prot_C-linearis_contig8.15518.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig8.15518.1
Unique Nameprot_C-linearis_contig8.15518.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length144
Homology
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BLAST of mRNA_C-linearis_contig8.15518.1 vs. uniprot
Match: D8LFQ3_ECTSI (Ubiquitin carboxyl-terminal hydrolase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.730e-11
Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 0 
Query:    9 ASGGKATQGENIASSGXXXXXXXXAKKEFVDISSVRTKIGRFRRAFGVKTGKRISVG-----KSEFFHYKDLRTPGSQKRILGLRQFDTNGSVKTLSYPVDNDGEMVTGVWGSDPGKGLYNEELVRIAR 132
            A+ GK  QG+ + SSG        AK  +VDI++ RT I   R    VK    +        +S++F YKD+R     K I GL+QFDTNG  + LSYP D  G+ ++G  G      L+  +L   AR
Sbjct: 1002 AAAGKKMQGKKMHSSGGSRGPGAAAKT-YVDINAYRTLIVSSRHRSYVKEDGTVRTSARRRSESKWFAYKDVRGINGGKDIFGLKQFDTNGKERNLSYPSDASGKDLSGFMGLGESNRLFEGDLQTYAR 1129
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig8.15518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ3_ECTSI1.730e-1136.43Ubiquitin carboxyl-terminal hydrolase family prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig8contigC-linearis_contig8:977953..978877 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig8.15518.1mRNA_C-linearis_contig8.15518.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig8 977830..978970 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig8.15518.1 ID=prot_C-linearis_contig8.15518.1|Name=mRNA_C-linearis_contig8.15518.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
MLQRREDSASGGKATQGENIASSGGARGGGAAAKKEFVDISSVRTKIGRF
RRAFGVKTGKRISVGKSEFFHYKDLRTPGSQKRILGLRQFDTNGSVKTLS
YPVDNDGEMVTGVWGSDPGKGLYNEELVRIARNYVKETATAPS*
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