prot_C-linearis_contig8.15596.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15596.1
Unique Nameprot_C-linearis_contig8.15596.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length109
Homology
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.800e-18
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 0
Query:   47 RSRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKGEVFPLE 109
            R  +N GRW KEEH+AFL+G+ ++ K+W LIA +VKTRS +Q+RTHGQKYF K+ KGE FP E
Sbjct:    2 RRSFNNGRWTKEEHDAFLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEE 64          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.310e-16
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 0
Query:   45 KSRSRYNTGRWMKEEHEAFLRGVEMYDKD-WHLIATVVKTRSVLQIRTHGQKYFTKLAKGEVFPLE 109
            K R R N GRW  EEH AFLRGV  + ++ W  IAT++ TR+VLQIRTH QKY+ K+ KGE FP E
Sbjct:    5 KFRIRRNKGRWTSEEHHAFLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 70          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: K0S452_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S452_THAOC)

HSP 1 Score: 82.0 bits (201), Expect = 4.350e-16
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 0
Query:   41 GKPAKSRSRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKG 103
            G PA SR   NTGRW  EEH  FL+G+E + K W  IAT++K+R+V+QIRTH QKYF KLAK 
Sbjct:  299 GMPASSRQSENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKA 361          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A7S3PLT1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PLT1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.440e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0
Query:   48 SRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAK 102
            S  NTGRW +EEH  FL G+E Y K+W  IA ++KTRSV+QIRTH QKYF K+AK
Sbjct:   22 SNINTGRWTREEHNMFLHGLETYGKEWKKIADLIKTRSVVQIRTHAQKYFQKVAK 76          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.290e-15
Identity = 29/54 (53.70%), Postives = 45/54 (83.33%), Query Frame = 0
Query:   51 NTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKGE 104
            NTGRW ++EHE F++G+E+Y ++W  +A+++ +R+V+QIRTH QKYF KLAK +
Sbjct:   19 NTGRWTRDEHERFVKGLELYGREWKKVASMIPSRTVVQIRTHAQKYFQKLAKEQ 72          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A7S3LKU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKU2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.380e-15
Identity = 31/59 (52.54%), Postives = 48/59 (81.36%), Query Frame = 0
Query:   44 AKSRSRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAK 102
            A++ +R NTGRW K EH+ F++G+++Y K+W  IA +++TR+++QIRTH QKYF K+AK
Sbjct:   81 AENGNRENTGRWTKAEHDRFVKGLDVYGKEWKKIAAMIETRTIVQIRTHAQKYFQKIAK 139          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A1Z5KDK7_FISSO (Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK7_FISSO)

HSP 1 Score: 79.7 bits (195), Expect = 3.660e-15
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 0
Query:    4 VKIATKYTPAPPDLLLCSCTSTCVQNGMT----SQSFDPRPGKPAKSRSR-YNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKG 103
            +K+ T   P+PP     S +S  V         S + +  PG+ A S +   NTGRW  EEH  FL+G+E + K W  IA+++K+R+V+QIRTH QKYF KLAK 
Sbjct:   45 IKLETSAVPSPPASGATSSSSKNVYKSKKKKGQSAATEGAPGQAAASLAPGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKA 149          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A448YY97_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY97_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.560e-15
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 0
Query:    9 KYTPAPPDLLLCSCT-----STCVQNGMTSQSFDPR-PGKPAKSRSRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKG 103
            + TPAP   +  S +        V   + S   DP  PG+  ++  +  TGRW K+EHEAFL G++MY K+W  +A  VKTR+V+Q RTH QKYF KLAK 
Sbjct:   59 RSTPAPIPSIRTSMSISRGGGNDVVTKLGSTKLDPNTPGRLVET-GQEQTGRWTKDEHEAFLIGIKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLAKA 158          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A1E7FKC4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKC4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 9.650e-15
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   54 RWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKG 103
            RW KEEH+AFL G++MY K+W  +A  VKTR+V+Q RTH QKYF KL+K 
Sbjct:    1 RWTKEEHDAFLSGLKMYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLSKA 50          
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Match: A0A8J9S9N3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9N3_PHATR)

HSP 1 Score: 76.6 bits (187), Expect = 1.800e-14
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   21 SCTSTCVQNGMTSQSFDPRPGKPAKSRSRYNTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKLAKG 103
            S TS   QN           G  ++     NTGRW  EEH  FL+G+E + K W  IA+++K+R+V+QIRTH QKYF KLAK 
Sbjct:   86 SVTSKSKQNSTPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKA 168          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JC35_9PHAE2.800e-1861.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ4_ECTSI3.310e-1659.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0S452_THAOC4.350e-1660.32Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3PLT1_9STRA1.440e-1563.64Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S1C6P3_9STRA3.290e-1553.70Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3LKU2_9STRA3.380e-1552.54Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A1Z5KDK7_FISSO3.660e-1542.86Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=15... [more]
A0A448YY97_9STRA5.560e-1544.55Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FKC4_9STRA9.650e-1562.00Uncharacterized protein (Fragment) n=1 Tax=Fragila... [more]
A0A8J9S9N3_PHATR1.800e-1445.78Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 51..99
e-value: 7.7E-10
score: 48.7
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 52..96
e-value: 1.7E-10
score: 40.9
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 54..99
e-value: 5.2E-8
score: 31.1
NoneNo IPR availableGENE3D1.10.10.60coord: 54..101
e-value: 1.3E-14
score: 55.9
NoneNo IPR availablePANTHERPTHR12802:SF20MPN DOMAIN-CONTAINING PROTEIN CG4751coord: 42..102
NoneNo IPR availablePANTHERPTHR12802SWI/SNF COMPLEX-RELATEDcoord: 42..102
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 47..101
score: 12.248
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 51..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1692468..1707059 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15596.1mRNA_C-linearis_contig8.15596.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1692468..1707059 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15596.1 ID=prot_C-linearis_contig8.15596.1|Name=mRNA_C-linearis_contig8.15596.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
GRAVKIATKYTPAPPDLLLCSCTSTCVQNGMTSQSFDPRPGKPAKSRSRY
NTGRWMKEEHEAFLRGVEMYDKDWHLIATVVKTRSVLQIRTHGQKYFTKL
AKGEVFPLE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR006447Myb_dom_plants
IPR017930Myb_dom
IPR009057Homeobox-like_sf