prot_C-linearis_contig8.15668.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15668.1
Unique Nameprot_C-linearis_contig8.15668.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length75
Homology
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 3.210e-24
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    2 NYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVRG 75
            NY+F  +F VEA++KILA R AYF D WNRFD+F+V+G+  GL  +W+ G SYGSIATIIR FR+GRVLRLVRG
Sbjct: 1323 NYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVIGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRG 1396          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.960e-24
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 0
Query:    2 NYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVRG 75
            NY+F  +F VEA++KILA R AYF D WNRFD+F+V+G+  GL  +W+ G SYGSIATIIR FR+GRVLRLVRG
Sbjct:  825 NYSFSFIFTVEAIIKILAFRRAYFIDPWNRFDIFIVMGTNLGLAMLWMTGRSYGSIATIIRTFRIGRVLRLVRG 898          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A7S4DBN8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBN8_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 9.880e-18
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLV 73
            +NY F ++F VEA++K+ ALR AYFK+ WN FD  +V+ +  GLL  W+ GSS GSIA+IIR FR+GRV RLV
Sbjct:  712 INYFFALVFTVEAVIKLFALRKAYFKEGWNCFDFSIVLATNLGLLFYWVFGSSIGSIASIIRTFRIGRVTRLV 784          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A812VYI9_SYMMI (Scn4ab protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VYI9_SYMMI)

HSP 1 Score: 80.9 bits (198), Expect = 4.080e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVRG 75
            +N  F ++F +EA++KI AL+  YF D WNRFD  VVVG+ AGL+ +W+ GS+ G   TI+R FR+ R+LRL+ G
Sbjct:   32 MNTMFAMIFTLEAVIKISALKSKYFSDMWNRFDFVVVVGTNAGLIFLWISGSNIGMTVTILRTFRIARLLRLMNG 106          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 6.130e-14
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIAT 59
            L Y  + LF +EAL KILALR AYFKD WNRFD F+V+GS AGLL++  + S+YG++ T
Sbjct: 1068 LLYVLYALFTLEALAKILALRWAYFKDPWNRFDFFIVLGSTAGLLSLLFLDSNYGTVIT 1126          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A067C9X3_SAPPC (EF-hand domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C9X3_SAPPC)

HSP 1 Score: 72.8 bits (177), Expect = 2.900e-13
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVR 74
            LNY F  +F +EA++KI+A   AYF D WNRFD  +VV +A  L+         G+ +T++R+FR+GR LRL++
Sbjct:  677 LNYIFSAIFGLEAVLKIIAFGAAYFTDGWNRFDFTIVVFTAVSLILPLFTSVDLGTASTVVRVFRVGRALRLIK 750          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: T0S1P8_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S1P8_SAPDV)

HSP 1 Score: 72.0 bits (175), Expect = 5.460e-13
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVR 74
            LNY F  +F +EA++KILA   AYF + WNRFD  +VV +A  L+         G+ +T++R+FR+GR LRL++
Sbjct: 1247 LNYIFSAIFGLEAILKILAFGKAYFTEGWNRFDFAIVVFTAVSLILPLFTSVDLGTASTVVRVFRVGRALRLIK 1320          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A1V9Z9F7_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9F7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.600e-12
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 0
Query:    2 NYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLVR 74
            NY F  +FAVEA +KI A   AYF + WNRFD  +V+ +A  LL         G+ +T++R+FR+GR LRL++
Sbjct: 1241 NYIFSAVFAVEAALKITAFGGAYFMEGWNRFDFIIVIFTALSLLLPLFTNVDLGATSTVVRVFRVGRALRLIK 1313          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A5A8C3H7_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C3H7_CAFRO)

HSP 1 Score: 69.7 bits (169), Expect = 3.550e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYF---KDS-WNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLV 73
            +NY F  +F +EA++KI AL   YF   +DS WN FD  +VVGS  G++  + +G S GS+AT++R FR+GR+ RLV
Sbjct: 1345 INYVFAAIFTLEAVLKISALGCKYFHGAEDSAWNIFDFAIVVGSNLGIVLQFALGLSVGSVATVVRTFRIGRIFRLV 1421          
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Match: A0A5A8D9W3_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D9W3_CAFRO)

HSP 1 Score: 69.7 bits (169), Expect = 3.570e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 0
Query:    1 LNYTFFVLFAVEALMKILALRLAYF---KDS-WNRFDLFVVVGSAAGLLAVWLVGSSYGSIATIIRIFRLGRVLRLV 73
            +NY F  +F +EA++KI AL   YF   +DS WN FD  +VVGS  G++  + +G S GS+AT++R FR+GR+ RLV
Sbjct: 2122 INYVFAAIFTLEAVLKISALGCKYFHGAEDSAWNIFDFAIVVGSNLGIVLQFALGLSVGSVATVVRTFRIGRIFRLV 2198          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15668.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE6_ECTSI3.210e-2466.22Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE5.960e-2466.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DBN8_HETAK9.880e-1857.53Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A812VYI9_SYMMI4.080e-1650.67Scn4ab protein n=1 Tax=Symbiodinium microadriaticu... [more]
D8LI93_ECTSI6.130e-1459.32Similar to sodium channel, voltage-gated, type IX,... [more]
A0A067C9X3_SAPPC2.900e-1344.59EF-hand domain-containing protein n=1 Tax=Saproleg... [more]
T0S1P8_SAPDV5.460e-1344.59Uncharacterized protein n=3 Tax=Saprolegnia diclin... [more]
A0A1V9Z9F7_9STRA2.600e-1245.21Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A5A8C3H7_CAFRO3.550e-1248.05Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A5A8D9W3_CAFRO3.570e-1248.05Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027359Voltage-dependent channel domain superfamilyGENE3D1.20.120.350coord: 1..75
e-value: 1.0E-19
score: 72.7
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 1..74
e-value: 1.4E-13
score: 50.7
NoneNo IPR availablePANTHERPTHR10037VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUMcoord: 1..74
NoneNo IPR availablePANTHERPTHR10037:SF62SODIUM CHANNEL PROTEIN 60Ecoord: 1..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..64
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 5..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 65..75
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 1..74
NoneNo IPR availableTMHMMTMhelixcoord: 5..24
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2435590..2436180 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15668.1mRNA_C-linearis_contig8.15668.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2435590..2436180 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15668.1 ID=prot_C-linearis_contig8.15668.1|Name=mRNA_C-linearis_contig8.15668.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
LNYTFFVLFAVEALMKILALRLAYFKDSWNRFDLFVVVGSAAGLLAVWLV
GSSYGSIATIIRIFRLGRVLRLVRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027359Volt_channel_dom_sf
IPR005821Ion_trans_dom