prot_C-linearis_contig8.15548.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15548.1
Unique Nameprot_C-linearis_contig8.15548.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length907
Homology
BLAST of mRNA_C-linearis_contig8.15548.1 vs. uniprot
Match: A0A6H5KS56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS56_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.830e-21
Identity = 522/916 (56.99%), Postives = 571/916 (62.34%), Query Frame = 0
Query:    5 AIEKIALLTLWWCTNGPGWIHAEGWETAALEEVEEE--------LGEAWFGVGLDPVGEDGVTLVDLRRNGLYGAMPPDIGHLTCLRHLYLGDNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSEAPPIVGGKGLRQWQVCQRKAYLNSWSLVERLTQLEKENVRLRKENKLLKKAKLVSAAKALPLAATSSASGLARAKQPAADGS------ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPKTYDIDAGGSLAPLLIPSSWGVDAPPLATTNLPPASPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRNSSHSHGRILRPLHAGP-SAGDDEERLDTDRAAARRTLLNPSGRRMSSGSDGGYSXXXXXXXXXXXXGSRGIEAXXXXXXXXXXXXXXXXXXXXXXXXXXXGHAPPSQSSEPSSREG------GSAFFSFSPGVSSGSPAGEGESGAGAGM----------TTFSKLPG--------NMLSPLRSPMPRQEGHEGSGAGKPAAAAP-----PLTAADMPTEESFDPAYGRRWATLMGLVPSSYHGAPXXXXXXXXXXXXXXXXXXXXHATN-----GASAINGVPRVTSVVGGAH--ADNGVGAATNGVDLTHSSDXGVXASSRSRALSDSDGRMTATSPLGQMVMGLFRGVGGPMQSVSPSAFAP 869
            A E+ AL  LWWCT+GP W+ A GWE A+               LGE W GVG+DP  + GVTL+DLRRN L GA+PP+IG LT LRHLYLGD  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSE+PP+VGGKGLRQWQV QRKA+LNSWS+V+RL+ LE EN +LRKEN LL+K+  +S   A+PLAA   A G+   K P+  G       A+A+    XXXXXXXXXXXXXXXXXXXXXXXX      AP  +     G+ A      S G  A        PP+S                                              PR+S     R LR   A P + G++E RL+ DR  ARR LLN               XXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXX     +    P   EG      G  FFS SP         EG+SG               T F K  G         MLSPLRSPMPR++G  G       AA       PL  A + TEE+++PAY   WA+ +GL PS    AP                     ATN      +++ NGV R T+  GG+   A    GAA NG                            A SPLGQM+MGLFRGVG P   +SP  F P
Sbjct:   16 AKERKALAALWWCTHGPAWVQALGWEEASAXXXXXXXXXXXXRLLGE-WDGVGVDPELQ-GVTLIDLRRNNLQGALPPEIGDLTHLRHLYLGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSESPPVVGGKGLRQWQVSQRKAFLNSWSMVDRLSHLEAENAQLRKENDLLRKS--ISNGTAIPLAARRQAGGVT--KVPSTRGLIGNSTIASASTKAAXXXXXXXXXXXXXXXXXXXXXXXXSLSETAAPAPHGRLGDGTAAASAPRRSRGGRA---RAGGAPPSSLPPTSTDLPIAHVSTSPPAGDDGGKLAVAVAGPVGVTTPAPTKARPPRSSLRP--RNLRSQQAEPPTVGEEERRLEVDRNTARRALLNS----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADGLSPGGEEGNTDRLHGRGFFSASPR--------EGDSGDXXXXXXXXXXXVVRTVFPKPGGXXXXXSGSEMLSPLRSPMPRRQGSGGPSTAAAEAAVNVESGRPLAPA-VATEEAYNPAYSSVWASWIGLGPS----APEARGG----------------ATNXXXXXASASSNGVTRATNGAGGSREPAQQAEGAARNG--------------------------SRAASPLGQMMMGLFRGVGSPPLQLSPHRFVP 861          
BLAST of mRNA_C-linearis_contig8.15548.1 vs. uniprot
Match: D8LM19_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM19_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 3.890e-16
Identity = 49/94 (52.13%), Postives = 58/94 (61.70%), Query Frame = 0
Query:    7 EKIALLTLWWCTNGPGWIHAEGWETAALEEVEEE-----------LGEAWFGVGLDPVGEDGVTLVDLRRNGLYGAMPPDIGHLTCLRHLYLGD 89
            ++ AL  LWWCTNGP W+ A GWE A+                  LGE W GVG+ P  + GVTL+DLRRN L GA+PP+IG L  LRHLYLGD
Sbjct:    5 DRKALAALWWCTNGPAWVQALGWEEASAXXXXXXXXXXXXXXXCLLGE-WDGVGVGPELQ-GVTLIDLRRNNLQGALPPEIGDLRHLRHLYLGD 96          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS56_9PHAE1.830e-2156.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM19_ECTSI3.890e-1652.13Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 365..385
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 275..335
coord: 52..106
NoneNo IPR availablePANTHERPTHR45974FAMILY NOT NAMEDcoord: 60..229
coord: 106..302
NoneNo IPR availablePANTHERPTHR45974:SF109coord: 60..229
coord: 106..302
coord: 275..335
NoneNo IPR availablePANTHERPTHR45974:SF109coord: 52..106
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.518
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 58..342
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 79..103
e-value: 5.9
score: 15.2
coord: 127..150
e-value: 150.0
score: 3.6
coord: 199..223
e-value: 19.0
score: 11.0
coord: 319..342
e-value: 32.0
score: 9.2
coord: 151..175
e-value: 25.0
score: 10.0
coord: 247..270
e-value: 180.0
score: 2.9
coord: 271..295
e-value: 18.0
score: 11.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 231..358
e-value: 2.3E-30
score: 107.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 26..230
e-value: 5.5E-54
score: 185.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 177..236
e-value: 1.0E-9
score: 38.0
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 82..102
e-value: 0.29
score: 11.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:1233920..1246731 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15548.1mRNA_C-linearis_contig8.15548.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 1233916..1246893 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15548.1 ID=prot_C-linearis_contig8.15548.1|Name=mRNA_C-linearis_contig8.15548.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=907bp
MLPAAIEKIALLTLWWCTNGPGWIHAEGWETAALEEVEEELGEAWFGVGL
DPVGEDGVTLVDLRRNGLYGAMPPDIGHLTCLRHLYLGDNQLSGSIPRSI
GQLSRLCILSLRGNKLKGDIVPELGRLSALQTLSLRDNHFTGVVPPELGQ
LAALRHLFLNNNNLKGPIPDELSQVGTLEQLFLSDNELEGSIPESFGRLV
NLKELVLSGNQLTGPIPVELSELAGLVRLELDGNDLSGDIPPAMGALSNL
KSLYLNTNCLTGPIPPELGMLSAMKRLDLSTNQLTGSIPAELGQLFELEL
LILNDNKLVGGIPCELGRLHHITLLLLHGNQLSEAPPIVGGKGLRQWQVC
QRKAYLNSWSLVERLTQLEKENVRLRKENKLLKKAKLVSAAKALPLAATS
SASGLARAKQPAADGSATATAAAAAAAGGGGGGGRGVASPILAAAAAAPS
AAAAAPKTYDIDAGGSLAPLLIPSSWGVDAPPLATTNLPPASPSPSPSPS
SSSSPDKGAGGLVTAGGGVGSGSAGAVAAGATATAPRPPRNSSHSHGRIL
RPLHAGPSAGDDEERLDTDRAAARRTLLNPSGRRMSSGSDGGYSSGGSGS
GGAAAGGSRGIEAGASRSGGRSATAAAGARRGSDEEGGASGHAPPSQSSE
PSSREGGSAFFSFSPGVSSGSPAGEGESGAGAGMTTFSKLPGNMLSPLRS
PMPRQEGHEGSGAGKPAAAAPPLTAADMPTEESFDPAYGRRWATLMGLVP
SSYHGAPASSDGVSASSDGVPASSNGVHATNGASAINGVPRVTSVVGGAH
ADNGVGAATNGVDLTHSSDNGVGASSRSRALSDSDGRMTATSPLGQMVMG
LFRGVGGPMQSVSPSAFAPVAIGTKTDDADTADNSGSGSASGAGKTATKG
GNPKPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt