prot_C-linearis_contig8.15641.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15641.1
Unique Nameprot_C-linearis_contig8.15641.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length1932
Homology
BLAST of mRNA_C-linearis_contig8.15641.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 1274 bits (3298), Expect = 0.000e+0
Identity = 968/1729 (55.99%), Postives = 1089/1729 (62.98%), Query Frame = 0
Query:  294 EPNPSLVLAMAMGCGVIPGGDDLLTRDADTIAEYIGLMSYEAVAEEA-GTAVTAERWRQTG----------LSLKGSLDRAEATAACPARMPNLLALAETIHPLNGIVFSGAAATAAERASVAAGLPPXXXXXXXXXKRKGGIGISPWVNDSALIFPPLKTAVESRRTESPIFSLLKTAAVATATADGQARETEAPGLKRRRMDVSAFLCPFELNGVCNDDDCRYQHLDIYLRKPSEKPSTPLPPDDAATATPNTNSPSATVSDPRVPGKEPARSPATGVPAAAGAVPEDTVLQSKQQQLPPIDFSGE---------REPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSKEXXESGEETTSVYGEEDFLALPTESAECQRGESGGGASGXXRASEAAAAERPSPAVLANAFARAASGDSTKGGHGXXXXXXXXXXXXXSSGGLEARYYFEDGSGRAQGAAVTALTEDQLNALEAQLKNEDARCDVEGWLLLALHRLPRSGDSVTAVLNAVGGVASGASGPMGSLDQAAIKPALRTFVQPLERAEGEQAEALWLLYLRLFAFLPGKGDDALGMAEYALEKFPTSRRIWRLYHSMLQKSSVWSLTKETSCYTRQFEALLLLR--------SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPGAEXXXXXXXXDTNVEMVIYLMLERCCLLTESGYKLQAAAEMLDALGPLTEGQPLWGWDAADEQGRRTMLRTPSG----RDNDGXXXXXXXXXXXXXXXXX------QRLPPGVAMVVKEAPRESRCVLWLTALHILMTGVFPRHALLLAEXXXXXXXXXXXGAETNPREDTRDLAHLLLWPKEWLSSKGSPGLEPPVNAELQEVIFKTFMSALSDAELLPPKSRGGQGWAPPTKDRDALLSSALEAKTARTRGLAPDPSALEGTPLVLALNWLTFC--RGRADAKQGRMMAVACCRRFQLARPDHPALLEHFLLEHQISKARTLDGIYDEISRAFDPEGVAAEAVRERREAAEGKRNQNPT-ATDSGQSEPSVLPLPSEDRLQAVYTFLRFVEMRLEAA--ESNPAAPAGRDTVEVAQRVLHRALVGMWAAAPTSTSN---------ARSPGPREWLQKGADEPVRQALEGAKASLFRWADGASGSEAELSAGTSSRRPGVRRRRDVPGRNGERQLSTIVFSLWLLGGASAATGALDHLLSAGSFSSMSAERRRLAWLQRLGAAVVMSARQA---QAPGEDSLQAVREVALRALADHRTHRR----VEYPTLAHFVASTLDRPVVGSSSTRDFGNQSG----RYHP-ASVAAETPVSSFSF--DVLTVYANHFR----GGVDWVVAAEALERGGGGGEDGRSAALALLRWVSWA-----------DDDEHVAAAAATG--GSLGIQINARPYVAKALTRHPGDPALSGAVAALHAATRWPGHAQRVLEAALRANPYCAALWEQRIALEAGFGYGSTERAGVTAAAAASSNALVRLNCGGKLGGETPSPLQARTAGRIATMICHPSCRRETKSFSLQAAL------AGPAQEAAAPATV-VPRSVFLMDSLVSLSLAFNGLVSVPVAIGRLXXXXXXXXXXXXXXXXXXXXXXLSGTLRVLRAAGNKLKSPLSANPLEDLVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-FSGRTPTGLSDVLPHLEELTLPALS 1931
            EP+ +L+LAMA+G G++PGGDDLLTRDA TIAEYI LMS+E + EE+ G     ERW Q G          LSL  +LD+AEATAA PAR+PNLLALA  I P++               S       XXXXXXXXX                               + P                      EAPG KRRR+D +A +CPFELNGVCNDDDCRYQHLD+YL  P   P T   P  A+ A  N     ++ S P       + SP  G  AAA A  ++      Q +LP IDF+G          RE                                  XXXXXXXXXXXX       + +  E             FLALPTE AE   G+ G  +SG      AAA E+ SPA LA AFA AASG    GG G             S  G E RYY E G G+ QGAA  AL +DQL+ALEA+L NE A CDVEGWLLLA+H+LPR+G S  AVLN +  VA GASGPMGS+DQAA+K ALRTFV+PLERA+G QAE LWLLYLRLFAFLPGK DDALGMAEYALEKFPTSRRIWRLYHSMLQ S  WSL ++ SCY RQ EALLLL+        S     XXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXX +  V+M++YL+LERC LL E+GYKLQAAAE+LD+LG L EGQPLWGWDA D QGRRT+LRT  G    R+ +G     XX                QRLP GVA  +K APR+SRCVLWLTALH+L+ GVFPRHAL LAE           G   +      DLA LLLWP EWLS K S  L    + +LQ+   KTFM+ALSD  LLPP    G  WAP  KDRDALLSSA EAK AR  G+APD SALEG PLVLALNWL FC  RGR DA+QGRMMA ACCRRFQL+RPD PALLEHFLLEH +SK RTL   Y EISRAFD +GVAA A+RERR+      + NP  A    +   +++P PS +R+QAVY FLRFVE RLEAA  ES  A  A R  +E A+RVL  ALVGMW    +             ARS   R WL++   E VRQALEGAKASLFRWADG SG                    D PG NGERQLSTIVFSLW+LGGASAA G+LDH+LSA SFS +SAER+RLAWLQRL AA+++S +Q    QA G D++Q VREVALRALADHRT RR     EYP+LAHFVA+TLDRP    S  RD G Q G    R  P AS+A ++  SS SF  DVLTVYANHFR    GGVDWVVAAEAL         G SAA                     D DE  AA AA+   G+  ++ NARPYV  AL  +P D AL GAVAAL AAT  P  AQRVLEAALRA+PYCA LWEQR+ALEAGFG GSTERAG TAAAAA S  ++RL CGGKLGG+TPS LQARTAGRIAT I HP+ RRE KSFSLQAAL      + P   A A AT+ VPRS+FLM SL SLSLAFNGL+S        XXXXXXXXXXXXXXXXXXXXX LSGTLR+LRAAGN+L+SPLSA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FS R P GLSD LP LEELTLPAL+
Sbjct:   57 EPDSNLLLAMAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEMLGEESQGRDRPVERWHQVGASIRRRLVPGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDS--------------SAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEP--------------------RAEAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYL--PPLNPGTSSAPISASAAA-NVQPAKSSASGPG------STSPVPGPLAAAAARTDERASALGQHRLPAIDFTGAAKRDAVARARENGRRGVVKPSSSRQPTSETGGVTPTAAEGGTADQXXXXXXXXXXXXGELEEADAVDSGEXXXXXXXXXXXXXFLALPTERAENNGGDGGEASSGT-----AAAPEQASPAALAKAFALAASGALASGGRGNVVRGAGG-----SGVGREERYYLEGGDGKTQGAASAALPDDQLSALEAKL-NEGASCDVEGWLLLAMHQLPRAGGSAKAVLNTISDVACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDARDGQGRRTLLRTFEGGGHEREGEGNGATRXXGGANAGGSTEASDDNGQRLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGL-----GGSNDTTAAGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGC-WAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVNLVPPPSGERIQAVYAFLRFVESRLEAARSESESANDADRGALEDARRVLRDALVGMWTGVSSXXXXXXXXXXXXXARSESYR-WLEEEGGESVRQALEGAKASLFRWADGGSGGC------------------DAPGGNGERQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQASGVDAMQGVREVALRALADHRTERRCVLPAEYPSLAHFVAATLDRPPATESPVRDSGGQPGKSISRDPPFASLATDSSASSSSFACDVLTVYANHFREAKRGGVDWVVAAEAL--------GGVSAAXXXXXXXXXXXXXXXXXXXXXDHDESGAATAASSVDGASALKANARPYVEMALAMNPADTALCGAVAALWAATGSPDLAQRVLEAALRAHPYCAELWEQRVALEAGFGSGSTERAGATAAAAAGSRVMLRLRCGGKLGGQTPSGLQARTAGRIATAISHPTSRREIKSFSLQAALRAPPGSSAPVAAAGAMATIEVPRSIFLMTSLTSLSLAFNGLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSGTLRLLRAAGNRLQSPLSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSERAPAGLSDALPFLEELTLPALA 1698          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15641.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE0.000e+055.99C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 759..779
NoneNo IPR availablePANTHERPTHR23202WASP INTERACTING PROTEIN-RELATEDcoord: 670..1642
coord: 7..738
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1792..1928
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 1821..1844
e-value: 0.089
score: 21.9
coord: 1870..1893
e-value: 15.0
score: 11.9
coord: 1798..1820
e-value: 160.0
score: 3.3
coord: 1894..1917
e-value: 180.0
score: 3.0
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 491..510
e-value: 2.4E-9
score: 36.7
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1782..1930
e-value: 7.2E-26
score: 92.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2173183..2183202 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15641.1mRNA_C-linearis_contig8.15641.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2173160..2183799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15641.1 ID=prot_C-linearis_contig8.15641.1|Name=mRNA_C-linearis_contig8.15641.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1932bp
MAQPAWHGGRGGSRGRGRSPWSGRGSRVWTPGSAPSALRTAVAPTPAPAR
SSPATPTAATAVAPAPTSYQTTPALTARTSTRKAADLVQVVSEQSAAEIE
VHLKEVEDRLAVVIAQEEEVRAITDEHLEREGHLTKLLTDLYRQQEEKDG
PSLPAASSLASSARPRLEAAEAASASGDDRPGAAAAPAVPASPSPSPPAS
APAAAAATAGPTVRDAVSQSLPRPDPSSSLPQPARKAKVTAGVAAGAAAA
AAAKPPPLNQTGSGSSAPARRRHASSSSPRASSSAVAAAAGGKEPNPSLV
LAMAMGCGVIPGGDDLLTRDADTIAEYIGLMSYEAVAEEAGTAVTAERWR
QTGLSLKGSLDRAEATAACPARMPNLLALAETIHPLNGIVFSGAAATAAE
RASVAAGLPPSGGSNKKSKKRKGGIGISPWVNDSALIFPPLKTAVESRRT
ESPIFSLLKTAAVATATADGQARETEAPGLKRRRMDVSAFLCPFELNGVC
NDDDCRYQHLDIYLRKPSEKPSTPLPPDDAATATPNTNSPSATVSDPRVP
GKEPARSPATGVPAAAGAVPEDTVLQSKQQQLPPIDFSGEREPPRRAAPG
GDRGGGWGGAKPPPKPSEQEAVSPAHGPGGGGGGGGGGGGGGEDTSKEGG
ESGEETTSVYGEEDFLALPTESAECQRGESGGGASGGERASEAAAAERPS
PAVLANAFARAASGDSTKGGHGRGGGSGATGAGGNSSGGLEARYYFEDGS
GRAQGAAVTALTEDQLNALEAQLKNEDARCDVEGWLLLALHRLPRSGDSV
TAVLNAVGGVASGASGPMGSLDQAAIKPALRTFVQPLERAEGEQAEALWL
LYLRLFAFLPGKGDDALGMAEYALEKFPTSRRIWRLYHSMLQKSSVWSLT
KETSCYTRQFEALLLLRSRATAATAMQPQPQSGSGSSGSSSSISAGAGET
EPGAEERGGGGGGDTNVEMVIYLMLERCCLLTESGYKLQAAAEMLDALGP
LTEGQPLWGWDAADEQGRRTMLRTPSGRDNDGGGGSSGVLGGASAAGDDQ
RLPPGVAMVVKEAPRESRCVLWLTALHILMTGVFPRHALLLAEDGGGGGS
GDDGGAETNPREDTRDLAHLLLWPKEWLSSKGSPGLEPPVNAELQEVIFK
TFMSALSDAELLPPKSRGGQGWAPPTKDRDALLSSALEAKTARTRGLAPD
PSALEGTPLVLALNWLTFCRGRADAKQGRMMAVACCRRFQLARPDHPALL
EHFLLEHQISKARTLDGIYDEISRAFDPEGVAAEAVRERREAAEGKRNQN
PTATDSGQSEPSVLPLPSEDRLQAVYTFLRFVEMRLEAAESNPAAPAGRD
TVEVAQRVLHRALVGMWAAAPTSTSNARSPGPREWLQKGADEPVRQALEG
AKASLFRWADGASGSEAELSAGTSSRRPGVRRRRDVPGRNGERQLSTIVF
SLWLLGGASAATGALDHLLSAGSFSSMSAERRRLAWLQRLGAAVVMSARQ
AQAPGEDSLQAVREVALRALADHRTHRRVEYPTLAHFVASTLDRPVVGSS
STRDFGNQSGRYHPASVAAETPVSSFSFDVLTVYANHFRGGVDWVVAAEA
LERGGGGGEDGRSAALALLRWVSWADDDEHVAAAAATGGSLGIQINARPY
VAKALTRHPGDPALSGAVAALHAATRWPGHAQRVLEAALRANPYCAALWE
QRIALEAGFGYGSTERAGVTAAAAASSNALVRLNCGGKLGGETPSPLQAR
TAGRIATMICHPSCRRETKSFSLQAALAGPAQEAAAPATVVPRSVFLMDS
LVSLSLAFNGLVSVPVAIGRLPALRSLDISGNALTALPLSLSRLSGTLRV
LRAAGNKLKSPLSANPLEDLVSLRVLDLEHNELCPFPEAVVRKLTDLRTL
KLAGNRFSGRTPTGLSDVLPHLEELTLPALS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR019607Putative_zinc-finger_domain
IPR032675LRR_dom_sf