADTREGHAAACLRNGLDPTPSEVLLSDQVLPALESAAPTDXXXXXXXXXXXXXXXXXXXXXX---QPLWSEAILSLVASGLGLELERPGGVAGCCVPGMWCGPRGCYTLAFGGTFSNHGGYVGIPADEYSIFTCVEPSVPLAAPPANSSAAPTAASDSDGSPAAEGPVDNNNSXXXXXTAISAEXXXXXXXXXXXXXXXXASALPTLPPAEQPTATVGHVENGSPPAAPARPTIDSVSPGVARAGEALMVVGTGFGEAVEDVRVMVGGRDCRDPELCHLVCRPCSDEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCMPKRFELQGEPHSMVVNLCRPPDADPNFLCHGSALREQERIQCTVPVLVWDQAETESSDNAGQGLGAPPAPARSRGTDG---YGGDEIE 478
            EPFTL  GS L WV+AADTREGHAAACLRNGLDPTP ++ L DQ LPAL++A   +                         +PLWSE ++++VA+GLGLELERPGG+AGCCVPGMWCGPRGCYTLAFG TFSN+GGYVG+P D+YSI+TC EPSVPLAAP  +S+ AP A + SD   AA  P                                  +ALPTL P   P A V        PA P RPTI SV P V +AGEALMVVG+GFGEAV DVRVMVGGRDCRDPELCHLVCRPC +EDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRC+PKRFELQGEPHSMVVNLCRPPDADPNFLCHGS LREQERIQCTVPVLVWDQAETESSD AG GLG  P   R R  DG    GG+ +E
Sbjct:   35 EPFTLTEGSALYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQTLPALQAAEQAEEAPEGAASSTPRNASSSDAATPPPARPLWSENLVTVVANGLGLELERPGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPPDDYSIYTCKEPSVPLAAPADSSTPAP-AVNGSDPGDAASAPGSTT------------------------------AALPTLSPTA-PAAEVEEKAGDGSPAPPVRPTIVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDADPNFLCHGSVLREQERIQCTVPVLVWDQAETESSDRAGAGLGQKPPVRRGRHLDGDGRRGGERVE 431

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BLAST of mRNA_C-linearis_contig80.15858.1 vs. uniprot
Match: A0A6H5L2U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U7_9PHAE)

HSP 1 Score: 447 bits (1149), Expect = 4.200e-151
Identity = 245/407 (60.20%), Postives = 275/407 (67.57%), Query Frame = 0

Query:   56 EPFTLAPGSGLKWVQAADTREGHAAACLRNGLDPTPSEVLLSDQVLPALESAAPTDXXXXXXXXXXXXXXXXXXXXXX---QPLWSEAILSLVASGLGLELERPGGVAGCCVPGMWCGPRGCYTLAFGGTFSNHGGYVGIPADEYSIFTCVEPSVPLAAPPANSSAAPTAASDSDGSPAAEGPVDNNNSXXXXXTAISAEXXXXXXXXXXXXXXXXASALPTLPPAEQPTATVGHVENGSPPAAPARPTIDSVSPGVARAGEALMVVGTGFGEAVEDVRVMVGGRDCRDPELCHLVCRPCSDEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCMPKRFELQGEPHSMVVNLCRPPDADPNFLCHGSALREQERIQCTVPVLVWDQAETESSDNAGQGLGA 459
            EP TL  GSGL WV+AADTREGHAAACLRNGLDPTP ++ L DQ LPAL++A P +                         QPLWSE +L+++A+GLGLELER GG+AGCCVPGMWCGPRGCYTLAFG TFSN+GGYVG+PAD+YSI+TC EPSVPLAAP  +S+ AP A + SD S AA        S     TA                      ALPTL P   P A VG       PA P RPT+ SV P V +AGEALMVVG+GFGEAV DVRVMVGGRDCRDPELCHLVCRPC +EDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRC+PKRFELQGEPHSMVVNLCRPPDA               + Q TVP     +A   +   +G G+G+
Sbjct:   47 EPLTLTEGSGLYWVKAADTREGHAAACLRNGLDPTPPDIFLPDQALPALQAAVPVEGAPDGAASSTPRNASSSDATTPPPAQPLWSENLLTVIANGLGLELERSGGLAGCCVPGMWCGPRGCYTLAFGDTFSNYGGYVGVPADDYSIYTCKEPSVPLAAPVDSSTPAP-AVNGSDPSHAA--------SAHGSTTA----------------------ALPTLSPTA-PAAEVGEEAGDGSPAPPVRPTVVSVGPEVVKAGEALMVVGSGFGEAVSDVRVMVGGRDCRDPELCHLVCRPCGEEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCLPKRFELQGEPHSMVVNLCRPPDAG--------------KSQFTVPRERASRARANTVHRSGVGVGS 407

The following BLAST results are available for this feature:

BLAST of mRNA_C-linearis_contig80.15858.1 vs. uniprot

BLAST of mRNA_C-linearis_contig80.15858.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FI05_ECTSI	1.670e-171	65.03	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L2U7_9PHAE	4.200e-151	60.20	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 287..347 e-value: 2.0E-5 score: 26.3
IPR002909	IPT domain	PFAM	PF01833	TIG	coord: 300..339 e-value: 1.7E-4 score: 21.6
None	No IPR available	PANTHER	PTHR45725	FAMILY NOT NAMED	coord: 33..327
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 46..511
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..45
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 22..33
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 34..45
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..38 score: 0.584
None	No IPR available	TMHMM	TMhelix		coord: 21..43

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-linearis_contig80	contig	C-linearis_contig80:273467..277618 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig80.15858.1	mRNA_C-linearis_contig80.15858.1	Chordaria linearis ClinC8C monoicous	mRNA	C-linearis_contig80 273467..277618 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_C-linearis_contig80.15858.1 ID=prot_C-linearis_contig80.15858.1|Name=mRNA_C-linearis_contig80.15858.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=511bp
MPPAPCCCTLATSRHAMKRRPAVCCIFLALGLAAAAAAATAEAEAATAEP
AAAGVEPFTLAPGSGLKWVQAADTREGHAAACLRNGLDPTPSEVLLSDQV
LPALESAAPTDDDAAATTPLNSSTAAAAPPPPPQPLWSEAILSLVASGLG
LELERPGGVAGCCVPGMWCGPRGCYTLAFGGTFSNHGGYVGIPADEYSIF
TCVEPSVPLAAPPANSSAAPTAASDSDGSPAAEGPVDNNNSNNNNATAIS
AESDNSGSSSRSSGSDGSASALPTLPPAEQPTATVGHVENGSPPAAPARP
TIDSVSPGVARAGEALMVVGTGFGEAVEDVRVMVGGRDCRDPELCHLVCR
PCSDEDRCEFDEMCMEDGLSKEKVCLPICDGTEGSCPCDHRCMPKRFELQ
GEPHSMVVNLCRPPDADPNFLCHGSALREQERIQCTVPVLVWDQAETESS
DNAGQGLGAPPAPARSRGTDGYGGDEIERDHAAGAGRRRLLDDGGGEEGV
LPAAAGVSLSV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR002909	IPT_dom