prot_C-linearis_contig79.15437.1 (polypeptide) Chordaria linearis ClinC8C monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-linearis_contig79.15437.1
Unique Nameprot_C-linearis_contig79.15437.1
Typepolypeptide
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Sequence length288
Homology
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BLAST of mRNA_C-linearis_contig79.15437.1 vs. uniprot
Match: A0A6H5L0F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0F7_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.230e-73
Identity = 128/250 (51.20%), Postives = 165/250 (66.00%), Query Frame = 0 
Query:    1 MSSRQQQQQDPCEQ-LACTPRLTFWICAGTSWVVWVFAVAAGADNKWLRNEDGEEFLAAGGDGLLDFCDELDDDS--------VYKDF---CAMFRAFTAMQVIATIACSFSVLLLSVAFFRPSVGGCFSARRLAFIGGALMTTYAVFQLIAVVLGGTMKQEIDSAADE-------------ATFGDSEEGELGPAFGVAVTAVILATLFAVLLLLFARHTGNGPLYECCHSLMLANKANDSPATGDGVG 225
            M   QQQQ + C     CTPRLTFW+ A +SW+VW+FAV+A AD+KW+++    ++LAAG D +L+ CD LDD +         YKDF   C ++RAFTAMQ++ATI CS SVLLL++AFFRP  G C S R LAF+GGALM TYA+FQL+AVVL   + QE D+  ++               F    E E+GP FGV VTA+ILA +  V+L L A  TG+GPLY+CCHSLMLANK+N  P++G   G
Sbjct:    1 MPPPQQQQGNECAPGFQCTPRLTFWVIAASSWLVWIFAVSAAADDKWIKDNGQGDWLAAGEDPVLNLCDGLDDAADDDLLATDEYKDFVSICDLYRAFTAMQMLATIVCSVSVLLLALAFFRPEAGKCASTRTLAFVGGALMATYALFQLVAVVLAAVLAQEFDNLPNDDDTSYLSGYDGFYTFFEAGYEAEVGPTFGVGVTALILAVIMTVVLCLCATRTGDGPLYKCCHSLMLANKSNGIPSSGGEGG 250
[Close]
BLAST of mRNA_C-linearis_contig79.15437.1 vs. uniprot
Match: A0A6H5KJK8_9PHAE (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJK8_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.770e-42
Identity = 91/210 (43.33%), Postives = 131/210 (62.38%), Query Frame = 0 
Query:   11 PCEQLACTPRLTFWICAGTSWVVWVFAVAAGADNKWLRNEDGEEFLAAGGDGLLDFCDELDDDSVYKDFCAMFRAFTAMQVIATIACSFSVLLLSVAFFRPSVG-GCFSARRLAFIGGALMTTYAVFQLIAVVLGGTMKQEIDSAADEATFGDSEEGELGPAFGVAVTAVILATLFAVLLLLFARHTGNGPLYECCHSLMLANKANDSPA 219
            PC    CTPRLTFWI     WV+WVFAVAA AD+KW +  DG + + AG + +LD CD  D      D C++++AFTAMQ IA +  S S++L ++A FRP+ G  C S + LA   G+LM  +A F+++A VL   +++E+D   +   FG  E  +LG  FG+AV AV+L  + AV +L FAR +G+GP ++C +  M  N A ++ A
Sbjct:   70 PC----CTPRLTFWISCALGWVIWVFAVAASADDKWAKI-DGFD-IGAGDEDILDDCDSSD------DVCSLYKAFTAMQFIAAVVVSVSMVLFTLALFRPAAGLKCCSVKSLAIAAGSLMMAFAFFEMLAFVLIIVIEKELDGEFNTG-FGFGE-ADLGATFGLAVVAVVLGVVQAVSVLTFARSSGDGPFFKCLNECMAMNNAPNAAA 265
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig79.15437.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0F7_9PHAE1.230e-7351.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJK8_9PHAE1.770e-4243.33WW domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.140.150coord: 21..206
e-value: 2.6E-5
score: 25.6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..90
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 194..287
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 171..193
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 144..170
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..110
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..143
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 111..121
NoneNo IPR availableTMHMMTMhelixcoord: 171..193
NoneNo IPR availableTMHMMTMhelixcoord: 21..40
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 87..109

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig79contigC-linearis_contig79:706846..710116 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig79.15437.1mRNA_C-linearis_contig79.15437.1Chordaria linearis ClinC8C monoicousmRNAC-linearis_contig79 704646..711161 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-linearis_contig79.15437.1 ID=prot_C-linearis_contig79.15437.1|Name=mRNA_C-linearis_contig79.15437.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=288bp
MSSRQQQQQDPCEQLACTPRLTFWICAGTSWVVWVFAVAAGADNKWLRNE
DGEEFLAAGGDGLLDFCDELDDDSVYKDFCAMFRAFTAMQVIATIACSFS
VLLLSVAFFRPSVGGCFSARRLAFIGGALMTTYAVFQLIAVVLGGTMKQE
IDSAADEATFGDSEEGELGPAFGVAVTAVILATLFAVLLLLFARHTGNGP
LYECCHSLMLANKANDSPATGDGVGREKPMPTATATTPAAPHHYEDAGAV
PLPTATGTAAGEQQQQQQQQQNMAPPPYNELPPAAEI*
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