prot_C-linearis_contig8.15635.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15635.1
Unique Nameprot_C-linearis_contig8.15635.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length420
Homology
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BLAST of mRNA_C-linearis_contig8.15635.1 vs. uniprot
Match: D8LUC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUC1_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.380e-52
Identity = 130/305 (42.62%), Postives = 161/305 (52.79%), Query Frame = 0 
Query:   79 AAVMTPDEVLTLGVLALAGLWPGCWNGIAAIIVHKVERLTKSGAVDAPFQRCARSLVLLLLRDPGETSLAAETWQHLADAQARLPSELGQVLSLACSLLQRRSLGASDARTKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEGSPVPRLLPPSEVLPLLLQXXXXXXXXLPPFSASTEAAQLQPQXXXXXSAPRGAAPALPDQLIPAQPQQLSGEASAEPPHPVYSIADGLGGTEAEFPVLLPH-SSSSVPVS-PRPAANWETNGNHPGPQGSSDLSSP 381
            AA  TPDEVL LGVLALAGLW GCW+GIA +IVHKVE+L +SG+VD PF+RCA+SLV LLL+ PGE+SL  +TW+ L+  QARLP +LGQVL +ACSLLQR+++ A+D R KR                                                      E S  P L+PPS+V P LLQ          P       AQLQ       SA  G A   P++  P             P H +Y+ A   GGTEA+FPVLLPH ++S+VP S PRP +   +NGNH GP   S   +P
Sbjct:   64 AAAATPDEVLALGVLALAGLWSGCWSGIATVIVHKVEKLIRSGSVDVPFRRCAQSLVDLLLQSPGESSLGEDTWRQLSSTQARLPHKLGQVLGIACSLLQRKAVEAADTRAKRKRRRCLSSSMAALKVPTPLPPPCTTGLVTMVGDIAREEEEQEIENMRKTQAAGAERSVNPPLVPPSQVFPPLLQQ---------PLQPVPLPAQLQ------LSA--GTAAPQPERTPP-------------PSHGLYAGAPAAGGTEADFPVLLPHRATSAVPSSFPRPES-LGSNGNHHGPPSLSPQEAP 337
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUC1_ECTSI1.380e-5242.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2128698..2130346 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15635.1mRNA_C-linearis_contig8.15635.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2127811..2130402 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15635.1 ID=prot_C-linearis_contig8.15635.1|Name=mRNA_C-linearis_contig8.15635.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=420bp
MAQEQAAIGNAVPSFPQHTQREVEPPPATPALQEPHHQLQGQPLEQRHSS
SSVPQPEHAAPSGSHDSNGGGKASSGATAAVMTPDEVLTLGVLALAGLWP
GCWNGIAAIIVHKVERLTKSGAVDAPFQRCARSLVLLLLRDPGETSLAAE
TWQHLADAQARLPSELGQVLSLACSLLQRRSLGASDARTKRKRRRALSCD
AVAARAATVSQLPIPCAPATLAIAIKAVREHEEREVEERKRQREMEGSPV
PRLLPPSEVLPLLLQQRQPPPPPLPPFSASTEAAQLQPQPPAPASAPRGA
APALPDQLIPAQPQQLSGEASAEPPHPVYSIADGLGGTEAEFPVLLPHSS
SSVPVSPRPAANWETNGNHPGPQGSSDLSSPPHAPLEAGYPSHLAAVASG
PVIAPPAREAIRDATSSIP*
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