prot_C-linearis_contig8.15632.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15632.1
Unique Nameprot_C-linearis_contig8.15632.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length203
Homology
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: D7FJG1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 1.320e-92
Identity = 133/199 (66.83%), Postives = 158/199 (79.40%), Query Frame = 0
Query:    5 LFFRCCSQPTKPDPSQDTDVKAKHLACPRCRRLLIVPSVETFQCACSLIF-RVTGGSGG-MQLCFSLSDQEAHSQGCGLPRELVERMPVVAVTEKMCAEWKGKTAPCGGEGEGAKANPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVNEALTGSSGVAFVTAVEGNPMPVIERTR 201
            +F+ CC++  K DP QD  V  KHL+CPRCRRLLIVP+V+TF+C CSL+F +V    GG MQLCFSLS+QE H QGCGLPRELVER+PV  VTE+MCA+ K +     GE +  KA P  D  +MTCRICLSDY+PGD VR+LPCFHRFHV EIDDWL+RN  CPLCHLD+++ALTGSSGVAFV+ +EGNP PVIERTR
Sbjct:    1 MFWSCCTRAPKQDPDQDRVVNTKHLSCPRCRRLLIVPNVDTFRCHCSLVFSKVRDAVGGTMQLCFSLSEQELHGQGCGLPRELVERLPVTVVTEEMCAKKKHQAVDANGE-QAPKAEPIDDD-SMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIERTR 197          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 5.130e-16
Identity = 55/165 (33.33%), Postives = 77/165 (46.67%), Query Frame = 0
Query:   31 CPRCRRLLIVPSVET---FQCACS----------LIFRVTGGSGGMQLCFSLSDQEAHSQGCGLPRELVERMPVVAVTEKMCAEWKGKTAPCGGEGEGAKANPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVNEALTGSSG 182
            C  C R+ ++P   T   F C C           L+  +T G G         +   H QG    +ELV  +P V            K A    E  G       D   ++CR+CLS+Y+ G+ +RVLPCFH+FH G ID+WL+R+  CPLC+  V++AL    G
Sbjct:   48 CTNCGRVGMLPHQSTTAVFLCPCGTPVLAATPGQLLTLITRGGG-----LGALEGVHHHQGAS--KELVALLPTVTHRGDC------KAAATAQEAFGE------DDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKALQQHGG 193          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.110e-13
Identity = 52/171 (30.41%), Postives = 79/171 (46.20%), Query Frame = 0
Query:   23 DVKAKHLACPRCRRLLIVPSVE------TFQCAC-------SLIFRVTGGSGGMQLCFSLSDQEAHSQGCGLPRELVERMPVVAVTEK----MCAEWKGKTAPCGGEGEGAKANPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVNEA 176
            D + + + C  C R   + S E      +F C+C       S +  +T   GG+ +        + SQ  G   +LVER+P +   E     + AE                    G+   ++CR+CLSDY+ GD++R+LPC H+FH   ID+WL R+  CPLC+  V  A
Sbjct:  829 DSQLQVVMCSSCGRAGFIQSSEALASRSSFFCSCGSPVVPASALQLLTAMPGGISM-------SSVSQHTGASPQLVERLPTMQYQESSRKVLVAEH-------------------GEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVA 973          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A8J4U880_CLAMG (Synaptonemal complex protein 3 isoform X1 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4U880_CLAMG)

HSP 1 Score: 76.6 bits (187), Expect = 8.500e-13
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0
Query:  116 AKA-NPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVN 174
            AKA +P  + G   C+IC SDYK G+ +R+LPCFH +HV  ID WL  N TCP+C  DV+
Sbjct:  556 AKAYDPAHNAGKTDCQICFSDYKKGEKLRILPCFHDYHVKCIDRWLKENATCPICRADVS 615          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: UPI001FEE1356 (uncharacterized protein si:ch211-59o9.10 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEE1356)

HSP 1 Score: 76.3 bits (186), Expect = 1.080e-12
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 0
Query:   94 VTEKMCAEWKGKTAPCGGEGEGAKA-NPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVN 174
            + +K  ++W+ +  P       AKA +P  + G   C+IC SDYK G+ +R+LPCFH +H+  ID WL  N TCP+C  DV+
Sbjct:  438 IAKKTLSKWEIERLP-------AKAYDPAHNAGKTDCQICFSDYKKGEKLRMLPCFHDYHMKCIDRWLKENATCPICRADVS 512          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A5N5NVD4_PANHP (RING-type domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5NVD4_PANHP)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-12
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 0
Query:  119 NPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVN 174
            +P  + G   C+IC SDYK G+ +R+LPCFH +HV  ID WL  N TCP+C  DV+
Sbjct:  402 DPSHNAGKTDCQICFSDYKKGEKLRILPCFHDYHVKCIDRWLKENATCPICRADVS 457          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: UPI00199EE1DE (E3 ubiquitin-protein ligase RLIM n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI00199EE1DE)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-12
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:  116 AKA-NPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVN 174
            AKA +P    G   C+IC SDYK G+ +R+LPCFH +HV  ID WL  N TCP+C  DV+
Sbjct:  410 AKAYDPAHSAGKTECQICFSDYKKGEKLRMLPCFHDYHVKCIDRWLKENATCPICRADVS 469          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A8C4CEI4_9TELE (E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CEI4_9TELE)

HSP 1 Score: 75.5 bits (184), Expect = 1.910e-12
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 0
Query:  116 AKANPCGDTGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDVNE 175
            +K +P    G   C+IC  DY  G+ +R+LPCFH +HV  ID WL  NTTCP+C  DV +
Sbjct:  407 SKFDPAHSAGKTECQICFCDYSQGEKLRILPCFHDYHVKCIDRWLQDNTTCPICRADVTD 466          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A3Q3DAV1_HIPCM (Uncharacterized LOC109518225 n=3 Tax=Hippocampus comes TaxID=109280 RepID=A0A3Q3DAV1_HIPCM)

HSP 1 Score: 73.9 bits (180), Expect = 4.620e-12
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 0
Query:  125 GNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDV 173
            GN  C+IC  DY  GD +R+LPCFH +HV  ID WL  NTTCP+C +D+
Sbjct:  301 GNARCQICFGDYDDGDQLRMLPCFHDYHVACIDRWLRDNTTCPICRVDL 349          
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Match: A0A669EBV7_ORENI (RING-type domain-containing protein n=8 Tax=Pseudocrenilabrinae TaxID=318546 RepID=A0A669EBV7_ORENI)

HSP 1 Score: 68.9 bits (167), Expect = 7.670e-12
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:  124 TGNMTCRICLSDYKPGDSVRVLPCFHRFHVGEIDDWLDRNTTCPLCHLDV 173
            +GN  C+IC  DY  G+ +R+LPCFH +HV  ID WL  NTTCP+C  ++
Sbjct:   42 SGNTQCQICFCDYDNGEKLRMLPCFHDYHVQCIDRWLKDNTTCPICRANL 91          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15632.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJG1_ECTSI1.320e-9266.83RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2Y0A3_9STRA5.130e-1633.33Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KTI9_9PHAE5.110e-1330.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8J4U880_CLAMG8.500e-1353.33Synaptonemal complex protein 3 isoform X1 n=1 Tax=... [more]
UPI001FEE13561.080e-1241.46uncharacterized protein si:ch211-59o9.10 n=1 Tax=T... [more]
A0A5N5NVD4_PANHP1.380e-1251.79RING-type domain-containing protein n=2 Tax=Pangas... [more]
UPI00199EE1DE1.910e-1253.33E3 ubiquitin-protein ligase RLIM n=1 Tax=Silurus m... [more]
A0A8C4CEI4_9TELE1.910e-1248.33E3 ubiquitin-protein ligase RLIM-like n=2 Tax=Dent... [more]
A0A3Q3DAV1_HIPCM4.620e-1257.14Uncharacterized LOC109518225 n=3 Tax=Hippocampus c... [more]
A0A669EBV7_ORENI7.670e-1252.00RING-type domain-containing protein n=8 Tax=Pseudo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 129..169
e-value: 3.7E-4
score: 29.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 128..169
e-value: 5.0E-11
score: 42.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 129..170
score: 10.247
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 114..178
e-value: 1.1E-16
score: 61.8
NoneNo IPR availablePANTHERPTHR45977FAMILY NOT NAMEDcoord: 126..175
NoneNo IPR availablePANTHERPTHR45977:SF4TARGET OF ERK KINASE MPK-1coord: 126..175
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 128..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:2109539..2114572 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15632.1mRNA_C-linearis_contig8.15632.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 2109493..2115246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15632.1 ID=prot_C-linearis_contig8.15632.1|Name=mRNA_C-linearis_contig8.15632.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=203bp
MIFPLFFRCCSQPTKPDPSQDTDVKAKHLACPRCRRLLIVPSVETFQCAC
SLIFRVTGGSGGMQLCFSLSDQEAHSQGCGLPRELVERMPVVAVTEKMCA
EWKGKTAPCGGEGEGAKANPCGDTGNMTCRICLSDYKPGDSVRVLPCFHR
FHVGEIDDWLDRNTTCPLCHLDVNEALTGSSGVAFVTAVEGNPMPVIERT
RA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD