prot_C-linearis_contig8.15716.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15716.1
Unique Nameprot_C-linearis_contig8.15716.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length236
Homology
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: D8LLX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLX7_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 6.710e-128
Identity = 186/222 (83.78%), Postives = 203/222 (91.44%), Query Frame = 0
Query:   15 RRRFGCSIIGVIPGLACRRWLSDSTPADAPKP-TAAGAGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGAKRERGEEGYVEDPVDWEEDFGQEAAKAAGRGLPDGDR 235
            RRR   S +G +PGLACRRWLSDS+ +D P+P ++A A TDGRTWTWSTPSP+RPGRGGAEI VIPR+NLTVDEVV A+EAQG TDVRAIDLRGKGAGMGDFMVF TA TPL MRRLANMVVQALK+RKL NAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALG+KR++GEEG+VEDPVDWEEDFGQEAAKAAGRG+ D +R
Sbjct:   25 RRRLP-STVGAVPGLACRRWLSDSS-SDTPRPPSSAAAATDGRTWTWSTPSPNRPGRGGAEIAVIPRVNLTVDEVVKAVEAQGGTDVRAIDLRGKGAGMGDFMVFCTAATPLQMRRLANMVVQALKQRKLVNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGSKRKKGEEGHVEDPVDWEEDFGQEAAKAAGRGIIDENR 244          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A836CM28_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM28_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.020e-41
Identity = 80/164 (48.78%), Postives = 112/164 (68.29%), Query Frame = 0
Query:   30 ACRRWLSDSTPADAPKPTAAG---AGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 190
            A +   + S+ A +P  TAAG   +    R+WTWS+ +P + G G A+I V P++ LTV EVV+A+E  G TD+R + L GK + + D M+F T  +  HM+RL++++  ALKRRKL++A GITGAEG DCDDWM+VDC NLIVH   A+ R+EL+LE  WE +
Sbjct:   49 AAKNPTATSSGAKSPAGTAAGPDRSAVKARSWTWSSNAPRKAG-GSADIDVKPKVPLTVGEVVTALENNGGTDIRVVHLAGK-SDLADAMIFCTGRSMRHMQRLSDVITYALKRRKLSHAPGITGAEGYDCDDWMIVDCWNLIVHVFEAKYRKELNLEARWENI 210          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A7S2R5J7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.790e-31
Identity = 72/183 (39.34%), Postives = 102/183 (55.74%), Query Frame = 0
Query:   31 CRRWLSDSTPADAPKPTAAGAGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGAKRERGEEGYVEDPVD 213
            C R L+ + P   P         +G +W W  P+       G +IPV+PR  LTV+EV +A+E      V  +D+ GK       MVF T     HMRR+A+++V ALK+RK+  A G +GAEG DCDDWM+VD  N+IVH M  +AR+ LDLE HW+   +    G   E   E ++E+ ++
Sbjct:   52 CARVLAATPPPSDP--------LEGLSWNWEPPAVVEQQAAGYQIPVVPRKYLTVEEVTTALEELRGMQVAVVDVTGKLEETSS-MVFCTGLGRTHMRRMADVLVSALKKRKI-KAPGASGAEGYDCDDWMIVDAGNIIVHLMNEKARRLLDLEAHWKNPEATLPQGGT-ESQREAHIEELIE 223          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A2D4BP62_PYTIN (Iojap-like ribosome-associated protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BP62_PYTIN)

HSP 1 Score: 120 bits (302), Expect = 1.850e-29
Identity = 64/145 (44.14%), Postives = 93/145 (64.14%), Query Frame = 0
Query:   48 AAGAGTDGRTWTWSTPS----PDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE 188
            AA A + G +     PS    PD   R    IP IP+  LT+DEV++A+E + A DV  +DL GK + + DFMVF+T  +  HMRR+A+M++Q++K R + +    +  EG DCDDWM+ DC+N++VHFM  + R+ L+LE HWE
Sbjct:   86 AAAAASGGLSAAGDVPSEWEVPDAGKRNADIIPPIPQTYLTLDEVLAALEREKAIDVYTVDLAGKSS-LADFMVFTTGRSQAHMRRMADMLIQSMKARNIEDEFDYS-VEGRDCDDWMIADCNNIVVHFMREDTRRILNLEHHWE 228          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A3F2RH48_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RH48_9STRA)

HSP 1 Score: 115 bits (287), Expect = 8.400e-28
Identity = 52/118 (44.07%), Postives = 82/118 (69.49%), Query Frame = 0
Query:   75 IPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVAS 192
            IP +P+  LT+DEV  A+E + A DV  +DL GK + + D+MVF+T  +  HMRR+A+++++++K R++ +     G EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE + +
Sbjct:   69 IPAVPQTYLTIDEVQEALEREKAIDVYTVDLAGKSS-LADYMVFATGKSQAHMRRMADLLIKSMKAREIVDEFDY-GVEGRDCDDWMIADCNNIVVHLMHADTRRILALEDHWENMVN 184          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: H3GI95_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GI95_PHYRM)

HSP 1 Score: 115 bits (289), Expect = 2.360e-27
Identity = 56/125 (44.80%), Postives = 85/125 (68.00%), Query Frame = 0
Query:   64 SPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE 188
            +PD   R    IP IP+  LT+DEV+ A+E + A DV  +DL GK + + DFMVF+T  +  HMRR+A+++++++K R++ +    +  EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE
Sbjct:  137 APDAGNRHADIIPSIPQTYLTIDEVMEALEKEKAIDVYTVDLAGKSS-LADFMVFATGRSQAHMRRMADLLIKSMKVRQIVDDFDYS-VEGRDCDDWMIADCNNIVVHLMRADTRRILALEEHWE 259          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A5D6Y9S2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9S2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 3.530e-27
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = 0
Query:   36 SDSTPADAPKPTAAGAGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWE 188
            ++   A    PTA  A   G    W+ P   +  R    IP IP+  LT+DEV++A+E + A DV  +DL GK + + D+M+F+T  +  HMRR+A+M++ +++ RKL +       EG DCDDWM+ DC+N++VHFM A+ R+ L LE HWE
Sbjct:  196 AEDAAASNADPTAL-ATAAGEVGEWAVPEVGK--RHADIIPPIPQTYLTLDEVLAALENEKAIDVYTVDLAGKSS-LADYMIFTTGRSQAHMRRMADMMIGSMRARKLVDEFEYA-VEGRDCDDWMIADCNNIVVHFMNADTRRILALEEHWE 343          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A7S1U8V2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8V2_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.420e-27
Identity = 65/134 (48.51%), Postives = 83/134 (61.94%), Query Frame = 0
Query:   54 DGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHW 187
            +G T+ W   +         EIPV+    L+V EVV+A++A GA D+RA+      AGM D MVF+T     H RRLAN+VV+AL+ RK+  A+G  G EG   DDWMLVD  N+I+H MTAEAR  L LE HW
Sbjct:    2 EGPTFEWGGSAAPAAVAATTEIPVVRGKALSVFEVVTALQANGAIDIRAVK-PDPAAGMCDTMVFATGLAAAHRRRLANVVVRALRARKI-KAIGRKGFEGAKDDDWMLVDAGNIILHVMTAEARAHLALERHW 133          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A8K1CVN1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVN1_PYTOL)

HSP 1 Score: 115 bits (289), Expect = 6.510e-27
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 0
Query:   36 SDSTPAD--APKPTAAGAGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 190
            SDS  A   A  P++A A  DG T  W  P   +  R    IP +    LT+DEV+ A+E + A DV  ++L GK + + D+M+F+T  +  HMRR+A+M++Q++K R L++       EG DCDDWM+ DC+N++VHFM  + R+ L+LE HWE +
Sbjct:  168 SDSAEAALAASAPSSAFA-MDGATSEWEVPDVGK--RNAEIIPPVAGQYLTIDEVLEALEREKAIDVYTVNLTGKSS-LADYMIFTTGRSQAHMRRMADMMIQSMKARNLSDDFDYA-VEGRDCDDWMIADCNNVVVHFMREDTRRILNLEDHWENM 319          
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Match: A0A329SL63_9STRA (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=A0A329SL63_9STRA)

HSP 1 Score: 114 bits (286), Expect = 7.090e-27
Identity = 55/127 (43.31%), Postives = 84/127 (66.14%), Query Frame = 0
Query:   64 SPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDVRAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETV 190
            +P+   R    IP IP+  LT+DEV  A+E + A DV  +DL GK + + DFMVF+T  +  HMRR+A+++++++K R++ +       EG DCDDWM+ DC+N++VH M A+ R+ L LE HWE +
Sbjct:  143 APEAGNRHADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSS-LADFMVFATGRSQAHMRRMADLLIKSMKAREIVDDFDYA-VEGRDCDDWMIADCNNIVVHLMRADTRRILALEDHWENM 267          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15716.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLX7_ECTSI6.710e-12883.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CM28_9STRA5.020e-4148.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2R5J7_9STRA4.790e-3139.34Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4BP62_PYTIN1.850e-2944.14Iojap-like ribosome-associated protein n=1 Tax=Pyt... [more]
A0A3F2RH48_9STRA8.400e-2844.07Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GI95_PHYRM2.360e-2744.80Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A5D6Y9S2_9STRA3.530e-2741.18Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S1U8V2_9STRA6.420e-2748.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8K1CVN1_PYTOL6.510e-2741.40Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A329SL63_9STRA7.090e-2743.31Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.460.10coord: 81..196
e-value: 1.2E-22
score: 81.8
NoneNo IPR availablePFAMPF02410RsfScoord: 87..187
e-value: 6.7E-22
score: 77.8
NoneNo IPR availablePANTHERPTHR21043:SF0MITOCHONDRIAL ASSEMBLY OF RIBOSOMAL LARGE SUBUNIT PROTEIN 1coord: 78..190
NoneNo IPR availableSUPERFAMILY81301Nucleotidyltransferasecoord: 85..188
IPR004394Protein Iojap/ribosomal silencing factor RsfSTIGRFAMTIGR00090TIGR00090coord: 85..187
e-value: 2.3E-17
score: 61.0
IPR004394Protein Iojap/ribosomal silencing factor RsfSPANTHERPTHR21043IOJAP SUPERFAMILY ORTHOLOGcoord: 78..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2859148..2861089 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15716.1mRNA_C-linearis_contig8.15716.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2857886..2861157 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15716.1 ID=prot_C-linearis_contig8.15716.1|Name=mRNA_C-linearis_contig8.15716.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=236bp
MLRPLASTAAHLAGRRRFGCSIIGVIPGLACRRWLSDSTPADAPKPTAAG
AGTDGRTWTWSTPSPDRPGRGGAEIPVIPRINLTVDEVVSAIEAQGATDV
RAIDLRGKGAGMGDFMVFSTATTPLHMRRLANMVVQALKRRKLANAMGIT
GAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHWETVASGTALGAKR
ERGEEGYVEDPVDWEEDFGQEAAKAAGRGLPDGDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30